Non-Coding RNA Search

Ss1.1-Liv1-LVRM10001C09.5

Sequence:


               
               AACTCTGACTCTAGAAATGTGGCTCTAAATGATCTGGAGTGCCCGTTGAGCTCCCCAGAT
GGCTCTGCTAGGTTGCCAGCATCACTTCTTGGCCAGACACAGTTGCCTTCTAGAATCCAG
TAGAACGTGATCAAAGTGTTAGTTGAAAGTTGGGCTTGCTCGCCGAATAAGAAGAGCGTC
ACAAACAAGATGCTTCGCTTCATGCCTGTTACTTGGTACTTTTTAGTCTTTGGTACTTTA
AAAAAAAAAAAAAAGACAAATTGTGGAATACAATTTTCTGATCTTGCGTAACGACAGAAT
TATGGAGAAGCATTGTAACGATGATCTGTCCCTGAAGTGCCACCATGCCAGTGGCCCCAG
GAAAACTCATCATGGGGCTTTGTTGTGGGGAAAGAGCTGAGCATGTTTAGGAAACAGAGT
AGAATTTGGCAGCAGTATTGAACAAGCAGAAATATTGACTGACCTCGTGGTCCACATGAA
TGTCAAGAAGTCGGTTTTAAAGATGCTGAGAACTCAGTCCCTTTTTATACACGCTTTGGC
TTTATCTTCCTAATCATTTGATTCAGTGCATGACTGATGAATCAGATTGATGATTGGATA
TCTTGAAAGATATTCATTGAAGTAGTCTATTCGTGTCTCACTTTAGCTTCACGTATTTAA
CAGAGTCCCAGAATTTTAAAGCCACAAGGGACCTTAGAGGTCACTGAAGTTAAACCTTCA
TTTTGTGGACAAGAAGCCTTGCTGTAACACAATTAAGAGACTCCACGTAGCCATACAGCT
ATTGCATGATGAAGCTAAAACCACAGCTTTAGTCTCTAGACCTCAGCGTTTGACTCTGTG
TGACATCTTGATGCACTAGGACCTTTTGGGTTCAATTTTTTAATTTTTTACTCTTGTGTG
GATTCATAATTAAAATCACATGGAGACCAGGACTCCTGTAAACTGAGGTAATTACAGTCC
ATACCAGGTAGGAAGAACTACGGCTTTTTGTATGGTGGGGTTTTTGCAGTTATGACACAT
GTTTGCACATTCTGTTTTGAACTTAGAAAAAATAGGTCGATTTTCTGTATAAGCAAGTAG
TGAAATGTGGGTTAAGCGGAGTCACTTTCGGAATCCTGTGATTGATTTGTGAAGGCGGTT
CGTTCAACTGCGTTTTCTTTTCACCTCTAATCATACAGCACTCTGATCACAAAACATAAA
TGAGCGAGGGTATTAACCGCCCCGGCATAGGCTATGAATCATCCGATGTAGAGCCCCAAA
GTGAAACATGCTCCAGTAGGTACATTGTGTTGCTTTTTCCTGAAGAAGTGATTTTTATCT
AAAGTGATTTGAAAAGCAGGGGTGTGTCCAGTTTCACAGGTGCCAAGACTTCCCTCTTTT
CGGGACCCTCGTAAAGTTTTTCTCAGGTTGGTTTTGAACCAGCCAGGCAACTCAGTTTCT
GCTTCTCAGCTGGTGTTTATGAAAATGGCAATCTTGGTGTGATTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCTGACTCTAGAAATGTGGCTCTAAATGATCTGGAGTGCCCGTTGAGCTCCCCAGAT
GGCTCTGCTAGGTTGCCAGCATCACTTCTTGGCCAGACACAGTTGCCTTCTAGAATCCAG
TAGAACGTGATCAAAGTGTTAGTTGAAAGTTGGGCTTGCTCGCCGAATAAGAAGAGCGTC
ACAAACAAGATGCTTCGCTTCATGCCTGTTACTTGGTACTTTTTAGTCTTTGGTACTTTA
AAAAAAAAAAAAAAGACAAATTGTGGAATACAATTTTCTGATCTTGCGTAACGACAGAAT
TATGGAGAAGCATTGTAACGATGATCTGTCCCTGAAGTGCCACCATGCCAGTGGCCCCAG
GAAAACTCATCATGGGGCTTTGTTGTGGGGAAAGAGCTGAGCATGTTTAGGAAACAGAGT
AGAATTTGGCAGCAGTATTGAACAAGCAGAAATATTGACTGACCTCGTGGTCCACATGAA
TGTCAAGAAGTCGGTTTTAAAGATGCTGAGAACTCAGTCCCTTTTTATACACGCTTTGGC
TTTATCTTCCTAATCATTTGATTCAGTGCATGACTGATGAATCAGATTGATGATTGGATA
TCTTGAAAGATATTCATTGAAGTAGTCTATTCGTGTCTCACTTTAGCTTCACGTATTTAA
CAGAGTCCCAGAATTTTAAAGCCACAAGGGACCTTAGAGGTCACTGAAGTTAAACCTTCA
TTTTGTGGACAAGAAGCCTTGCTGTAACACAATTAAGAGACTCCACGTAGCCATACAGCT
ATTGCATGATGAAGCTAAAACCACAGCTTTAGTCTCTAGACCTCAGCGTTTGACTCTGTG
TGACATCTTGATGCACTAGGACCTTTTGGGTTCAATTTTTTAATTTTTTACTCTTGTGTG
GATTCATAATTAAAATCACATGGAGACCAGGACTCCTGTAAACTGAGGTAATTACAGTCC
ATACCAGGTAGGAAGAACTACGGCTTTTTGTATGGTGGGGTTTTTGCAGTTATGACACAT
GTTTGCACATTCTGTTTTGAACTTAGAAAAAATAGGTCGATTTTCTGTATAAGCAAGTAG
TGAAATGTGGGTTAAGCGGAGTCACTTTCGGAATCCTGTGATTGATTTGTGAAGGCGGTT
CGTTCAACTGCGTTTTCTTTTCACCTCTAATCATACAGCACTCTGATCACAAAACATAAA
TGAGCGAGGGTATTAACCGCCCCGGCATAGGCTATGAATCATCCGATGTAGAGCCCCAAA
GTGAAACATGCTCCAGTAGGTACATTGTGTTGCTTTTTCCTGAAGAAGTGATTTTTATCT
AAAGTGATTTGAAAAGCAGGGGTGTGTCCAGTTTCACAGGTGCCAAGACTTCCCTCTTTT
CGGGACCCTCGTAAAGTTTTTCTCAGGTTGGTTTTGAACCAGCCAGGCAACTCAGTTTCT
GCTTCTCAGCTGGTGTTTATGAAAATGGCAATCTTGGTGTGATTAATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               5-123, - strand, RNAz p=0.995296
               

               
               524-640, + strand, RNAz p=0.592393

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-123, - strand, RNAz p=0.995296
               

               
               524-640, + strand, RNAz p=0.592393

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-1488, gnl|bosTau2|chr12 (44380490-44378967)
               

               
               5-1488, gnl|Hg17|chr13 (97847921-97849411)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1488, gnl|bosTau2|chr12 (44380490-44378967)
               

               
               5-1488, gnl|Hg17|chr13 (97847921-97849411)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	5-123, - strand, RNAz p=0.995296
	524-640, + strand, RNAz p=0.592393

	5-1488, gnl\|bosTau2\|chr12 (44380490-44378967)
	5-1488, gnl\|Hg17\|chr13 (97847921-97849411)