Non-Coding RNA Search

Ss1.1-Liv1-LVR01F010092.5

Sequence:


               
               AAAATTTTAAACCAGAGTGTTATCTGTGACAGCTTCTGTCAACCTTATCTGTTCCCCTCA
TTTTCCCACACTCCTAGGACAAGTTGGGGGGTCAGAAAACTGGACCTATATTCTTTCCTC
GTGAGCCTCGGACCCAGGCCAGTGCCCTGTCACAGCCTTGAGAAACCTGGAAAATCACAG
AAGAGGGAGTGGAAGACAATAGTGGTTGCTGTCTCCAGCTGCACGCAGCAGGGATGAGGC
TCGGCACTATTTTGGGTGGTGTAGACCCCGCCCCCACTCCGAACGCACCCTGGCCCTACG
GCGGCAGCTGGAGGGGTCCCGCTGCGACTGTTGGGGCCGCACCTCGGACCTGAGCCGCCG
CCGCATCTGCAGCCATGTCGGGCCGCTCGGTGCCACATGCCCACCCGGCCACCACTGAGT
ACGAGTTTGCCAACCCGAGCCGCCTGGGTGAGCAGCGCTTCGGGGAAGGCCTCCTGCCAG
AAGAGATCCTGACCCCCACCCTCTACCACGGCTACTACGTCCGGCCACGGGCAGCCCAAG
CGGCGGAGGGCAGCAGGGCGGGGGCCTCGGAGCTTCGGCTTAGTGAGGGCAAGTTCCAGG
CCTTTCTGGATGTGAGCCACTTCACCCCAGATGAGGTGACCGTGAGGACTGTGGACAACC
TGCTGGAGGTGTCTGCCCGGCACCCCCAGCGCCTGGACCGCCACGGCTTCGTGTCCCGAG
AATTCTGCCGCACCTACGTCCTGCCTGCGGATGTGGACCCCTGGCGCGTCCGCGCCGCGC
TCTCCCACGACGGCATCCTCAACCTGGAGGCGCCTCGGGGTGGCCGACATTTGGACACAG
AGGTCAATGAGGTCTACATCTCCCTGCTCCCTGCACCTCCTGATCCAGAGGAAGAGGAGG
AGGCAGCCGGCGTTGAGCCCTGAATGTCACAGACCCAGCACCCAGTTGAACCCCTTGCTA
GCCCCCGCCCCCACGGTGATACGGAGCAGCTGCCCACCACCCTAGAGGTAGCAGCATCCT
TGGGGGAAGGGAGAAGTGCATGGTCCACAATGTATGGTTTGGTCCCTTGGGACGTGTCAT
AGCGTTTTTTCGTTTAGTTTAGGGTGGAGCTGAATAAACCCAAATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATTTTAAACCAGAGTGTTATCTGTGACAGCTTCTGTCAACCTTATCTGTTCCCCTCA
TTTTCCCACACTCCTAGGACAAGTTGGGGGGTCAGAAAACTGGACCTATATTCTTTCCTC
GTGAGCCTCGGACCCAGGCCAGTGCCCTGTCACAGCCTTGAGAAACCTGGAAAATCACAG
AAGAGGGAGTGGAAGACAATAGTGGTTGCTGTCTCCAGCTGCACGCAGCAGGGATGAGGC
TCGGCACTATTTTGGGTGGTGTAGACCCCGCCCCCACTCCGAACGCACCCTGGCCCTACG
GCGGCAGCTGGAGGGGTCCCGCTGCGACTGTTGGGGCCGCACCTCGGACCTGAGCCGCCG
CCGCATCTGCAGCCATGTCGGGCCGCTCGGTGCCACATGCCCACCCGGCCACCACTGAGT
ACGAGTTTGCCAACCCGAGCCGCCTGGGTGAGCAGCGCTTCGGGGAAGGCCTCCTGCCAG
AAGAGATCCTGACCCCCACCCTCTACCACGGCTACTACGTCCGGCCACGGGCAGCCCAAG
CGGCGGAGGGCAGCAGGGCGGGGGCCTCGGAGCTTCGGCTTAGTGAGGGCAAGTTCCAGG
CCTTTCTGGATGTGAGCCACTTCACCCCAGATGAGGTGACCGTGAGGACTGTGGACAACC
TGCTGGAGGTGTCTGCCCGGCACCCCCAGCGCCTGGACCGCCACGGCTTCGTGTCCCGAG
AATTCTGCCGCACCTACGTCCTGCCTGCGGATGTGGACCCCTGGCGCGTCCGCGCCGCGC
TCTCCCACGACGGCATCCTCAACCTGGAGGCGCCTCGGGGTGGCCGACATTTGGACACAG
AGGTCAATGAGGTCTACATCTCCCTGCTCCCTGCACCTCCTGATCCAGAGGAAGAGGAGG
AGGCAGCCGGCGTTGAGCCCTGAATGTCACAGACCCAGCACCCAGTTGAACCCCTTGCTA
GCCCCCGCCCCCACGGTGATACGGAGCAGCTGCCCACCACCCTAGAGGTAGCAGCATCCT
TGGGGGAAGGGAGAAGTGCATGGTCCACAATGTATGGTTTGGTCCCTTGGGACGTGTCAT
AGCGTTTTTTCGTTTAGTTTAGGGTGGAGCTGAATAAACCCAAATCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6I9U7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6I9U7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               467-705, - strand, RNAz p=0.945982

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               467-705, - strand, RNAz p=0.945982

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               5-236, gnl|bosTau2|chr15 (8350692-8350454)
               

               
               5-236, gnl|canFam2|chr5 (24192487-24191926)
               

               
               5-236, gnl|dasNov1|scaffold_32401 (3746-3213)
               

               
               5-236, gnl|echTel1|scaffold_183054 (7040-7583)
               

               
               5-236, gnl|hg17|chr11 (111286461-111287008)
               

               
               5-236, gnl|Hg17|chr11 (111286849-111287052)
               

               
               5-236, gnl|mm7|chr9 (50733020-50732476)
               

               
               5-236, gnl|Mm7|chr9 (50732628-50732430)
               

               
               5-236, gnl|monDom2|scaffold_2 (129951514-129950865)
               

               
               5-236, gnl|oryCun1|scaffold_211749 (231026-231521)
               

               
               5-236, gnl|panTro1|chr9 (113294704-113295251)
               

               
               5-236, gnl|rheMac2|chr14 (110379317-110379866)
               

               
               5-236, gnl|rn3|chr8 (54128046-54127522)
               


               
               467-1128, gnl|bosTau2|chr15 (8348247-8347579)
               

               
               467-1128, gnl|Hg17|chr11 (111289373-111290022)
               

               
               467-1128, gnl|Mm7|chr9 (50730317-50729665)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-236, gnl|bosTau2|chr15 (8350692-8350454)
               

               
               5-236, gnl|canFam2|chr5 (24192487-24191926)
               

               
               5-236, gnl|dasNov1|scaffold_32401 (3746-3213)
               

               
               5-236, gnl|echTel1|scaffold_183054 (7040-7583)
               

               
               5-236, gnl|hg17|chr11 (111286461-111287008)
               

               
               5-236, gnl|Hg17|chr11 (111286849-111287052)
               

               
               5-236, gnl|mm7|chr9 (50733020-50732476)
               

               
               5-236, gnl|Mm7|chr9 (50732628-50732430)
               

               
               5-236, gnl|monDom2|scaffold_2 (129951514-129950865)
               

               
               5-236, gnl|oryCun1|scaffold_211749 (231026-231521)
               

               
               5-236, gnl|panTro1|chr9 (113294704-113295251)
               

               
               5-236, gnl|rheMac2|chr14 (110379317-110379866)
               

               
               5-236, gnl|rn3|chr8 (54128046-54127522)
               


               
               467-1128, gnl|bosTau2|chr15 (8348247-8347579)
               

               
               467-1128, gnl|Hg17|chr11 (111289373-111290022)
               

               
               467-1128, gnl|Mm7|chr9 (50730317-50729665)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               eru (0.360144)
               

               
               cli (0.305623)
               

               
               cag (0.302389)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fhi (0.169578)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.360144)
               

               
               cli (0.305623)
               

               
               cag (0.302389)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fhi (0.169578)
               

               
               ldo (0.0970026)

	5-236, gnl\|bosTau2\|chr15 (8350692-8350454)
	5-236, gnl\|canFam2\|chr5 (24192487-24191926)
	5-236, gnl\|dasNov1\|scaffold_32401 (3746-3213)
	5-236, gnl\|echTel1\|scaffold_183054 (7040-7583)
	5-236, gnl\|hg17\|chr11 (111286461-111287008)
	5-236, gnl\|Hg17\|chr11 (111286849-111287052)
	5-236, gnl\|mm7\|chr9 (50733020-50732476)
	5-236, gnl\|Mm7\|chr9 (50732628-50732430)
	5-236, gnl\|monDom2\|scaffold_2 (129951514-129950865)
	5-236, gnl\|oryCun1\|scaffold_211749 (231026-231521)
	5-236, gnl\|panTro1\|chr9 (113294704-113295251)
	5-236, gnl\|rheMac2\|chr14 (110379317-110379866)
	5-236, gnl\|rn3\|chr8 (54128046-54127522)

	467-1128, gnl\|bosTau2\|chr15 (8348247-8347579)
	467-1128, gnl\|Hg17\|chr11 (111289373-111290022)
	467-1128, gnl\|Mm7\|chr9 (50730317-50729665)

	eru (0.360144)
	cli (0.305623)
	cag (0.302389)
	nms (0.213858)
	mas (0.210305)
	fhi (0.169578)
	ldo (0.0970026)