Non-Coding RNA Search

Ss1.1-Liv1-LVR01F060090.5

Sequence:


               
               GGTTTGTCCCCTTTTCGGCTTCCGTAGAGGAAGTCGCGGGGACCTGCATCTGGGGTTTCG
GTGCCCCCCCCTTCCCGGGGGTCCGGGGGTGACATTGCACCGCGCCCCTTACGGGGTCGC
GTCGCCAACGAACGCGGACACTCTAGTTGGCGTGCTCCTCCCCTTCGCCTCTCTTAGCCA
GGCCTCCACCCCGCCCCCAGCTGCCCAGCCATGGGGGCCGCAGTGTTTTTTGGATGCACT
TTCGTCGCTTTCGGTCCAGCCTTTGCGCTTTTCTTGATCACTGTGGCCGGAGACCCGCTT
CGTGTCATCATCCTAGTCGCTGGGGCATTTTTCTGGCTGGTCTCCTTGCTCTTGGCCTCT
GTAGTCTGGTTCATCTTGGTCCATGTGACCGACCGGTCAGATGCCCGGCTCCAGTATGGC
CTCCTGATTTTTGGTGCTGCAGTTTCTGTCCTTCTACAGGAGGTGTTCCGCTTTGCCTAC
TACAAGCTGCTTAAGAAGGCAGATGAGGGGTTAGCATCGCTGAGTGAGGACGGAAGATCA
CCCATCTCCATCCGGCAGATGGCCTATGTTTCTGGTCTTTCCTTCGGTATCATCAGTGGT
GTCTTCTCTGTTATCAATATTTTGGCTGATGCACTTGGGCCAGGTGTGGTTGGGATCCAT
GGAGACTCACCCTATTACTTCTTGACTTCAGCCTTTCTGACAGCAGCCATTATCCTGCTC
CATACCTTTTGGGGAGTCGTGTTCTTTGATGCCTGTGAGAGGAGACGGTACTGGGCTTTG
GGCCTGGTGGTTGGGAGTCACCTACTGACATCAGGACTGACATTCCTGAACCCTTGGTAC
GAGGCAAGCCTGCTGCCCATCTATGCAGTCACTGTTTCCATGGGGCTCTGGGCCTTCATC
ACAGCTGGAGGGTCCTTCCGAAGTATCCAGCGCAGTCTCTCGTGTAAGGACTGACTACCT
GGACTGATCGCCTGACAGATCCCACCTGCCTGCCCACTGCCCATGACTGAGCCCAGCCCC
ACCCGGGTCCATTGCCCATCATTCTCTGTCTCCTCGTCGGTCTTTTCCACCACCTTCAGG
GTTTTGCTTTGTCCACTCGTGACCTTTAGTCTTTAGGCTTTACCAGGAGCAGTCTGGGTT
CAGCCAGTCAGTGACTGGTGGGTTTGAATCTGCCCTTATCCCCACCATCTGGGGACCCCC
TTTGTTGTCCAGGACTCCCCATGTGTCAGTGCTCTGCTCTCACCCTGCCCAAGACTCACC
CCCCTTCCCCTCTGCAGGCCGACGGCAGGAGGACAGTCGGGTGATGGTGTATTCTGCCCT
GCGCATCCCACCCGAGGACTGAGGGAACCTTGGGGGGGACCCCTGGGCCTGGGGTGCCCT
CCTGATCTCCTCGCCCTGTATTTCTCCATCTCCAGTTCTGGACAGTGCAGGTTGCCAAGA
AAAGGGACCTAGTGTAGCCATTGCCATGGAGATGAAGTCAATGGAGGTTCAAGGGTAGAT
GAGCTCTGAGTTTCCCAGTACCCCTTCCCCAGACTGGGCATCTTGGTCTTTTTCTCAGGT
CTGAGGGGAACCATATTTGGTGTGATAAAGACCCCAAATTGCCTTTTTTTTTTTTTTTTT
TTTTTTTTTTGACTGGGGGAGGGAGGAGGTATATTGGAATTCTTCTCCTAACCTCTGTGG
ACTGTAATTTCCCTCCTCAAATTGCTCCTTATGTCTGGGCTCATATCTATCCAGCTTTCC
CCTTGGTCCCAGGCTTTGGGGGAAGGGAAGGAAGTGCATGTTTGGGAACTGGTATTACTG
GAACTAAAAAATGTTTTAACCTCCTTGACCACCAGCATCCCTCCTCTCCCCAAGGTGAAG
TGGAGGGTGCTGCGGGGAGCTGGCCCACTCCAGAGCTGCAGTGCCACTGGAGGAGTCAGC
CTACCGTGACATCACAGGGAAGGAGGGCAGATTTTTTCTAGTTTTTAATTGGGGTGTTTG
GGGGGTGGGGAAGTTTTCTATAAACTGTATCATTTTCTGCTGAGGATGGCATGTCCCATC
CTTTTAATCAAGGTGATTGTGATTTTGACTAATAAAAAGGACTTTATAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTGTCCCCTTTTCGGCTTCCGTAGAGGAAGTCGCGGGGACCTGCATCTGGGGTTTCG
GTGCCCCCCCCTTCCCGGGGGTCCGGGGGTGACATTGCACCGCGCCCCTTACGGGGTCGC
GTCGCCAACGAACGCGGACACTCTAGTTGGCGTGCTCCTCCCCTTCGCCTCTCTTAGCCA
GGCCTCCACCCCGCCCCCAGCTGCCCAGCCATGGGGGCCGCAGTGTTTTTTGGATGCACT
TTCGTCGCTTTCGGTCCAGCCTTTGCGCTTTTCTTGATCACTGTGGCCGGAGACCCGCTT
CGTGTCATCATCCTAGTCGCTGGGGCATTTTTCTGGCTGGTCTCCTTGCTCTTGGCCTCT
GTAGTCTGGTTCATCTTGGTCCATGTGACCGACCGGTCAGATGCCCGGCTCCAGTATGGC
CTCCTGATTTTTGGTGCTGCAGTTTCTGTCCTTCTACAGGAGGTGTTCCGCTTTGCCTAC
TACAAGCTGCTTAAGAAGGCAGATGAGGGGTTAGCATCGCTGAGTGAGGACGGAAGATCA
CCCATCTCCATCCGGCAGATGGCCTATGTTTCTGGTCTTTCCTTCGGTATCATCAGTGGT
GTCTTCTCTGTTATCAATATTTTGGCTGATGCACTTGGGCCAGGTGTGGTTGGGATCCAT
GGAGACTCACCCTATTACTTCTTGACTTCAGCCTTTCTGACAGCAGCCATTATCCTGCTC
CATACCTTTTGGGGAGTCGTGTTCTTTGATGCCTGTGAGAGGAGACGGTACTGGGCTTTG
GGCCTGGTGGTTGGGAGTCACCTACTGACATCAGGACTGACATTCCTGAACCCTTGGTAC
GAGGCAAGCCTGCTGCCCATCTATGCAGTCACTGTTTCCATGGGGCTCTGGGCCTTCATC
ACAGCTGGAGGGTCCTTCCGAAGTATCCAGCGCAGTCTCTCGTGTAAGGACTGACTACCT
GGACTGATCGCCTGACAGATCCCACCTGCCTGCCCACTGCCCATGACTGAGCCCAGCCCC
ACCCGGGTCCATTGCCCATCATTCTCTGTCTCCTCGTCGGTCTTTTCCACCACCTTCAGG
GTTTTGCTTTGTCCACTCGTGACCTTTAGTCTTTAGGCTTTACCAGGAGCAGTCTGGGTT
CAGCCAGTCAGTGACTGGTGGGTTTGAATCTGCCCTTATCCCCACCATCTGGGGACCCCC
TTTGTTGTCCAGGACTCCCCATGTGTCAGTGCTCTGCTCTCACCCTGCCCAAGACTCACC
CCCCTTCCCCTCTGCAGGCCGACGGCAGGAGGACAGTCGGGTGATGGTGTATTCTGCCCT
GCGCATCCCACCCGAGGACTGAGGGAACCTTGGGGGGGACCCCTGGGCCTGGGGTGCCCT
CCTGATCTCCTCGCCCTGTATTTCTCCATCTCCAGTTCTGGACAGTGCAGGTTGCCAAGA
AAAGGGACCTAGTGTAGCCATTGCCATGGAGATGAAGTCAATGGAGGTTCAAGGGTAGAT
GAGCTCTGAGTTTCCCAGTACCCCTTCCCCAGACTGGGCATCTTGGTCTTTTTCTCAGGT
CTGAGGGGAACCATATTTGGTGTGATAAAGACCCCAAATTGCCTTTTTTTTTTTTTTTTT
TTTTTTTTTTGACTGGGGGAGGGAGGAGGTATATTGGAATTCTTCTCCTAACCTCTGTGG
ACTGTAATTTCCCTCCTCAAATTGCTCCTTATGTCTGGGCTCATATCTATCCAGCTTTCC
CCTTGGTCCCAGGCTTTGGGGGAAGGGAAGGAAGTGCATGTTTGGGAACTGGTATTACTG
GAACTAAAAAATGTTTTAACCTCCTTGACCACCAGCATCCCTCCTCTCCCCAAGGTGAAG
TGGAGGGTGCTGCGGGGAGCTGGCCCACTCCAGAGCTGCAGTGCCACTGGAGGAGTCAGC
CTACCGTGACATCACAGGGAAGGAGGGCAGATTTTTTCTAGTTTTTAATTGGGGTGTTTG
GGGGGTGGGGAAGTTTTCTATAAACTGTATCATTTTCTGCTGAGGATGGCATGTCCCATC
CTTTTAATCAAGGTGATTGTGATTTTGACTAATAAAAAGGACTTTATAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26347159|dbj|BAC37228.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26347159|dbj|BAC37228.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-308, - strand, RNAz p=0.959382
               

               
               1130-1959, + strand, RNAz p=0.996616

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-308, - strand, RNAz p=0.959382
               

               
               1130-1959, + strand, RNAz p=0.996616

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC009501, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC009501, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-324, gnl|bosTau2|chr3 (17187586-17187915)
               

               
               1-324, gnl|Hg17|chr1 (147054499-147054170)
               

               
               1-324, gnl|Mm7|chr3 (95767907-95768234)
               


               
               568-691, gnl|bosTau2|chr3 (17189352-17189475)
               

               
               568-691, gnl|Hg17|chr1 (147052952-147052829)
               

               
               568-691, gnl|Mm7|chr3 (95769397-95769520)
               


               
               819-2089, gnl|bosTau2|chr3 (17190164-17191430)
               

               
               819-2089, gnl|Hg17|chr1 (147052130-147050877)
               

               
               819-2089, gnl|Mm7|chr3 (95770186-95771414)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-324, gnl|bosTau2|chr3 (17187586-17187915)
               

               
               1-324, gnl|Hg17|chr1 (147054499-147054170)
               

               
               1-324, gnl|Mm7|chr3 (95767907-95768234)
               


               
               568-691, gnl|bosTau2|chr3 (17189352-17189475)
               

               
               568-691, gnl|Hg17|chr1 (147052952-147052829)
               

               
               568-691, gnl|Mm7|chr3 (95769397-95769520)
               


               
               819-2089, gnl|bosTau2|chr3 (17190164-17191430)
               

               
               819-2089, gnl|Hg17|chr1 (147052130-147050877)
               

               
               819-2089, gnl|Mm7|chr3 (95770186-95771414)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               amn (0.417711)
               

               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               cty (0.31224)
               

               
               cli (0.305623)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               cty (0.31224)
               

               
               cli (0.305623)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	1-308, - strand, RNAz p=0.959382
	1130-1959, + strand, RNAz p=0.996616

	1-324, gnl\|bosTau2\|chr3 (17187586-17187915)
	1-324, gnl\|Hg17\|chr1 (147054499-147054170)
	1-324, gnl\|Mm7\|chr3 (95767907-95768234)

	568-691, gnl\|bosTau2\|chr3 (17189352-17189475)
	568-691, gnl\|Hg17\|chr1 (147052952-147052829)
	568-691, gnl\|Mm7\|chr3 (95769397-95769520)

	819-2089, gnl\|bosTau2\|chr3 (17190164-17191430)
	819-2089, gnl\|Hg17\|chr1 (147052130-147050877)
	819-2089, gnl\|Mm7\|chr3 (95770186-95771414)

	amn (0.417711)
	ill (0.351185)
	jca (0.34188)
	cty (0.31224)
	cli (0.305623)
	eep (0.245128)
	ebs (0.236602)
	ece (0.229305)
	mas (0.210305)
	jej (0.197844)
	nlu (0.191681)
	ton (0.1755)
	cki (0.165235)
	cag (0.151194)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	che (0.136314)
	cov (0.132153)
	clu (0.119646)
	pgl (0.118483)
	ecc (0.115035)