Non-Coding RNA Search

Ss1.1-Liv1-LVR01F030084.5.5

Sequence:


               
               ACACAGAATCTCCGCAGATTCCAAAGATGCGGGTCAGGGGCCCTCAAGCCATCCTCATTC
TGCTGTCGGGGGCCCTGGCCCTGACCGGGACCTGGGCGGGTCCCCACTCCCTGAGCTATT
TCTCCACCGCCGTGTCCCGGCCCGACCGCGGGGAGCCCCGCTTCATCGCCGTCGGCTACG
TGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCCAATCCGCGGATGGAGCCGC
GGGCGCCGTGGATACAGCAGGAGGGGCAGGACTATTGGGATCGGGAGACGCGGAACGTCA
TGGGCAGCGCACAGACTGACCGAGTGAACCTGAAGACCCTGCGCGGCTACTACAACCAGA
GCGAGGCCGGGTCTCACACCATCCAGAGCATGTACGGCTGCGACGTGGGGCCAGACGGGC
TCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACG
AGGACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGTGGG
AGGCGGCCAATGTGGCGGAGCGCATGAGGAGCTACCTGCAGGGCCTGTGTGTGGAGGGGC
TCCAGAAATACCTGCAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACAC
ATGTGACCCGCCACCCCAGCTCTGACCTGGGGGTCACCTTGAGGTGCTGGGCCCTGGGCT
TCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCAGGACCAGAGCCAGGACA
TGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACAGAATCTCCGCAGATTCCAAAGATGCGGGTCAGGGGCCCTCAAGCCATCCTCATTC
TGCTGTCGGGGGCCCTGGCCCTGACCGGGACCTGGGCGGGTCCCCACTCCCTGAGCTATT
TCTCCACCGCCGTGTCCCGGCCCGACCGCGGGGAGCCCCGCTTCATCGCCGTCGGCTACG
TGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCCAATCCGCGGATGGAGCCGC
GGGCGCCGTGGATACAGCAGGAGGGGCAGGACTATTGGGATCGGGAGACGCGGAACGTCA
TGGGCAGCGCACAGACTGACCGAGTGAACCTGAAGACCCTGCGCGGCTACTACAACCAGA
GCGAGGCCGGGTCTCACACCATCCAGAGCATGTACGGCTGCGACGTGGGGCCAGACGGGC
TCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACG
AGGACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGTGGG
AGGCGGCCAATGTGGCGGAGCGCATGAGGAGCTACCTGCAGGGCCTGTGTGTGGAGGGGC
TCCAGAAATACCTGCAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACAC
ATGTGACCCGCCACCCCAGCTCTGACCTGGGGGTCACCTTGAGGTGCTGGGCCCTGGGCT
TCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCAGGACCAGAGCCAGGACA
TGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|5690003|emb|CAB51873.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|5690003|emb|CAB51873.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               103-370, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               103-370, gnl|Hg17|chr6 (30335574-30335841)
               

               
               103-370, gnl|Mm7|chr17 (33571220-33571487)
               


               
               403-653, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               403-653, gnl|Hg17|chr6 (31347071-31346829)
               

               
               403-653, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-370, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               103-370, gnl|Hg17|chr6 (30335574-30335841)
               

               
               103-370, gnl|Mm7|chr17 (33571220-33571487)
               


               
               403-653, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               403-653, gnl|Hg17|chr6 (31347071-31346829)
               

               
               403-653, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cov (0.396458)
               

               
               csp (0.161186)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               csp (0.161186)

	103-370, gnl\|bosTau2\|chr23 (21180741-21180474)
	103-370, gnl\|Hg17\|chr6 (30335574-30335841)
	103-370, gnl\|Mm7\|chr17 (33571220-33571487)

	403-653, gnl\|bosTau2\|chr20 (36655627-36655873)
	403-653, gnl\|Hg17\|chr6 (31347071-31346829)
	403-653, gnl\|Mm7\|chr17 (32077846-32077606)