Ss1.1-Liv1-LVR01E070083.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAGGAGGGCCTCTCCCGGACGGTGCCAAGCTGACCCCTGCGAAGGCAGAGCAGGACTT TTGCCCCCTGCCTGCTCCTCCAGCTTCCAGTTCAGATCCTACAGTGTCTCCCAGCAACAT CTGCCCAGGATGCGGGAAGCCGGGGCCCCCAGGGGCCAGGGCCAGTCCCCCAGAGGGACG CGTGCTCTGAGCCAGCCCCAGATCATCCTGCTCACCTACGTCCTCTCGGCCCTGGAGCTC ACCTGCCTCTTCATGCATTTCTCCGTCCTGCCTTACCTGTCCCGGAGGCTGGGTCTGGAT TCTGTCGCCTTTGGCTACCAGCAGACTCTGTTTGGCGTGCTTCAGCTGCTGGGCGGGCCC GTGTTTGGCAGGTTCGCAGACCAGCGCGGGGCGCGGGCAGCCTTCACACTCTCCTTCCTG GCATCCTCTGGGCTCTACCTGCTCCTGGCGGCTGCCTGCAGCCCGGCCCTGCCCGGCGTG ACCTTACTCTTTGCCTCGCGCCTGCCAGGGGCACTCATGCACACGCTGCCAGCTGCCCAA ATGGTCCTCGCGGACCTGTCTGCGCCTGAGGAGCGGCCCACGGCCCTCAGCCGGCTCGGC CTGTGCTTCGGGGTCGGTGTCATCTTCGGCTCTCTTCTCGGCGGGACCCTAAGCAGCTCG TGCGGGATTCAGTGTCCGGTCATTGTGGCTCTTGTGGTCAGCCTCCTGGGAGCCGTCCTC AGCTTCACCTGCATCCCCACCAACACCAAAGGCGCCAGCGACCACGCCCAGCCTGTCCCA CCAGGCAGGACCAAGGCCAGCGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAGGAGGGCCTCTCCCGGACGGTGCCAAGCTGACCCCTGCGAAGGCAGAGCAGGACTT TTGCCCCCTGCCTGCTCCTCCAGCTTCCAGTTCAGATCCTACAGTGTCTCCCAGCAACAT CTGCCCAGGATGCGGGAAGCCGGGGCCCCCAGGGGCCAGGGCCAGTCCCCCAGAGGGACG CGTGCTCTGAGCCAGCCCCAGATCATCCTGCTCACCTACGTCCTCTCGGCCCTGGAGCTC ACCTGCCTCTTCATGCATTTCTCCGTCCTGCCTTACCTGTCCCGGAGGCTGGGTCTGGAT TCTGTCGCCTTTGGCTACCAGCAGACTCTGTTTGGCGTGCTTCAGCTGCTGGGCGGGCCC GTGTTTGGCAGGTTCGCAGACCAGCGCGGGGCGCGGGCAGCCTTCACACTCTCCTTCCTG GCATCCTCTGGGCTCTACCTGCTCCTGGCGGCTGCCTGCAGCCCGGCCCTGCCCGGCGTG ACCTTACTCTTTGCCTCGCGCCTGCCAGGGGCACTCATGCACACGCTGCCAGCTGCCCAA ATGGTCCTCGCGGACCTGTCTGCGCCTGAGGAGCGGCCCACGGCCCTCAGCCGGCTCGGC CTGTGCTTCGGGGTCGGTGTCATCTTCGGCTCTCTTCTCGGCGGGACCCTAAGCAGCTCG TGCGGGATTCAGTGTCCGGTCATTGTGGCTCTTGTGGTCAGCCTCCTGGGAGCCGTCCTC AGCTTCACCTGCATCCCCACCAACACCAAAGGCGCCAGCGACCACGCCCAGCCTGTCCCA CCAGGCAGGACCAAGGCCAGCGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 51-168, - strand, RNAz p=0.700402 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 51-168, - strand, RNAz p=0.700402 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 51-272, gnl|bosTau2|chr29 (43736538-43736760) | |
| 51-272, gnl|canFam2|chr18 (49901437-49901979) | |
| 51-272, gnl|dasNov1|scaffold_230079 (256-826) | |
| 51-272, gnl|echTel1|scaffold_107935 (988-534) | |
| 51-272, gnl|hg17|chr11 (2880861-2881366) | |
| 51-272, gnl|Hg17|chr11 (2881076-2881294) | |
| 51-272, gnl|mm7|chr7 (139903227-139903637) | |
| 51-272, gnl|Mm7|chr7 (139903392-139903584) | |
| 51-272, gnl|panTro1|chr9 (3066228-3066733) | |
| 51-272, gnl|rheMac2|chr14 (2911597-2912096) | |
| 51-272, gnl|rn3|chr1 (204006308-204006765) | |
| 369-532, gnl|bosTau2|chr29 (43739551-43739714) | |
| 369-532, gnl|fr1|chrUn (266113329-266113209) | |
| 369-532, gnl|hg17|chr11 (2887000-2887102) | |
| 369-532, gnl|Hg17|chr11 (2887000-2887162) | |
| 369-532, gnl|mm7|chr7 (139906998-139907100) | |
| 369-532, gnl|Mm7|chr7 (139906997-139907160) | |
| 369-532, gnl|panTro1|chr9 (3072378-3072480) | |
| 369-532, gnl|rheMac2|chr14 (2917997-2918099) | |
| 369-532, gnl|rn3|chr1 (204010862-204010964) | |
| 369-532, gnl|tetNig1|chrUn_random (7080151-7080251) | |
| 665-771, gnl|bosTau2|chr29 (43746996-43747102) | |
| 665-771, gnl|canFam2|chr18 (49913413-49913503) | |
| 665-771, gnl|echTel1|scaffold_170575 (3030-2938) | |
| 665-771, gnl|hg17|chr11 (2894407-2894497) | |
| 665-771, gnl|Hg17|chr11 (2894427-2894533) | |
| 665-771, gnl|mm7|chr7 (139918072-139918161) | |
| 665-771, gnl|Mm7|chr7 (139918091-139918190) | |
| 665-771, gnl|rheMac2|chr14 (2926389-2926479) | |
| 665-771, gnl|rn3|chr1 (204021291-204021380) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-272, gnl|bosTau2|chr29 (43736538-43736760) | |
| 51-272, gnl|canFam2|chr18 (49901437-49901979) | |
| 51-272, gnl|dasNov1|scaffold_230079 (256-826) | |
| 51-272, gnl|echTel1|scaffold_107935 (988-534) | |
| 51-272, gnl|hg17|chr11 (2880861-2881366) | |
| 51-272, gnl|Hg17|chr11 (2881076-2881294) | |
| 51-272, gnl|mm7|chr7 (139903227-139903637) | |
| 51-272, gnl|Mm7|chr7 (139903392-139903584) | |
| 51-272, gnl|panTro1|chr9 (3066228-3066733) | |
| 51-272, gnl|rheMac2|chr14 (2911597-2912096) | |
| 51-272, gnl|rn3|chr1 (204006308-204006765) | |
| 369-532, gnl|bosTau2|chr29 (43739551-43739714) | |
| 369-532, gnl|fr1|chrUn (266113329-266113209) | |
| 369-532, gnl|hg17|chr11 (2887000-2887102) | |
| 369-532, gnl|Hg17|chr11 (2887000-2887162) | |
| 369-532, gnl|mm7|chr7 (139906998-139907100) | |
| 369-532, gnl|Mm7|chr7 (139906997-139907160) | |
| 369-532, gnl|panTro1|chr9 (3072378-3072480) | |
| 369-532, gnl|rheMac2|chr14 (2917997-2918099) | |
| 369-532, gnl|rn3|chr1 (204010862-204010964) | |
| 369-532, gnl|tetNig1|chrUn_random (7080151-7080251) | |
| 665-771, gnl|bosTau2|chr29 (43746996-43747102) | |
| 665-771, gnl|canFam2|chr18 (49913413-49913503) | |
| 665-771, gnl|echTel1|scaffold_170575 (3030-2938) | |
| 665-771, gnl|hg17|chr11 (2894407-2894497) | |
| 665-771, gnl|Hg17|chr11 (2894427-2894533) | |
| 665-771, gnl|mm7|chr7 (139918072-139918161) | |
| 665-771, gnl|Mm7|chr7 (139918091-139918190) | |
| 665-771, gnl|rheMac2|chr14 (2926389-2926479) | |
| 665-771, gnl|rn3|chr1 (204021291-204021380) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) |