Non-Coding RNA Search

Ss1.1-Liv1-LVR01E120094.5

Sequence:


               
               CGCCGCCGCCATTGGAGTGGGGGCCCCCCCCTTTCCCCCTTCGCCTCCTGACAGGAAAGG
TTTAAGGGGGACAGAGCCCTGGGAGGCCGGGCCGGGCTCGGGGGCCGCCCCGGGGGCCCG
GGCCATGGATGTGCGCCGTCTGAAGGTGAACGAACTTCGCGAGGAACTGCAGCGCCGCGG
CCTGGACACTCGTGGCCTCAAGGCCGAGCTTGCTGAGCGGCTGCAGGCGGCGCTGGAGGC
CGAGGAGCCCGACGACGAGCGGGAGCTCGAGGCCGACGACGAACCGGGGCGACCTGGGCA
CAACAGCGAGGAGGTCGAGACCGAGGGGGGCTCCGAGCTGGAGGGGACCGCGCAGCCACC
GCCGCCCGGGCTGCAGCTGCAGCCGCACCCGGAGCCCGGCGGCTACTCGGGGCCGGACGG
ACATTATGTCATGGACAATATTACCAGGCAGAACCAATTCTATGAGACACCGGTCATCAA
ACAAGAAAACGAGTCAGGCTACGAGAGGAGACCATTGGAAATGGAGCAACAGCAGCAGGC
CTATCGCCCAGAAGTGAAGACAGAGATGAAGCAAGAAGCACCCACCAGTTTCCTCCCACC
TGAAGCATCTCAACTCAAACCAGACAGACAGCAGTTCCAGAGTCGCAAGAGGCCTTATGA
AGAAAACCGGGGAAGGGGGTACTTCGAGCACCGAGAGGAGAGGAGGGGCCGATCTCCTCA
GCCTCCCGCTGAAGAGGATGAAGATGACTTTGACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGCCGCCATTGGAGTGGGGGCCCCCCCCTTTCCCCCTTCGCCTCCTGACAGGAAAGG
TTTAAGGGGGACAGAGCCCTGGGAGGCCGGGCCGGGCTCGGGGGCCGCCCCGGGGGCCCG
GGCCATGGATGTGCGCCGTCTGAAGGTGAACGAACTTCGCGAGGAACTGCAGCGCCGCGG
CCTGGACACTCGTGGCCTCAAGGCCGAGCTTGCTGAGCGGCTGCAGGCGGCGCTGGAGGC
CGAGGAGCCCGACGACGAGCGGGAGCTCGAGGCCGACGACGAACCGGGGCGACCTGGGCA
CAACAGCGAGGAGGTCGAGACCGAGGGGGGCTCCGAGCTGGAGGGGACCGCGCAGCCACC
GCCGCCCGGGCTGCAGCTGCAGCCGCACCCGGAGCCCGGCGGCTACTCGGGGCCGGACGG
ACATTATGTCATGGACAATATTACCAGGCAGAACCAATTCTATGAGACACCGGTCATCAA
ACAAGAAAACGAGTCAGGCTACGAGAGGAGACCATTGGAAATGGAGCAACAGCAGCAGGC
CTATCGCCCAGAAGTGAAGACAGAGATGAAGCAAGAAGCACCCACCAGTTTCCTCCCACC
TGAAGCATCTCAACTCAAACCAGACAGACAGCAGTTCCAGAGTCGCAAGAGGCCTTATGA
AGAAAACCGGGGAAGGGGGTACTTCGAGCACCGAGAGGAGAGGAGGGGCCGATCTCCTCA
GCCTCCCGCTGAAGAGGATGAAGATGACTTTGACGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55649231|ref|XP_512685.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55649231|ref|XP_512685.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               24-428, gnl|bosTau2|chr18 (45755832-45756230)
               

               
               24-428, gnl|Hg17|chr19 (46462148-46462546)
               

               
               24-428, gnl|Mm7|chr7 (22528766-22528370)
               


               
               187-303, gnl|bosTau2|chr17 (9202094-9202210)
               

               
               187-303, gnl|Hg17|chr19 (46462311-46462420)
               

               
               187-303, gnl|Mm7|chr7 (22528604-22528489)
               


               
               550-706, gnl|bosTau2|chr18 (45761923-45762079)
               

               
               550-706, gnl|Hg17|chr19 (46469825-46469981)
               

               
               550-706, gnl|Mm7|chr7 (22522510-22522354)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-428, gnl|bosTau2|chr18 (45755832-45756230)
               

               
               24-428, gnl|Hg17|chr19 (46462148-46462546)
               

               
               24-428, gnl|Mm7|chr7 (22528766-22528370)
               


               
               187-303, gnl|bosTau2|chr17 (9202094-9202210)
               

               
               187-303, gnl|Hg17|chr19 (46462311-46462420)
               

               
               187-303, gnl|Mm7|chr7 (22528604-22528489)
               


               
               550-706, gnl|bosTau2|chr18 (45761923-45762079)
               

               
               550-706, gnl|Hg17|chr19 (46469825-46469981)
               

               
               550-706, gnl|Mm7|chr7 (22522510-22522354)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	24-428, gnl\|bosTau2\|chr18 (45755832-45756230)
	24-428, gnl\|Hg17\|chr19 (46462148-46462546)
	24-428, gnl\|Mm7\|chr7 (22528766-22528370)

	187-303, gnl\|bosTau2\|chr17 (9202094-9202210)
	187-303, gnl\|Hg17\|chr19 (46462311-46462420)
	187-303, gnl\|Mm7\|chr7 (22528604-22528489)

	550-706, gnl\|bosTau2\|chr18 (45761923-45762079)
	550-706, gnl\|Hg17\|chr19 (46469825-46469981)
	550-706, gnl\|Mm7\|chr7 (22522510-22522354)