Non-Coding RNA Search

Ss1.1-Liv1-LVR01H090085.5

Sequence:


               
               GCTTCTTCTTAAGTTCAGAAGCCAGCCTGACAGGCAGAGGAGCCAAAATGAAGACCCTCT
CCCCTACTGGTGCCTACGGCCTTCTGCTGGTCCTGCCCTTGCTGCTGGCTGTCCTTCAGA
GCACCACGGCCCACAAGAATGACATCAACATCTACAGTCTCACCGTGGACTCCAAGGTCT
CGTCCCGATTTGCCCACACAGTCGTTACCAGCCGAGTGGTCAACAAGGGCAGTGCTGTGC
AGGAGGCCACCTTCCAGATGGAGCTGCCCAAGAAGGCTTTCATCACCAACTTCTCCATGA
TCATCGATGGTGTGACCTACCCAGGTAACATCAAGGAGAAGGCTGCAGCCCAGGAGCAGT
ACAGCGCAGCCGTGGCCAGGGGAGAGAGTGCTGGCCTTGTCAGGGCCACTGGGAGAAAGA
CAGAGCAGTTCCAGGTGGCAGTCAGCGTGGCTCCTGCTGCCAAGGTCACCTTCGAGCTGG
TGTATGAGGAGCTTCTGGCACGGCATCTGGGAGTGTATGAGCTGCTGTTGAAAATCCAGC
CCCAGCAGCTGGTCAAGCACCTGCAGATGGACATTCACATCTTCGAGCCTCAGGGCATCA
GCTTTCTGGAGACAGAGAGCACCTTTATGACCAATGAACTGGCAGAGGCCCTCACCATAT
CACAGAACAAGACTAAGGCTCACATCCGATTCAAGCCGACACTCTCCCAGCAGCAGAAGT
CCCCAGAGCAGCAGGAAACAGTCCTGGATGGCAACTTCATCGTCCGCTATGATGTGAACC
GGACAGTCACTGGGGGTTCCATTCAGATCGAGAATGGCTACTTTGTGCATTACTTTGCCC
CGGAGGGTCTGTCTGCAATACCCAAGAACGTGATCTTTGTCATTGACACGAGCGGCTCCA
TGAGGGGCAGGAAAATCCAGCAGACCCGGGAAGCCCTAATTAAGATCCTGGGTGACCTCG
GCTCCCGCGACCAGTTCAACCTTGTCAGCTTCAGTGGGGAAGCCACCCAGTGGAAGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCTTCTTAAGTTCAGAAGCCAGCCTGACAGGCAGAGGAGCCAAAATGAAGACCCTCT
CCCCTACTGGTGCCTACGGCCTTCTGCTGGTCCTGCCCTTGCTGCTGGCTGTCCTTCAGA
GCACCACGGCCCACAAGAATGACATCAACATCTACAGTCTCACCGTGGACTCCAAGGTCT
CGTCCCGATTTGCCCACACAGTCGTTACCAGCCGAGTGGTCAACAAGGGCAGTGCTGTGC
AGGAGGCCACCTTCCAGATGGAGCTGCCCAAGAAGGCTTTCATCACCAACTTCTCCATGA
TCATCGATGGTGTGACCTACCCAGGTAACATCAAGGAGAAGGCTGCAGCCCAGGAGCAGT
ACAGCGCAGCCGTGGCCAGGGGAGAGAGTGCTGGCCTTGTCAGGGCCACTGGGAGAAAGA
CAGAGCAGTTCCAGGTGGCAGTCAGCGTGGCTCCTGCTGCCAAGGTCACCTTCGAGCTGG
TGTATGAGGAGCTTCTGGCACGGCATCTGGGAGTGTATGAGCTGCTGTTGAAAATCCAGC
CCCAGCAGCTGGTCAAGCACCTGCAGATGGACATTCACATCTTCGAGCCTCAGGGCATCA
GCTTTCTGGAGACAGAGAGCACCTTTATGACCAATGAACTGGCAGAGGCCCTCACCATAT
CACAGAACAAGACTAAGGCTCACATCCGATTCAAGCCGACACTCTCCCAGCAGCAGAAGT
CCCCAGAGCAGCAGGAAACAGTCCTGGATGGCAACTTCATCGTCCGCTATGATGTGAACC
GGACAGTCACTGGGGGTTCCATTCAGATCGAGAATGGCTACTTTGTGCATTACTTTGCCC
CGGAGGGTCTGTCTGCAATACCCAAGAACGTGATCTTTGTCATTGACACGAGCGGCTCCA
TGAGGGGCAGGAAAATCCAGCAGACCCGGGAAGCCCTAATTAAGATCCTGGGTGACCTCG
GCTCCCGCGACCAGTTCAACCTTGTCAGCTTCAGTGGGGAAGCCACCCAGTGGAAGAAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q68DH2_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q68DH2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               419-516, - strand, RNAz p=0.817544

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               419-516, - strand, RNAz p=0.817544

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               419-566, gnl|bosTau2|chr22 (42304563-42304710)
               

               
               419-566, gnl|canFam2|chrUn (43185482-43185305)
               

               
               419-566, gnl|danRer3|chrUn (126766961-126766777)
               

               
               419-566, gnl|dasNov1|scaffold_197870 (896-712)
               

               
               419-566, gnl|echTel1|scaffold_309652 (12972-12784)
               

               
               419-566, gnl|fr1|chrUn (134684113-134683945)
               

               
               419-566, gnl|hg17|chr3 (52835830-52836014)
               

               
               419-566, gnl|Hg17|chr3 (52835993-52835847)
               

               
               419-566, gnl|loxAfr1|scaffold_102 (26510-26326)
               

               
               419-566, gnl|mm7|chr14 (28319750-28319566)
               

               
               419-566, gnl|Mm7|chr14 (28319584-28319731)
               

               
               419-566, gnl|monDom2|scaffold_5 (69976704-69976501)
               

               
               419-566, gnl|oryCun1|scaffold_190587 (11047-10864)
               

               
               419-566, gnl|panTro1|chr2 (54479812-54479996)
               

               
               419-566, gnl|rheMac2|chr2 (83524815-83524631)
               

               
               419-566, gnl|rn3|chr16 (6323045-6322861)
               

               
               419-566, gnl|tetNig1|chr19 (540126-540294)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               419-566, gnl|bosTau2|chr22 (42304563-42304710)
               

               
               419-566, gnl|canFam2|chrUn (43185482-43185305)
               

               
               419-566, gnl|danRer3|chrUn (126766961-126766777)
               

               
               419-566, gnl|dasNov1|scaffold_197870 (896-712)
               

               
               419-566, gnl|echTel1|scaffold_309652 (12972-12784)
               

               
               419-566, gnl|fr1|chrUn (134684113-134683945)
               

               
               419-566, gnl|hg17|chr3 (52835830-52836014)
               

               
               419-566, gnl|Hg17|chr3 (52835993-52835847)
               

               
               419-566, gnl|loxAfr1|scaffold_102 (26510-26326)
               

               
               419-566, gnl|mm7|chr14 (28319750-28319566)
               

               
               419-566, gnl|Mm7|chr14 (28319584-28319731)
               

               
               419-566, gnl|monDom2|scaffold_5 (69976704-69976501)
               

               
               419-566, gnl|oryCun1|scaffold_190587 (11047-10864)
               

               
               419-566, gnl|panTro1|chr2 (54479812-54479996)
               

               
               419-566, gnl|rheMac2|chr2 (83524815-83524631)
               

               
               419-566, gnl|rn3|chr16 (6323045-6322861)
               

               
               419-566, gnl|tetNig1|chr19 (540126-540294)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nje (0.16592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	419-566, gnl\|bosTau2\|chr22 (42304563-42304710)
	419-566, gnl\|canFam2\|chrUn (43185482-43185305)
	419-566, gnl\|danRer3\|chrUn (126766961-126766777)
	419-566, gnl\|dasNov1\|scaffold_197870 (896-712)
	419-566, gnl\|echTel1\|scaffold_309652 (12972-12784)
	419-566, gnl\|fr1\|chrUn (134684113-134683945)
	419-566, gnl\|hg17\|chr3 (52835830-52836014)
	419-566, gnl\|Hg17\|chr3 (52835993-52835847)
	419-566, gnl\|loxAfr1\|scaffold_102 (26510-26326)
	419-566, gnl\|mm7\|chr14 (28319750-28319566)
	419-566, gnl\|Mm7\|chr14 (28319584-28319731)
	419-566, gnl\|monDom2\|scaffold_5 (69976704-69976501)
	419-566, gnl\|oryCun1\|scaffold_190587 (11047-10864)
	419-566, gnl\|panTro1\|chr2 (54479812-54479996)
	419-566, gnl\|rheMac2\|chr2 (83524815-83524631)
	419-566, gnl\|rn3\|chr16 (6323045-6322861)
	419-566, gnl\|tetNig1\|chr19 (540126-540294)