Ss1.1-Liv1-LVR01H100094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACCAGGCCCAGGTCTGGAGTTTCACTGGGACATTAAGCCAAGCAGACACGCAACAGAA GCCAGGATAGGCCATCCTGCCCCCAGCCCCAGCTTCTCTCTGTCTTCCACCACCATGGGG AGCAATCGCTGCCCCCGACTTGGGCTGGTACCCTTGATCCTGGGCCTCTTGTCTGGAGGT GTGAGCATGACGCCATTGCCTGAGGCCAGGCCCCAAAGCCCCTGCTCTCTGGAGGGGATT GAGATCAAAGGTGGCACCTTCCACCTTCTCAAGGAGGGCCTGGTTCTGGAGTACGTGTGT CCTTCTGGCTTCTACCCGTACCCGGTGCAGATTCGCACCTGCCGATCCTCGGGATCCTGG AGCACCCTGCAGACCCAAGACAGAAAGATTGTCAAGAGGGCCGAATGCAAAGCAATCCGC TGCCCCAGACCGCAGGACTTCGAGAATGGGGAGTATTGGCCCCGGGCCGCCTACTACAAC TTAAGTGACGAGATCTCCTTCCACTGCTATGACGGTTACACTCTCCGGGGCTCTGCCAAT CGCACCTGCCAAGTGACTGGTCGGTGGGATGGGCAAACGGCCATCTGCGATGATGGAGCG GGGTACTGCCCGAACCCAGGCATCCCCATTGGCACGAGGAAGGTGGGCACCCAGTACCGC CTTGAAGACAGTGTCACCTACTACTGCAGCCGAGGGCTCACCCTACGTGGCTCCCAGCGG CGAACGTGCCAGGAAGGTGGCTCTTGGAGTGGAACAGAGCCTTCCTGCCAAGACTCCTTT ATGTACGACACCCCTGCAGAGGTGGCCGAGGCCTTCCTGTCTTCCCTGACAGAGACCATA GAAGGCGTTGATGCCGAGGATGGGCACATCCCAGGGGACCAACAGAAGAGGAAGATTGTC TTGGACCCCTCGGGCTCCATGAATATCTACCTGGTGCTGGATGGATCAGACAGCATTGGG GCACGCAACTTCACAGGGGCCAAGAATTGCCTCAAAGACTTCATTGAAAAGGTGGCAAGC TATGGGGTGAAGCCGAAATATGGTCTAGTGACATATGCCACAGACCCCAAAGTTTTGATC AGAGTGTCCAACCCAAAGAGTGCTGATGCAGACTGGGTCACAGAACAGCTCGACAAAATC AGCTATGATGACCACAAGTTGAAGGCAGGGACTAACACCAAGAAGGCGCTCCTGGAAGTA TACAACATGATGAGCTGGGGAGTGAACAACTTTCCTGATAACTGGAACCGCACCCGCCAT GTCATTGTCCTCCTGACTGATGGCTTGCACAACATGGGCGGGGATCCGGTCACGGTCATT CATGATATTCGGGACCTGCTGAACATTGGTAGAAATCGCAAAAACCCAAGGGAGGATTAT CTGGACATCTACGTGTTTGGGGTTGGGCCTCTGGTGAACCAAGAGAACATCAATGCTTTG GCTTCCAAGAAGGACAAGGAACAACACGTGTTCAAACTCAAGGACGTAGATAACCTGGAG GATGTTTTCTTCCAAATGCTTGATGAAAGCCGGAGTCTGGGTCTCTGTGGCATGGTTTGG GAGCACAAGGACGGTACTGACTACCACAAGCAGCCGTGGCATGCCAAGATCTCAATCACT CGCCCTTCAAAGGGCCATGAGAGCTGTATGGGTGCCGTGGTGTCTGAGTACTTTGTGCTG ACAGCTGCACACTGTTTCACTGTGGATGACGAGAAACACTCCATCAAGGTCAGCCTGGGA GGGAAGAAGCAGGAGTGGGAGATAGACCAAGTCTTATTTCACCCAAACTATGACCTCAAC GCAAAGACCGCAAAAGATATTCCTGAATTTTATGACTATGACGTGGCCCTGATCAGGCTC TCGAAAAAGCTGAAGTATGACCAGACCATCAGGCCCATTTGTCTCCCCTGCACTGAGGGA TCAAATCAAGCTCTGAGGCTTCCTCTGACAACCACGTGCCAGCAACAGATGCAAGAGCTG CTGCCTGCAAAGGATGTCAAAGCCCTGTTTGTGTCAGAGCTGACCAAGGATCACAGGAAG ATACTGACTCGGAAGGAGGTTTACATCAAGAATGGGGAAAGGAAAGCTGCCTGTGAGAGA GATGCTCTACAAGCCCAAGGCTATGAAAAGGTCAAAGTCGTCTCTGAGGTGGTCACCCCC AGGTTCCTTTGCACTGGCGGGGTGATTCCCTATGCTGACCCCAACACTTGCAAAGGTGAC TCAGGGGGCCCCCTGATTATTCATAAGAAGAGCCGCTTTATTCAAGTTGGCGTGATCAGC TGGGGCGTCGTGGATATCTGCAAGCGGCAGCAGCAGGCACCCTCTTACGCCCGAGACTTT CACATCAACCTCTACAAAGTGCTGCCCTGGCTCAAGGAGAAACTCAAAGATGAGGATCTG GGTTTTCTCTAAGGGGTTTCCTGCTGGAAAGGGACATGAGATCAAATTAAAACAGCTGCG ACAACAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACCAGGCCCAGGTCTGGAGTTTCACTGGGACATTAAGCCAAGCAGACACGCAACAGAA GCCAGGATAGGCCATCCTGCCCCCAGCCCCAGCTTCTCTCTGTCTTCCACCACCATGGGG AGCAATCGCTGCCCCCGACTTGGGCTGGTACCCTTGATCCTGGGCCTCTTGTCTGGAGGT GTGAGCATGACGCCATTGCCTGAGGCCAGGCCCCAAAGCCCCTGCTCTCTGGAGGGGATT GAGATCAAAGGTGGCACCTTCCACCTTCTCAAGGAGGGCCTGGTTCTGGAGTACGTGTGT CCTTCTGGCTTCTACCCGTACCCGGTGCAGATTCGCACCTGCCGATCCTCGGGATCCTGG AGCACCCTGCAGACCCAAGACAGAAAGATTGTCAAGAGGGCCGAATGCAAAGCAATCCGC TGCCCCAGACCGCAGGACTTCGAGAATGGGGAGTATTGGCCCCGGGCCGCCTACTACAAC TTAAGTGACGAGATCTCCTTCCACTGCTATGACGGTTACACTCTCCGGGGCTCTGCCAAT CGCACCTGCCAAGTGACTGGTCGGTGGGATGGGCAAACGGCCATCTGCGATGATGGAGCG GGGTACTGCCCGAACCCAGGCATCCCCATTGGCACGAGGAAGGTGGGCACCCAGTACCGC CTTGAAGACAGTGTCACCTACTACTGCAGCCGAGGGCTCACCCTACGTGGCTCCCAGCGG CGAACGTGCCAGGAAGGTGGCTCTTGGAGTGGAACAGAGCCTTCCTGCCAAGACTCCTTT ATGTACGACACCCCTGCAGAGGTGGCCGAGGCCTTCCTGTCTTCCCTGACAGAGACCATA GAAGGCGTTGATGCCGAGGATGGGCACATCCCAGGGGACCAACAGAAGAGGAAGATTGTC TTGGACCCCTCGGGCTCCATGAATATCTACCTGGTGCTGGATGGATCAGACAGCATTGGG GCACGCAACTTCACAGGGGCCAAGAATTGCCTCAAAGACTTCATTGAAAAGGTGGCAAGC TATGGGGTGAAGCCGAAATATGGTCTAGTGACATATGCCACAGACCCCAAAGTTTTGATC AGAGTGTCCAACCCAAAGAGTGCTGATGCAGACTGGGTCACAGAACAGCTCGACAAAATC AGCTATGATGACCACAAGTTGAAGGCAGGGACTAACACCAAGAAGGCGCTCCTGGAAGTA TACAACATGATGAGCTGGGGAGTGAACAACTTTCCTGATAACTGGAACCGCACCCGCCAT GTCATTGTCCTCCTGACTGATGGCTTGCACAACATGGGCGGGGATCCGGTCACGGTCATT CATGATATTCGGGACCTGCTGAACATTGGTAGAAATCGCAAAAACCCAAGGGAGGATTAT CTGGACATCTACGTGTTTGGGGTTGGGCCTCTGGTGAACCAAGAGAACATCAATGCTTTG GCTTCCAAGAAGGACAAGGAACAACACGTGTTCAAACTCAAGGACGTAGATAACCTGGAG GATGTTTTCTTCCAAATGCTTGATGAAAGCCGGAGTCTGGGTCTCTGTGGCATGGTTTGG GAGCACAAGGACGGTACTGACTACCACAAGCAGCCGTGGCATGCCAAGATCTCAATCACT CGCCCTTCAAAGGGCCATGAGAGCTGTATGGGTGCCGTGGTGTCTGAGTACTTTGTGCTG ACAGCTGCACACTGTTTCACTGTGGATGACGAGAAACACTCCATCAAGGTCAGCCTGGGA GGGAAGAAGCAGGAGTGGGAGATAGACCAAGTCTTATTTCACCCAAACTATGACCTCAAC GCAAAGACCGCAAAAGATATTCCTGAATTTTATGACTATGACGTGGCCCTGATCAGGCTC TCGAAAAAGCTGAAGTATGACCAGACCATCAGGCCCATTTGTCTCCCCTGCACTGAGGGA TCAAATCAAGCTCTGAGGCTTCCTCTGACAACCACGTGCCAGCAACAGATGCAAGAGCTG CTGCCTGCAAAGGATGTCAAAGCCCTGTTTGTGTCAGAGCTGACCAAGGATCACAGGAAG ATACTGACTCGGAAGGAGGTTTACATCAAGAATGGGGAAAGGAAAGCTGCCTGTGAGAGA GATGCTCTACAAGCCCAAGGCTATGAAAAGGTCAAAGTCGTCTCTGAGGTGGTCACCCCC AGGTTCCTTTGCACTGGCGGGGTGATTCCCTATGCTGACCCCAACACTTGCAAAGGTGAC TCAGGGGGCCCCCTGATTATTCATAAGAAGAGCCGCTTTATTCAAGTTGGCGTGATCAGC TGGGGCGTCGTGGATATCTGCAAGCGGCAGCAGCAGGCACCCTCTTACGCCCGAGACTTT CACATCAACCTCTACAAAGTGCTGCCCTGGCTCAAGGAGAAACTCAAAGATGAGGATCTG GGTTTTCTCTAAGGGGTTTCCTGCTGGAAAGGGACATGAGATCAAATTAAAACAGCTGCG ACAACAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 205-324, + strand, RNAz p=0.525014 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 205-324, + strand, RNAz p=0.525014 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 166-412, gnl|bosTau2|chr23 (23539138-23539384) | |
| 166-412, gnl|canFam2|chr12 (4403217-4403456) | |
| 166-412, gnl|danRer3|chrNA (187902155-187902394) | |
| 166-412, gnl|fr1|chrUn (212884624-212884385) | |
| 166-412, gnl|hg17|chr6 (32022117-32022356) | |
| 166-412, gnl|Hg17|chr6 (32022116-32022362) | |
| 166-412, gnl|loxAfr1|scaffold_31686 (7480-7241) | |
| 166-412, gnl|mm7|chr17 (32958102-32957863) | |
| 166-412, gnl|Mm7|chr17 (32958101-32957855) | |
| 166-412, gnl|monDom2|scaffold_42 (17390598-17390368) | |
| 166-412, gnl|panTro1|chr5 (32424932-32425171) | |
| 166-412, gnl|rheMac2|chr4 (31602387-31602626) | |
| 166-412, gnl|rn3|chr20 (4072509-4072748) | |
| 594-772, gnl|bosTau2|chr23 (23540144-23540322) | |
| 594-772, gnl|Hg17|chr6 (32023099-32023277) | |
| 594-772, gnl|Mm7|chr17 (32957065-32956887) | |
| 1010-1170, gnl|bosTau2|chr23 (23541188-23541347) | |
| 1010-1170, gnl|Hg17|chr6 (32024128-32024287) | |
| 1010-1170, gnl|Mm7|chr17 (32956200-32956041) | |
| 1384-1530, gnl|bosTau2|chr23 (23542250-23542397) | |
| 1384-1530, gnl|Hg17|chr6 (32025175-32025322) | |
| 1384-1530, gnl|Mm7|chr17 (32955271-32955124) | |
| 1621-1739, gnl|bosTau2|chr23 (23543087-23543205) | |
| 1621-1739, gnl|Hg17|chr6 (32026042-32026160) | |
| 1621-1739, gnl|Mm7|chr17 (32954278-32954160) | |
| 2082-2219, gnl|bosTau2|chr23 (23544146-23544283) | |
| 2082-2219, gnl|Hg17|chr6 (32027096-32027233) | |
| 2082-2219, gnl|Mm7|chr17 (32953261-32953124) | |
| 2254-2466, gnl|bosTau2|chr23 (23544699-23544911) | |
| 2254-2466, gnl|Hg17|chr6 (32027620-32027840) | |
| 2254-2466, gnl|Mm7|chr17 (32952717-32952499) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 166-412, gnl|bosTau2|chr23 (23539138-23539384) | |
| 166-412, gnl|canFam2|chr12 (4403217-4403456) | |
| 166-412, gnl|danRer3|chrNA (187902155-187902394) | |
| 166-412, gnl|fr1|chrUn (212884624-212884385) | |
| 166-412, gnl|hg17|chr6 (32022117-32022356) | |
| 166-412, gnl|Hg17|chr6 (32022116-32022362) | |
| 166-412, gnl|loxAfr1|scaffold_31686 (7480-7241) | |
| 166-412, gnl|mm7|chr17 (32958102-32957863) | |
| 166-412, gnl|Mm7|chr17 (32958101-32957855) | |
| 166-412, gnl|monDom2|scaffold_42 (17390598-17390368) | |
| 166-412, gnl|panTro1|chr5 (32424932-32425171) | |
| 166-412, gnl|rheMac2|chr4 (31602387-31602626) | |
| 166-412, gnl|rn3|chr20 (4072509-4072748) | |
| 594-772, gnl|bosTau2|chr23 (23540144-23540322) | |
| 594-772, gnl|Hg17|chr6 (32023099-32023277) | |
| 594-772, gnl|Mm7|chr17 (32957065-32956887) | |
| 1010-1170, gnl|bosTau2|chr23 (23541188-23541347) | |
| 1010-1170, gnl|Hg17|chr6 (32024128-32024287) | |
| 1010-1170, gnl|Mm7|chr17 (32956200-32956041) | |
| 1384-1530, gnl|bosTau2|chr23 (23542250-23542397) | |
| 1384-1530, gnl|Hg17|chr6 (32025175-32025322) | |
| 1384-1530, gnl|Mm7|chr17 (32955271-32955124) | |
| 1621-1739, gnl|bosTau2|chr23 (23543087-23543205) | |
| 1621-1739, gnl|Hg17|chr6 (32026042-32026160) | |
| 1621-1739, gnl|Mm7|chr17 (32954278-32954160) | |
| 2082-2219, gnl|bosTau2|chr23 (23544146-23544283) | |
| 2082-2219, gnl|Hg17|chr6 (32027096-32027233) | |
| 2082-2219, gnl|Mm7|chr17 (32953261-32953124) | |
| 2254-2466, gnl|bosTau2|chr23 (23544699-23544911) | |
| 2254-2466, gnl|Hg17|chr6 (32027620-32027840) | |
| 2254-2466, gnl|Mm7|chr17 (32952717-32952499) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cli (3.20905) | |
| lun (1.05342) | |
| cje (0.495704) | |
| fli (0.405762) | |
| jej (0.197844) | |
| eje (0.197668) | |
| col (0.195008) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| hyp (0.142837) | |
| tra (0.123092) | |
| cly (0.120642) | |
| clu (0.119646) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (3.20905) | |
| lun (1.05342) | |
| cje (0.495704) | |
| fli (0.405762) | |
| jej (0.197844) | |
| eje (0.197668) | |
| col (0.195008) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| hyp (0.142837) | |
| tra (0.123092) | |
| cly (0.120642) | |
| clu (0.119646) |