Non-Coding RNA Search

Ss1.1-Liv1-LVR01H040085.5

Sequence:


               
               CCAGAGCTCCAGCCGCGCGGATCTCGCGCCCCCACCGCTCTGCCCCCAAACTTCAGCTGC
AGCTACATTCCAAGCCATCTAATTTATTCCTCAAAAATCAGAAACCGAGCCGCGACACGG
GGAAGGAGTCCGCGGAGGAGTAAAACTACAGCAGAGCAAGAAGGGCTCCAGAGAGCTGCC
TCCCCGGAGCAACAACTCGGCGTCGGGAGTGTAGGAACCAACAAGTGAGAAGGCGCCGCG
TTCCCCCAGCGCAGCCGCGGGCAGCGGGAGCAGGCGCAGGAAGAAGAAGCGAGCGCCCCG
GAGTCCCGAGCCCGAACCCCCGAGCCCCCGAGCCGGAGCCGCGGTCGCGGAGGCTGCTCC
GCTCCGGATTCTTCGGCGCGGGCTGCGCCGGGCGCTGAGCAAGAGGTTCCGCTTCTCTCT
GGTTGCAAGCGGCGGCTGGGAGCAGCCGATCCCCGGGGAATATGCGGCGCGTTTGGATCC
TGCTCACCTTGGGCTTGGTGGCCTGCGTGTCGGCGGAGTCGCGGGCAGAGCTGACGTCTG
ATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTG
ATGATGACGACTATGCTTCTGCTTCAGGCTCAGGGGCCGATGAGGACGTAGAGAGTCCAG
AGCTGACCACATCTCGACCCCTTCCAAAGATACCGATCACCAGTGCCGCTCCGAGAGTGG
AAACCACGACGCTGGACAAGATGCAGAACAAGATCCCTGCTCAGACAAAGTCACCTGAAG
AAATTGATAAGGAGAAAGTTCACCTCTCTGACTCAGAAAGGAAAACGGACCCAGCTGAAG
AGGATACAAATGTGTATACGGAGAAGCACTCAGACAATCTGTTTAAAAGAACAGAAGTCC
TGGCAGCTGTCATTGCTGGCGGAGTTATCGGCTTTCTCTTTGCCATTTTCCTTATTCTGC
TGTTGGTGTATCGCATGAGAAAGAAGGATGAAGGAAGTTATGACCTTGGAGAACGCAAAC
CATCCAGCGCTGCTTACCAGAAGGCACCGACTAAGGAGTTTTATGCGTGAAAACTCCCTC
TTAGTGTCTCTATTTATGAGATCACTGAACTTTTAAAAATAAAGCTTTTGCATAGAATAA
AAAAAAAAAAAATTTTTTGGTTTGTTTGTTTGTTTTTTTTTCATTCAAGTGCCAGCATGG
CACTTGAATGATAAAACCCCATTGTATTTAAAACTTTTCATGTATTTCTGTCGAACAACA
TAAAATCGAAACTTCACATCTGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTA
TACAGACCCTTAATGTTCATAGGATTGGTTTAAACTTTTACGTGCAAATATGAAAAGATT
GTCTTTATCCACTGGTTCAGAGATGAAAGCTGTTTCATTTGTGTCAGCATGTCTCAGATT
GACCTTACCAAGCTGGTCTGACTTTGTTAATTTATCTCTTGTTCCCTTCTCCTCTCCTCT
CTCCTCTTGTCCCCTTGAAAACAAAACAAAACTCTATGCCTTTTGTAGCTGTTACGGTGC
AAGTTGTCTTCGGATAATGCAGATAATGGTAATTTAGTGTATATGTGATTTTCAAACATG
TCAACTTTAACCTCCACTTTGTATACATTTTGAAGCGTCAGACTCGCCATTTTACATTTG
CTTTGTTTCTCCTTACCTATAGCTTCAGGCAGATTTGCAACAGCAAATTAATGTGTACAA
TCGGATAATCACCACAGAACTGTTGAGTCATATCTATCTAATCAGATCTTCTTTTGCGAG
GATTTGATGCGAGTTCCTGACAAGCCTCAGCAAACCCAAAGATGCTAACAGTATTTTGAG
AAGTTGCTGCAGATTCCTTTGGCCACTGTATTTGTTAATTTTTTTTGCAATTTGAAGGTA
CGAGTAGGGGTATAAGGAAAAATGAGTTTTTGTTCTTAAAAATGCATTTAAGTTGTAAAC
GTCTTTTTAAGCCTTTGAAGTGCCTATGATTCTATGTAACTTGTCGCAGACTGGTGTTAA
TGAGTATATATAACAGTTAAACAAAAAGTTGGTATTTTATAAGCACAGACAATTCTAATG
GTAACTTTTGTAGTCTTATGAATAGAAGTAAATTGTAATTTGGGAACATAAAAACTACTG
AATAAATCATGTGGCCTAATATGGAAAATGTCACTGTTATAAATTTTGTACATTTTCGAT
CCAATGTACATCTCCCCTTTGCTAACGACCGCAGATGCTCCGAAGGATGATGTGGGTTTG
ATTTCGGAGTGGTCCCCGGTGTCTGTAAATCAAAACCAAAGAGCTCATTGATGAGGCTTG
TTTATGACCAGATTTCGCTTCTGAATTGGCCAGAGGAAATCGGAATGTCTCGTCCTGGGT
GTGTTTGGATGTAGCTGTCGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAGCTCCAGCCGCGCGGATCTCGCGCCCCCACCGCTCTGCCCCCAAACTTCAGCTGC
AGCTACATTCCAAGCCATCTAATTTATTCCTCAAAAATCAGAAACCGAGCCGCGACACGG
GGAAGGAGTCCGCGGAGGAGTAAAACTACAGCAGAGCAAGAAGGGCTCCAGAGAGCTGCC
TCCCCGGAGCAACAACTCGGCGTCGGGAGTGTAGGAACCAACAAGTGAGAAGGCGCCGCG
TTCCCCCAGCGCAGCCGCGGGCAGCGGGAGCAGGCGCAGGAAGAAGAAGCGAGCGCCCCG
GAGTCCCGAGCCCGAACCCCCGAGCCCCCGAGCCGGAGCCGCGGTCGCGGAGGCTGCTCC
GCTCCGGATTCTTCGGCGCGGGCTGCGCCGGGCGCTGAGCAAGAGGTTCCGCTTCTCTCT
GGTTGCAAGCGGCGGCTGGGAGCAGCCGATCCCCGGGGAATATGCGGCGCGTTTGGATCC
TGCTCACCTTGGGCTTGGTGGCCTGCGTGTCGGCGGAGTCGCGGGCAGAGCTGACGTCTG
ATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTG
ATGATGACGACTATGCTTCTGCTTCAGGCTCAGGGGCCGATGAGGACGTAGAGAGTCCAG
AGCTGACCACATCTCGACCCCTTCCAAAGATACCGATCACCAGTGCCGCTCCGAGAGTGG
AAACCACGACGCTGGACAAGATGCAGAACAAGATCCCTGCTCAGACAAAGTCACCTGAAG
AAATTGATAAGGAGAAAGTTCACCTCTCTGACTCAGAAAGGAAAACGGACCCAGCTGAAG
AGGATACAAATGTGTATACGGAGAAGCACTCAGACAATCTGTTTAAAAGAACAGAAGTCC
TGGCAGCTGTCATTGCTGGCGGAGTTATCGGCTTTCTCTTTGCCATTTTCCTTATTCTGC
TGTTGGTGTATCGCATGAGAAAGAAGGATGAAGGAAGTTATGACCTTGGAGAACGCAAAC
CATCCAGCGCTGCTTACCAGAAGGCACCGACTAAGGAGTTTTATGCGTGAAAACTCCCTC
TTAGTGTCTCTATTTATGAGATCACTGAACTTTTAAAAATAAAGCTTTTGCATAGAATAA
AAAAAAAAAAAATTTTTTGGTTTGTTTGTTTGTTTTTTTTTCATTCAAGTGCCAGCATGG
CACTTGAATGATAAAACCCCATTGTATTTAAAACTTTTCATGTATTTCTGTCGAACAACA
TAAAATCGAAACTTCACATCTGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTA
TACAGACCCTTAATGTTCATAGGATTGGTTTAAACTTTTACGTGCAAATATGAAAAGATT
GTCTTTATCCACTGGTTCAGAGATGAAAGCTGTTTCATTTGTGTCAGCATGTCTCAGATT
GACCTTACCAAGCTGGTCTGACTTTGTTAATTTATCTCTTGTTCCCTTCTCCTCTCCTCT
CTCCTCTTGTCCCCTTGAAAACAAAACAAAACTCTATGCCTTTTGTAGCTGTTACGGTGC
AAGTTGTCTTCGGATAATGCAGATAATGGTAATTTAGTGTATATGTGATTTTCAAACATG
TCAACTTTAACCTCCACTTTGTATACATTTTGAAGCGTCAGACTCGCCATTTTACATTTG
CTTTGTTTCTCCTTACCTATAGCTTCAGGCAGATTTGCAACAGCAAATTAATGTGTACAA
TCGGATAATCACCACAGAACTGTTGAGTCATATCTATCTAATCAGATCTTCTTTTGCGAG
GATTTGATGCGAGTTCCTGACAAGCCTCAGCAAACCCAAAGATGCTAACAGTATTTTGAG
AAGTTGCTGCAGATTCCTTTGGCCACTGTATTTGTTAATTTTTTTTGCAATTTGAAGGTA
CGAGTAGGGGTATAAGGAAAAATGAGTTTTTGTTCTTAAAAATGCATTTAAGTTGTAAAC
GTCTTTTTAAGCCTTTGAAGTGCCTATGATTCTATGTAACTTGTCGCAGACTGGTGTTAA
TGAGTATATATAACAGTTAAACAAAAAGTTGGTATTTTATAAGCACAGACAATTCTAATG
GTAACTTTTGTAGTCTTATGAATAGAAGTAAATTGTAATTTGGGAACATAAAAACTACTG
AATAAATCATGTGGCCTAATATGGAAAATGTCACTGTTATAAATTTTGTACATTTTCGAT
CCAATGTACATCTCCCCTTTGCTAACGACCGCAGATGCTCCGAAGGATGATGTGGGTTTG
ATTTCGGAGTGGTCCCCGGTGTCTGTAAATCAAAACCAAAGAGCTCATTGATGAGGCTTG
TTTATGACCAGATTTCGCTTCTGAATTGGCCAGAGGAAATCGGAATGTCTCGTCCTGGGT
GTGTTTGGATGTAGCTGTCGGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PIS6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PIS6_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1023-1300, - strand, RNAz p=0.999988
               

               
               1657-1776, - strand, RNAz p=0.930025
               

               
               1897-2007, + strand, RNAz p=0.786433

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1023-1300, - strand, RNAz p=0.999988
               

               
               1657-1776, - strand, RNAz p=0.930025
               

               
               1897-2007, + strand, RNAz p=0.786433

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002998, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002998, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               4-521, gnl|bosTau2|chr14 (41946295-41945796)
               

               
               4-521, gnl|Hg17|chr8 (97575228-97575735)
               

               
               4-521, gnl|Mm7|chr15 (33029451-33029928)
               


               
               631-770, gnl|bosTau2|chr14 (41836529-41836390)
               

               
               631-770, gnl|Hg17|chr8 (97683796-97683932)
               

               
               631-770, gnl|Mm7|chr15 (33132269-33132408)
               


               
               904-2424, gnl|bosTau2|chr14 (41827463-41825965)
               

               
               904-2424, gnl|Hg17|chr8 (97690786-97692279)
               

               
               904-2424, gnl|Mm7|chr15 (33140997-33142489)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-521, gnl|bosTau2|chr14 (41946295-41945796)
               

               
               4-521, gnl|Hg17|chr8 (97575228-97575735)
               

               
               4-521, gnl|Mm7|chr15 (33029451-33029928)
               


               
               631-770, gnl|bosTau2|chr14 (41836529-41836390)
               

               
               631-770, gnl|Hg17|chr8 (97683796-97683932)
               

               
               631-770, gnl|Mm7|chr15 (33132269-33132408)
               


               
               904-2424, gnl|bosTau2|chr14 (41827463-41825965)
               

               
               904-2424, gnl|Hg17|chr8 (97690786-97692279)
               

               
               904-2424, gnl|Mm7|chr15 (33140997-33142489)

Expressed library(ies): 53 entry(ies)

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Expressed library(ies): 53 entry(ies)

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               lun (2.55831)
               

               
               ova (1.29132)
               

               
               ret (1.1586)
               

               
               ski (0.880411)
               

               
               cga (0.837287)
               

               
               gul (0.710353)
               

               
               pla (0.66836)
               

               
               pgl (0.592417)
               

               
               nlu (0.575043)
               

               
               nca (0.547495)
               

               
               cty (0.5204)
               

               
               pan (0.471921)
               

               
               jca (0.45584)
               

               
               nmm (0.398406)
               

               
               ute (0.398353)
               

               
               elu (0.385356)
               

               
               mgm (0.360685)
               

               
               mcp (0.341297)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 53 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (2.55831)
               

               
               ova (1.29132)
               

               
               ret (1.1586)
               

               
               ski (0.880411)
               

               
               cga (0.837287)
               

               
               gul (0.710353)
               

               
               pla (0.66836)
               

               
               pgl (0.592417)
               

               
               nlu (0.575043)
               

               
               nca (0.547495)
               

               
               cty (0.5204)
               

               
               pan (0.471921)
               

               
               jca (0.45584)
               

               
               nmm (0.398406)
               

               
               ute (0.398353)
               

               
               elu (0.385356)
               

               
               mgm (0.360685)
               

               
               mcp (0.341297)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	1023-1300, - strand, RNAz p=0.999988
	1657-1776, - strand, RNAz p=0.930025
	1897-2007, + strand, RNAz p=0.786433

	4-521, gnl\|bosTau2\|chr14 (41946295-41945796)
	4-521, gnl\|Hg17\|chr8 (97575228-97575735)
	4-521, gnl\|Mm7\|chr15 (33029451-33029928)

	631-770, gnl\|bosTau2\|chr14 (41836529-41836390)
	631-770, gnl\|Hg17\|chr8 (97683796-97683932)
	631-770, gnl\|Mm7\|chr15 (33132269-33132408)

	904-2424, gnl\|bosTau2\|chr14 (41827463-41825965)
	904-2424, gnl\|Hg17\|chr8 (97690786-97692279)
	904-2424, gnl\|Mm7\|chr15 (33140997-33142489)

	lun (2.55831)
	ova (1.29132)
	ret (1.1586)
	ski (0.880411)
	cga (0.837287)
	gul (0.710353)
	pla (0.66836)
	pgl (0.592417)
	nlu (0.575043)
	nca (0.547495)
	cty (0.5204)
	pan (0.471921)
	jca (0.45584)
	nmm (0.398406)
	ute (0.398353)
	elu (0.385356)
	mgm (0.360685)
	mcp (0.341297)
	vin (0.332557)
	nco (0.323468)
	cli (0.305623)
	ste (0.270416)
	lyg (0.266205)
	kid (0.259471)
	bla (0.248694)
	cbe (0.239234)
	mgp (0.230681)
	ece (0.229305)
	spc (0.226732)
	fli (0.202881)
	cmu (0.186393)
	sto (0.179824)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	cut (0.169924)
	cki (0.165235)
	cje (0.165235)
	tbr (0.154178)
	bfe (0.149858)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	csk (0.140746)
	cst (0.140036)
	hlv (0.139256)
	che (0.136314)
	sug (0.127291)
	tra (0.123092)
	eru (0.120048)
	jej (0.0989218)