Ss1.1-Liv1-LVR01G050087.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTAGAGATCAAAGCCAGCGGCAGTGGAAGAGGCACCATCTCGATCCTGACCATGTACTA CAGGTCCCCAGAGTTCTGGAAGGACACCTGTAACCTGTACCATCTGAATGTGACTCTTCA CACAGCCCAAGAAGAGAATAAAAAGGGGGAAGAGACCTTTCAGCTCCGGATGAAAACAAG ATTCCAGGGTTATCGAGAGGCCACAATGACCATCATGGAGGTCTCCCTGCTCACCGGCTT CTACCCCAACCAAGATGACCTCAAACAGCTCACAAGTGAAGTGGAGAGGTACGCTTTCCA GTACGAGACCAAGACGACCACCAGCGACAGCACCGTGGTCCTCTACCTGGAGAAGCTCTC CCACAAGGAAGACACGGTGCTGGGTTTCCGGATCCACAGGATGCTGCAGGCGGAGTTCCT GCAGTCCGCCCAGGTCACGGTCTACGACTACTACGAACCTTCCCGCAGGTGCAGCTCCTT CTACAACCTGCCCACAGAGGACTCTTCCCTGCGGAAGATCTGCCATAAAGACGTCTGCAG ATGTGCCGAGGAACAGTGCCCATCTCCTAAGAAGGACAGCAACCATGTGAGGCAAGAGGA GCTCCAGGTAGCAGCCTGTGAGATAGGCGTGGACTTTGTGTACAAGGCCAGGCTGGAGTC TGTGGAAGCCTCCACCTCCAACCCCTACATCTACTACAACATGCAGCTCCAAGCCATCAT CAAGAGTGGCACAGACTCTGTCAAATCCCTTACCATGAAGAAATTCGTTTCCCACACCAC CTGCCATGACTCCCTGGGGCTGGAAGAAAATGAGACATATCTCATCATGGGCCAGACATC AGACCTGTGGAGAGTCAAATCTGAATATACTCATGTCCTGGGTAAGGAGACATTCCTCAT GCACTGGCCGGCGGAAGGGACAGCGGGCAAGAAGGAATTGCTGGACCAGCTGGAGGGGTT TTCGGAATATATGCGTACCCATGGCTGTGAGTCCTGAGATCTGGAGGCCTCTGCTATTCT CAGGGAGTTGTCTCCAAGCAGGCCCGGGGCCACTGGGCTTAACCCCAATAAAGAGCATGG GCTATCTTGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTAGAGATCAAAGCCAGCGGCAGTGGAAGAGGCACCATCTCGATCCTGACCATGTACTA CAGGTCCCCAGAGTTCTGGAAGGACACCTGTAACCTGTACCATCTGAATGTGACTCTTCA CACAGCCCAAGAAGAGAATAAAAAGGGGGAAGAGACCTTTCAGCTCCGGATGAAAACAAG ATTCCAGGGTTATCGAGAGGCCACAATGACCATCATGGAGGTCTCCCTGCTCACCGGCTT CTACCCCAACCAAGATGACCTCAAACAGCTCACAAGTGAAGTGGAGAGGTACGCTTTCCA GTACGAGACCAAGACGACCACCAGCGACAGCACCGTGGTCCTCTACCTGGAGAAGCTCTC CCACAAGGAAGACACGGTGCTGGGTTTCCGGATCCACAGGATGCTGCAGGCGGAGTTCCT GCAGTCCGCCCAGGTCACGGTCTACGACTACTACGAACCTTCCCGCAGGTGCAGCTCCTT CTACAACCTGCCCACAGAGGACTCTTCCCTGCGGAAGATCTGCCATAAAGACGTCTGCAG ATGTGCCGAGGAACAGTGCCCATCTCCTAAGAAGGACAGCAACCATGTGAGGCAAGAGGA GCTCCAGGTAGCAGCCTGTGAGATAGGCGTGGACTTTGTGTACAAGGCCAGGCTGGAGTC TGTGGAAGCCTCCACCTCCAACCCCTACATCTACTACAACATGCAGCTCCAAGCCATCAT CAAGAGTGGCACAGACTCTGTCAAATCCCTTACCATGAAGAAATTCGTTTCCCACACCAC CTGCCATGACTCCCTGGGGCTGGAAGAAAATGAGACATATCTCATCATGGGCCAGACATC AGACCTGTGGAGAGTCAAATCTGAATATACTCATGTCCTGGGTAAGGAGACATTCCTCAT GCACTGGCCGGCGGAAGGGACAGCGGGCAAGAAGGAATTGCTGGACCAGCTGGAGGGGTT TTCGGAATATATGCGTACCCATGGCTGTGAGTCCTGAGATCTGGAGGCCTCTGCTATTCT CAGGGAGTTGTCTCCAAGCAGGCCCGGGGCCACTGGGCTTAACCCCAATAAAGAGCATGG GCTATCTTGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 966-1092, - strand, RNAz p=0.802904 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 966-1092, - strand, RNAz p=0.802904 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 144-268, gnl|bosTau2|chr7 (9708363-9708243) | |
| 144-268, gnl|canFam2|chr20 (53999402-53998886) | |
| 144-268, gnl|hg17|chr19 (10041519-10042080) | |
| 144-268, gnl|Hg17|chr19 (10041935-10042054) | |
| 144-268, gnl|loxAfr1|scaffold_11861 (55489-56056) | |
| 144-268, gnl|Mm7|chr17 (55418205-55418106) | |
| 144-268, gnl|oryCun1|scaffold_197948 (4669-4270) | |
| 144-268, gnl|panTro1|chr20 (10409646-10410206) | |
| 144-268, gnl|rheMac2|chr19 (9871084-9871680) | |
| 354-461, gnl|bosTau2|chr7 (9707655-9707548) | |
| 354-461, gnl|Hg17|chr19 (10042656-10042763) | |
| 354-461, gnl|Mm7|chr17 (55416871-55416764) | |
| 728-864, gnl|bosTau2|chr7 (9706141-9706005) | |
| 728-864, gnl|canFam2|chr20 (53997478-53996824) | |
| 728-864, gnl|echTel1|scaffold_192134 (3034-3663) | |
| 728-864, gnl|hg17|chr19 (10044502-10045160) | |
| 728-864, gnl|Hg17|chr19 (10044975-10045111) | |
| 728-864, gnl|oryCun1|scaffold_197948 (3025-2388) | |
| 728-864, gnl|panTro1|chr20 (10412643-10413301) | |
| 728-864, gnl|rheMac2|chr19 (9873693-9874361) | |
| 865-1092, gnl|bosTau2|chr7 (9705584-9705356) | |
| 865-1092, gnl|canFam2|chr20 (53996494-53996293) | |
| 865-1092, gnl|hg17|chr19 (10045550-10045743) | |
| 865-1092, gnl|Hg17|chr19 (10045593-10045811) | |
| 865-1092, gnl|loxAfr1|scaffold_11861 (59011-59214) | |
| 865-1092, gnl|mm7|chr9 (20737157-20737305) | |
| 865-1092, gnl|panTro1|chr20 (10413690-10413883) | |
| 865-1092, gnl|rheMac2|chr19 (9874755-9874948) | |
| 865-1092, gnl|rn3|chr8 (19885337-19885505) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 144-268, gnl|bosTau2|chr7 (9708363-9708243) | |
| 144-268, gnl|canFam2|chr20 (53999402-53998886) | |
| 144-268, gnl|hg17|chr19 (10041519-10042080) | |
| 144-268, gnl|Hg17|chr19 (10041935-10042054) | |
| 144-268, gnl|loxAfr1|scaffold_11861 (55489-56056) | |
| 144-268, gnl|Mm7|chr17 (55418205-55418106) | |
| 144-268, gnl|oryCun1|scaffold_197948 (4669-4270) | |
| 144-268, gnl|panTro1|chr20 (10409646-10410206) | |
| 144-268, gnl|rheMac2|chr19 (9871084-9871680) | |
| 354-461, gnl|bosTau2|chr7 (9707655-9707548) | |
| 354-461, gnl|Hg17|chr19 (10042656-10042763) | |
| 354-461, gnl|Mm7|chr17 (55416871-55416764) | |
| 728-864, gnl|bosTau2|chr7 (9706141-9706005) | |
| 728-864, gnl|canFam2|chr20 (53997478-53996824) | |
| 728-864, gnl|echTel1|scaffold_192134 (3034-3663) | |
| 728-864, gnl|hg17|chr19 (10044502-10045160) | |
| 728-864, gnl|Hg17|chr19 (10044975-10045111) | |
| 728-864, gnl|oryCun1|scaffold_197948 (3025-2388) | |
| 728-864, gnl|panTro1|chr20 (10412643-10413301) | |
| 728-864, gnl|rheMac2|chr19 (9873693-9874361) | |
| 865-1092, gnl|bosTau2|chr7 (9705584-9705356) | |
| 865-1092, gnl|canFam2|chr20 (53996494-53996293) | |
| 865-1092, gnl|hg17|chr19 (10045550-10045743) | |
| 865-1092, gnl|Hg17|chr19 (10045593-10045811) | |
| 865-1092, gnl|loxAfr1|scaffold_11861 (59011-59214) | |
| 865-1092, gnl|mm7|chr9 (20737157-20737305) | |
| 865-1092, gnl|panTro1|chr20 (10413690-10413883) | |
| 865-1092, gnl|rheMac2|chr19 (9874755-9874948) | |
| 865-1092, gnl|rn3|chr8 (19885337-19885505) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) |