Ss1.1-Liv1-LVR01E040085.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCACTAATGCAGGGTCAGTATCAGACTTTTCTGTAAAGGCCATATTTTGTTTGGATACA TAACCACTGGACGTATAATCACAGAGGCTGAAGTTCTTCCAGGGCATGGCCTCCTCGTTC AAGAATCTTGTATCCTCGGCCTTTGACAAATATTTGGGCATTGGATGGCGTTTTTAGGGG CCTGGTCTGGCAACCTAAGTAATGGTAACAGGATCCCAGGCAAGGAGGAGTACATCAGGA TTTCTCCTCGAGAAGAAAAGAGGGGGTGGGCACAGGTAGAGCTGAAACCCGAGCAGATGG CAACCTACTTGTTTTTTTCTTCTTAACTTACTTCTGGACGAGTTCACCTATTTGCAAGAA TAATCTCGATCACTCCCTCAGGAGGCCGATTCCAGAGGAGCCAGGATAAAAGGCTGGGGG GCGTGTTCCCTGCCGGAGGCCCGCGTTGGACCGCGGGGAGGCTGGGGAAACCTACCGCGT GAGAGCTGCAGGTATAAAGAGCTCCGCTGCCGCCGCTGGGCAGCTGCAGGCTTCGAAAGG GAAACCTCGTCGGTTCCAATCCAAATCCGTTTTCGAGTACCATCCGGACACCTCGAATAT GGCTCCGGTTGGGGACAAAAAGGCCAAGAAGGGCATCCTGGAACGGTTAAACTCTGGAGA GGTTGTGATTGGAGACGGAGGGTTTGTCTTTGCTCTGGAGAAGAGGGGCTATGTGAAAGC CGGGCCCTGGACCCCAGAAGCTGCCGTGGAACACCCAGAAGCAGTTCGCCAGCTTCATCG GGAGTTCCTCAGAGCCGGATCGAATGTCATGCAGACCTTCACCTTCTATGCCAGTGAGGA CAAGCTGGAGAACAGGGGAAACTACGTTGCAGAGAAAATATCCGGGCAGAAAGTCAATGA AGCTGCTTGTGACATTGCCCGGCAAGTGGCTGATGAGGGAGATGCTTTGGTGGCAGGAGG TGTGAGCCAGACACCTTCGTACCTCAGCTGCAAGAGCGAAACGGAAGTCAAAAAAGTGTT TCGGCAGCAGTTAGAGGTCTTTATGAAGAAGAACGTTGACTTCTTGATTGCAGAGTATTT TGAACATGTTGAAGAGGCTGTGTGGGCAGTTGAAGCCTTGAAAGCATCTGGGAAGCCTGT GGCAGCGACCATGTGCATCGGCCCAGAGGGAGACCTGCACGGCGTGACCCCAGGCCAGTG TGCAGTGCGTCTGGTAAAGGCAGGAGCATCCATTGTTGGCGTGAATTGCCATTTTGACCC CACAATTAGTTTGCAAACAGTGAAGCTCATGAAAGAAGGCTTGCAGGCCGCTGGATTGAA AGCCCACCTGATGAGTCAGCCCTTGGCCTACCACACTCCGGACTGCGGCAAGCAGGGGTT CATCGACCTGCCAGAATTCCCCTTTGGACTGGAGCCCAGAGTTGCAACCAGATGGGACAT TCAAAAATACGCCAGAGAGGCCTACAACCTGGGGGTCAGGTACATAGGCGGGTGCTGTGG ATTTGAGCCCTACCACATCAGGGCCATTGCAGAGGAGCTGGCCCCAGAAAGGGGATTTTT GCCTCCAGCTTCAGAGAAACATGGCAGCTGGGGAAGTGCTTTGGACATGCACACCAAGCC CTGGGTTAGAGCCAGGGCCAGGAAGGAATACTGGGAGAATCTTCGGATAGCCTCCGGCAG GCCGTACAACCCTTCCATGTCAAAGCCGGATGCCTGGGGAGTGACCAAAGGCACAGCTGA GCTGATGCAGCAGAAAGAAGCTACTACGGAGCAGCAGCTGAGAGAGCTCTTTGAAAAACA GAAATTCCCATCTGCCCAGTAGCCTCAGCCAAGCCCGTTTTTAGTGACTTCCCCTATGTT CAGACCACAGTTCCAAAAAATAAAGGAAAGATGGTTTAAAGGCAATGCTTATGGGAATGC CAGCCTATGCATAAGATTCATACAAGCGGCACACAACAGTCACAAATTACACCTGACAGT GTTTTAAAGTATAAATGTCGAATGTGGAGGCAAAATAAGTGAGAAGCAAATCTTAAACAG GTTTACTAAGCACCCAGCATGTACACGGCATTAAGGAAGTCACTGTGGCCAAGGAAAAAT AATTTAGACATTAGTCCCTCTTCTAGACGTTTGCAGACTTCAAAGGGCGATGAGAAGTGA GGTGTCTTGAATGGTTCAGCAACCACACAGCCACAGACAAAGGGCTATATAGGAAAGTGA CTTCCAAGATCGTTTGACCATGACCCCTTCATAAGAAACTCAATTTATATAATGACCCAG TAAAACACACATTGAAGTAAAATGTGATCCATGCAGGTATTTTCTATTTCCATTCCATTC CTATTTCACTAATAAAATTATGCTGGTAGAGGCCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCACTAATGCAGGGTCAGTATCAGACTTTTCTGTAAAGGCCATATTTTGTTTGGATACA TAACCACTGGACGTATAATCACAGAGGCTGAAGTTCTTCCAGGGCATGGCCTCCTCGTTC AAGAATCTTGTATCCTCGGCCTTTGACAAATATTTGGGCATTGGATGGCGTTTTTAGGGG CCTGGTCTGGCAACCTAAGTAATGGTAACAGGATCCCAGGCAAGGAGGAGTACATCAGGA TTTCTCCTCGAGAAGAAAAGAGGGGGTGGGCACAGGTAGAGCTGAAACCCGAGCAGATGG CAACCTACTTGTTTTTTTCTTCTTAACTTACTTCTGGACGAGTTCACCTATTTGCAAGAA TAATCTCGATCACTCCCTCAGGAGGCCGATTCCAGAGGAGCCAGGATAAAAGGCTGGGGG GCGTGTTCCCTGCCGGAGGCCCGCGTTGGACCGCGGGGAGGCTGGGGAAACCTACCGCGT GAGAGCTGCAGGTATAAAGAGCTCCGCTGCCGCCGCTGGGCAGCTGCAGGCTTCGAAAGG GAAACCTCGTCGGTTCCAATCCAAATCCGTTTTCGAGTACCATCCGGACACCTCGAATAT GGCTCCGGTTGGGGACAAAAAGGCCAAGAAGGGCATCCTGGAACGGTTAAACTCTGGAGA GGTTGTGATTGGAGACGGAGGGTTTGTCTTTGCTCTGGAGAAGAGGGGCTATGTGAAAGC CGGGCCCTGGACCCCAGAAGCTGCCGTGGAACACCCAGAAGCAGTTCGCCAGCTTCATCG GGAGTTCCTCAGAGCCGGATCGAATGTCATGCAGACCTTCACCTTCTATGCCAGTGAGGA CAAGCTGGAGAACAGGGGAAACTACGTTGCAGAGAAAATATCCGGGCAGAAAGTCAATGA AGCTGCTTGTGACATTGCCCGGCAAGTGGCTGATGAGGGAGATGCTTTGGTGGCAGGAGG TGTGAGCCAGACACCTTCGTACCTCAGCTGCAAGAGCGAAACGGAAGTCAAAAAAGTGTT TCGGCAGCAGTTAGAGGTCTTTATGAAGAAGAACGTTGACTTCTTGATTGCAGAGTATTT TGAACATGTTGAAGAGGCTGTGTGGGCAGTTGAAGCCTTGAAAGCATCTGGGAAGCCTGT GGCAGCGACCATGTGCATCGGCCCAGAGGGAGACCTGCACGGCGTGACCCCAGGCCAGTG TGCAGTGCGTCTGGTAAAGGCAGGAGCATCCATTGTTGGCGTGAATTGCCATTTTGACCC CACAATTAGTTTGCAAACAGTGAAGCTCATGAAAGAAGGCTTGCAGGCCGCTGGATTGAA AGCCCACCTGATGAGTCAGCCCTTGGCCTACCACACTCCGGACTGCGGCAAGCAGGGGTT CATCGACCTGCCAGAATTCCCCTTTGGACTGGAGCCCAGAGTTGCAACCAGATGGGACAT TCAAAAATACGCCAGAGAGGCCTACAACCTGGGGGTCAGGTACATAGGCGGGTGCTGTGG ATTTGAGCCCTACCACATCAGGGCCATTGCAGAGGAGCTGGCCCCAGAAAGGGGATTTTT GCCTCCAGCTTCAGAGAAACATGGCAGCTGGGGAAGTGCTTTGGACATGCACACCAAGCC CTGGGTTAGAGCCAGGGCCAGGAAGGAATACTGGGAGAATCTTCGGATAGCCTCCGGCAG GCCGTACAACCCTTCCATGTCAAAGCCGGATGCCTGGGGAGTGACCAAAGGCACAGCTGA GCTGATGCAGCAGAAAGAAGCTACTACGGAGCAGCAGCTGAGAGAGCTCTTTGAAAAACA GAAATTCCCATCTGCCCAGTAGCCTCAGCCAAGCCCGTTTTTAGTGACTTCCCCTATGTT CAGACCACAGTTCCAAAAAATAAAGGAAAGATGGTTTAAAGGCAATGCTTATGGGAATGC CAGCCTATGCATAAGATTCATACAAGCGGCACACAACAGTCACAAATTACACCTGACAGT GTTTTAAAGTATAAATGTCGAATGTGGAGGCAAAATAAGTGAGAAGCAAATCTTAAACAG GTTTACTAAGCACCCAGCATGTACACGGCATTAAGGAAGTCACTGTGGCCAAGGAAAAAT AATTTAGACATTAGTCCCTCTTCTAGACGTTTGCAGACTTCAAAGGGCGATGAGAAGTGA GGTGTCTTGAATGGTTCAGCAACCACACAGCCACAGACAAAGGGCTATATAGGAAAGTGA CTTCCAAGATCGTTTGACCATGACCCCTTCATAAGAAACTCAATTTATATAATGACCCAG TAAAACACACATTGAAGTAAAATGTGATCCATGCAGGTATTTTCTATTTCCATTCCATTC CTATTTCACTAATAAAATTATGCTGGTAGAGGCCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 630-1567, - strand, RNAz p=0.975958 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 630-1567, - strand, RNAz p=0.975958 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 630-768, gnl|bosTau2|chr10 (4177976-4178114) | |
| 630-768, gnl|Hg17|chr5 (78409057-78409195) | |
| 630-768, gnl|Mm7|chr13 (90734468-90734330) | |
| 1106-1224, gnl|bosTau2|chr10 (4182984-4183102) | |
| 1106-1224, gnl|Hg17|chr5 (78414418-78414536) | |
| 1106-1224, gnl|Mm7|chr13 (90726730-90726594) | |
| 1409-1636, gnl|bosTau2|chr10 (4184849-4185076) | |
| 1409-1636, gnl|canFam2|chr3 (30661922-30661640) | |
| 1409-1636, gnl|danRer3|chrNA (157657674-157657422) | |
| 1409-1636, gnl|dasNov1|scaffold_4496 (80607-80325) | |
| 1409-1636, gnl|echTel1|scaffold_317496 (7313-7058) | |
| 1409-1636, gnl|fr1|chrUn (60681705-60681944) | |
| 1409-1636, gnl|galGal2|chr13_random (998705-998985) | |
| 1409-1636, gnl|hg17|chr5 (78415174-78415457) | |
| 1409-1636, gnl|Hg17|chr5 (78415209-78415436) | |
| 1409-1636, gnl|loxAfr1|scaffold_1402 (40525-40243) | |
| 1409-1636, gnl|mm7|chr13 (90725485-90725204) | |
| 1409-1636, gnl|Mm7|chr13 (90725449-90725222) | |
| 1409-1636, gnl|monDom2|scaffold_27 (36974350-36974082) | |
| 1409-1636, gnl|panTro1|chr4 (36803157-36802874) | |
| 1409-1636, gnl|rheMac2|chr6 (75311653-75311936) | |
| 1409-1636, gnl|rn3|chr2 (23883053-23882772) | |
| 1409-1636, gnl|tetNig1|chr12 (9565260-9565023) | |
| 1409-1636, gnl|xenTro1|scaffold_183 (1524151-1523910) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 630-768, gnl|bosTau2|chr10 (4177976-4178114) | |
| 630-768, gnl|Hg17|chr5 (78409057-78409195) | |
| 630-768, gnl|Mm7|chr13 (90734468-90734330) | |
| 1106-1224, gnl|bosTau2|chr10 (4182984-4183102) | |
| 1106-1224, gnl|Hg17|chr5 (78414418-78414536) | |
| 1106-1224, gnl|Mm7|chr13 (90726730-90726594) | |
| 1409-1636, gnl|bosTau2|chr10 (4184849-4185076) | |
| 1409-1636, gnl|canFam2|chr3 (30661922-30661640) | |
| 1409-1636, gnl|danRer3|chrNA (157657674-157657422) | |
| 1409-1636, gnl|dasNov1|scaffold_4496 (80607-80325) | |
| 1409-1636, gnl|echTel1|scaffold_317496 (7313-7058) | |
| 1409-1636, gnl|fr1|chrUn (60681705-60681944) | |
| 1409-1636, gnl|galGal2|chr13_random (998705-998985) | |
| 1409-1636, gnl|hg17|chr5 (78415174-78415457) | |
| 1409-1636, gnl|Hg17|chr5 (78415209-78415436) | |
| 1409-1636, gnl|loxAfr1|scaffold_1402 (40525-40243) | |
| 1409-1636, gnl|mm7|chr13 (90725485-90725204) | |
| 1409-1636, gnl|Mm7|chr13 (90725449-90725222) | |
| 1409-1636, gnl|monDom2|scaffold_27 (36974350-36974082) | |
| 1409-1636, gnl|panTro1|chr4 (36803157-36802874) | |
| 1409-1636, gnl|rheMac2|chr6 (75311653-75311936) | |
| 1409-1636, gnl|rn3|chr2 (23883053-23882772) | |
| 1409-1636, gnl|tetNig1|chr12 (9565260-9565023) | |
| 1409-1636, gnl|xenTro1|scaffold_183 (1524151-1523910) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| lun (0.902935) | |
| cli (0.764059) | |
| cki (0.660939) | |
| eli (0.151814) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.902935) | |
| cli (0.764059) | |
| cki (0.660939) | |
| eli (0.151814) |