Non-Coding RNA Search

Ss1.1-Liv1-LVR01G090087.5

Sequence:


               
               TCACAGCCGGGTCGGCTCGGGGCGTTGATGAAGGTGCAGGAAGGGCAGGACCAGCCGGGC
TAGGGAGGTGAGGAGTTGCTGCTGACCCTGCCCTGTCAGTGCCCACTGCTGCCTGGGCCC
ACCCTGCCCGGGCCCCTGCCCACCTGAAGGGGGGTGGGGAGGCTGGAGCTGGCAGGCTGA
GGGGCTCGGGGCAGCCCCAAGGACTGAGGAAACAGGCGGCCCAGGTCCCCCTCCGTCTTA
TGGGGGCGCTGAGGATTGCGTCCTGGGGCTTCTCGGGGGGCTGAAAGCAGGTAGAGAAAG
GCCGGGTCCCCGTCCCTCCGGACCCCATAGGAAGCAAGGCTGCACTCAGGGGCACACAGG
CACCTCCCAATGACCCAGCGCTGCACGGCCGGAGGGAAGCCAAACTCTGAGAAGACCTGC
TCCTGGAGGGCCCTGACGGTGCAGTGGGGGTGGACCTGCAGCGAGACATGGGCAGAGGAT
GCAGCGTCTTCAACCGTGACCTGTAGCCTGACGGGGCCAGGCGGGAAGCAGGCCTCCTGC
AGCTGGATCCTGAGGGCCGCGTGGTGCTGGGCCAGGGTGGCGGCTGCCTCGGCTGCCCGC
TTCTCATCCCCACTTTCTATGGCCTGAGCCAGGCGCCCTGCCAGCTCTTCATTCTGTCCT
TCCATGGTGGCACTGCGGACCAGGGCTGCCCACCGCTGAGCTTCCTGCGGATCCGTGAAG
TGCAGGCCGAGGGTCCCAGGCCCTCCTGGTGGAGGCTGCAGCTCATGCTGGCTGGGGCCT
CGGACGGTGTAGTAAACTGACTCCAAGGGCCACTCCAAACCTACCGCCCCGTGTCCCGCG
CCCAGCAGCTCCAGCCGGAAGCGCCCCGGTCGCTCGGGGTCCGCGCTCAGCTGCAGCCTC
CGCAGCTGCGCCTCGGCGTCCGGCCCCGCGCCCAGCGGCCTCACCGCGGCGTGCACGGCC
AAGAGCACCGCCGGCGAGCCCGGGTCCGAGGAGGCGGCCGCGCCGCCCGCTGGAGGCGCC
ATCTCCGGTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACAGCCGGGTCGGCTCGGGGCGTTGATGAAGGTGCAGGAAGGGCAGGACCAGCCGGGC
TAGGGAGGTGAGGAGTTGCTGCTGACCCTGCCCTGTCAGTGCCCACTGCTGCCTGGGCCC
ACCCTGCCCGGGCCCCTGCCCACCTGAAGGGGGGTGGGGAGGCTGGAGCTGGCAGGCTGA
GGGGCTCGGGGCAGCCCCAAGGACTGAGGAAACAGGCGGCCCAGGTCCCCCTCCGTCTTA
TGGGGGCGCTGAGGATTGCGTCCTGGGGCTTCTCGGGGGGCTGAAAGCAGGTAGAGAAAG
GCCGGGTCCCCGTCCCTCCGGACCCCATAGGAAGCAAGGCTGCACTCAGGGGCACACAGG
CACCTCCCAATGACCCAGCGCTGCACGGCCGGAGGGAAGCCAAACTCTGAGAAGACCTGC
TCCTGGAGGGCCCTGACGGTGCAGTGGGGGTGGACCTGCAGCGAGACATGGGCAGAGGAT
GCAGCGTCTTCAACCGTGACCTGTAGCCTGACGGGGCCAGGCGGGAAGCAGGCCTCCTGC
AGCTGGATCCTGAGGGCCGCGTGGTGCTGGGCCAGGGTGGCGGCTGCCTCGGCTGCCCGC
TTCTCATCCCCACTTTCTATGGCCTGAGCCAGGCGCCCTGCCAGCTCTTCATTCTGTCCT
TCCATGGTGGCACTGCGGACCAGGGCTGCCCACCGCTGAGCTTCCTGCGGATCCGTGAAG
TGCAGGCCGAGGGTCCCAGGCCCTCCTGGTGGAGGCTGCAGCTCATGCTGGCTGGGGCCT
CGGACGGTGTAGTAAACTGACTCCAAGGGCCACTCCAAACCTACCGCCCCGTGTCCCGCG
CCCAGCAGCTCCAGCCGGAAGCGCCCCGGTCGCTCGGGGTCCGCGCTCAGCTGCAGCCTC
CGCAGCTGCGCCTCGGCGTCCGGCCCCGCGCCCAGCGGCCTCACCGCGGCGTGCACGGCC
AAGAGCACCGCCGGCGAGCCCGGGTCCGAGGAGGCGGCCGCGCCGCCCGCTGGAGGCGCC
ATCTCCGGTCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27529935|dbj|BAC53798.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27529935|dbj|BAC53798.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-148, - strand, RNAz p=0.955966
               

               
               689-808, + strand, RNAz p=0.64348

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-148, - strand, RNAz p=0.955966
               

               
               689-808, + strand, RNAz p=0.64348

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB052765, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB052765, -

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-265, gnl|bosTau2|chr14 (139227-138965)
               

               
               1-265, gnl|Hg17|chr8 (145225827-145226093)
               

               
               1-265, gnl|Mm7|chr15 (76429882-76430150)
               


               
               650-819, gnl|bosTau2|chr14 (136644-136475)
               

               
               650-819, gnl|Hg17|chr8 (145229942-145230111)
               

               
               650-819, gnl|Mm7|chr15 (76432608-76432777)
               


               
               823-1032, gnl|bosTau2|chr14 (136182-135973)
               

               
               823-1032, gnl|Hg17|chr8 (145230442-145230654)
               

               
               823-1032, gnl|Mm7|chr15 (76433032-76433241)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-265, gnl|bosTau2|chr14 (139227-138965)
               

               
               1-265, gnl|Hg17|chr8 (145225827-145226093)
               

               
               1-265, gnl|Mm7|chr15 (76429882-76430150)
               


               
               650-819, gnl|bosTau2|chr14 (136644-136475)
               

               
               650-819, gnl|Hg17|chr8 (145229942-145230111)
               

               
               650-819, gnl|Mm7|chr15 (76432608-76432777)
               


               
               823-1032, gnl|bosTau2|chr14 (136182-135973)
               

               
               823-1032, gnl|Hg17|chr8 (145230442-145230654)
               

               
               823-1032, gnl|Mm7|chr15 (76433032-76433241)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nlu (0.383362)
               

               
               cov (0.264306)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               ute (0.132784)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               cov (0.264306)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               ute (0.132784)

	40-148, - strand, RNAz p=0.955966
	689-808, + strand, RNAz p=0.64348

	1-265, gnl\|bosTau2\|chr14 (139227-138965)
	1-265, gnl\|Hg17\|chr8 (145225827-145226093)
	1-265, gnl\|Mm7\|chr15 (76429882-76430150)

	650-819, gnl\|bosTau2\|chr14 (136644-136475)
	650-819, gnl\|Hg17\|chr8 (145229942-145230111)
	650-819, gnl\|Mm7\|chr15 (76432608-76432777)

	823-1032, gnl\|bosTau2\|chr14 (136182-135973)
	823-1032, gnl\|Hg17\|chr8 (145230442-145230654)
	823-1032, gnl\|Mm7\|chr15 (76433032-76433241)

	nlu (0.383362)
	cov (0.264306)
	nep (0.183925)
	cag (0.151194)
	ute (0.132784)