Non-Coding RNA Search

Ss1.1-Liv1-LVRM10006G12.5

Sequence:


               
               TTTCGTTTTTAGAGTGGACATACTACTGTACATTTAAAAGTAGTTACTTATTTTGCTATT
CAAATTAATTTTTTATTATATCTCAAAGTGAAATTATCCGTTTCACTTTTCCAAGCTTTG
TAGAACAAACTTGAAGTTACAGGGAGGTAAGCCATCTCCAATTCTGCAGGTCAAACAAAC
GTTTGGGAAATATTTTAAACATCTCATAATGCGGAGTGTCTTAACATGAGTTTCACGTTG
TCTGGTTCTGTTTAATAGTAGATGCCATAAACCTCATGTCTCTCTCTTAAAAACAGTGGA
AGGTAACAAGTGGAATTCGGTTGACTTCTAAACAGTGATCTGCTGTCATTTTAACAGGTT
TCTTTTCCTTTTCATCTTTGAGATTCTCACCTCCTTTTACAAAAGAATCATGAGTCACTT
CAGATTACACCATAATGAGGAATGTTCATCGGTCTTAAAATCGCATTTGCTCCCTTCAGC
AAGGGCTCACTAGGCGGTCAGGCTGAGTGTTTTGAGATACGGAAAATAAGGTCTGTGAGT
GATGGGAAGATGGTATGGAAACTGGGGATTTCGTTCTAGTTTCTGATTTGCGTTTCAAGT
GTCTTTAGTCCAGGGTAAGGGACTGGGCAGCTGCCATGGCCCCAGGTCGCTATCAGTTAG
TCTCCAGACAAGGTCAGGGAGGAGAGTGGGGAGGAGGGGTTTCAGGGCCGGCCTCCCAGC
TCAGGAAGAGTCTGAGGCCTGGGGGGCGGGGAGCGTTGTCGGGAGCCACGGCCTGCCCAC
CCCCCACCCACACCCCAACCCTTTGCACCATTTACCAGTTGCAGGAAGGTTTCCGTCTGC
CCAGGCAAGGACAAAGCATATTTGACTTGGAGGTGCTTCTGCTGGTTGCAGGGGTTCTTA
CTGTGAAAAGCCGTGTGAGGGGGGCTGGGTGGGAGGAGGCGGATGGTGATTGTGCGGGAA
GATCTTGTACTAAAAATACATGAGCTTAGGGGCACAGGGTGGGATGTGCAAGCAAAATCT
GCGGTTATTTTAAAATGAACATGTATTTTTATTAACTTTGAGTTAAATATAGATTATTAC
AACCAGGTCAACATGATAAGCCTAAATCTATATAGAGAGCTAACTCAGGCATTGTCTTGT
GCATCTGTACACAGAATGAGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCGTTTTTAGAGTGGACATACTACTGTACATTTAAAAGTAGTTACTTATTTTGCTATT
CAAATTAATTTTTTATTATATCTCAAAGTGAAATTATCCGTTTCACTTTTCCAAGCTTTG
TAGAACAAACTTGAAGTTACAGGGAGGTAAGCCATCTCCAATTCTGCAGGTCAAACAAAC
GTTTGGGAAATATTTTAAACATCTCATAATGCGGAGTGTCTTAACATGAGTTTCACGTTG
TCTGGTTCTGTTTAATAGTAGATGCCATAAACCTCATGTCTCTCTCTTAAAAACAGTGGA
AGGTAACAAGTGGAATTCGGTTGACTTCTAAACAGTGATCTGCTGTCATTTTAACAGGTT
TCTTTTCCTTTTCATCTTTGAGATTCTCACCTCCTTTTACAAAAGAATCATGAGTCACTT
CAGATTACACCATAATGAGGAATGTTCATCGGTCTTAAAATCGCATTTGCTCCCTTCAGC
AAGGGCTCACTAGGCGGTCAGGCTGAGTGTTTTGAGATACGGAAAATAAGGTCTGTGAGT
GATGGGAAGATGGTATGGAAACTGGGGATTTCGTTCTAGTTTCTGATTTGCGTTTCAAGT
GTCTTTAGTCCAGGGTAAGGGACTGGGCAGCTGCCATGGCCCCAGGTCGCTATCAGTTAG
TCTCCAGACAAGGTCAGGGAGGAGAGTGGGGAGGAGGGGTTTCAGGGCCGGCCTCCCAGC
TCAGGAAGAGTCTGAGGCCTGGGGGGCGGGGAGCGTTGTCGGGAGCCACGGCCTGCCCAC
CCCCCACCCACACCCCAACCCTTTGCACCATTTACCAGTTGCAGGAAGGTTTCCGTCTGC
CCAGGCAAGGACAAAGCATATTTGACTTGGAGGTGCTTCTGCTGGTTGCAGGGGTTCTTA
CTGTGAAAAGCCGTGTGAGGGGGGCTGGGTGGGAGGAGGCGGATGGTGATTGTGCGGGAA
GATCTTGTACTAAAAATACATGAGCTTAGGGGCACAGGGTGGGATGTGCAAGCAAAATCT
GCGGTTATTTTAAAATGAACATGTATTTTTATTAACTTTGAGTTAAATATAGATTATTAC
AACCAGGTCAACATGATAAGCCTAAATCTATATAGAGAGCTAACTCAGGCATTGTCTTGT
GCATCTGTACACAGAATGAGACAG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-753, gnl|bosTau2|chr25 (33132785-33133547)
               

               
               1-753, gnl|Hg17|chr7 (99282262-99283002)
               


               
               845-1157, gnl|bosTau2|chr25 (33133614-33133908)
               

               
               845-1157, gnl|Hg17|chr7 (99283106-99283414)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-753, gnl|bosTau2|chr25 (33132785-33133547)
               

               
               1-753, gnl|Hg17|chr7 (99282262-99283002)
               


               
               845-1157, gnl|bosTau2|chr25 (33133614-33133908)
               

               
               845-1157, gnl|Hg17|chr7 (99283106-99283414)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cty (0.10408)

	1-753, gnl\|bosTau2\|chr25 (33132785-33133547)
	1-753, gnl\|Hg17\|chr7 (99282262-99283002)

	845-1157, gnl\|bosTau2\|chr25 (33133614-33133908)
	845-1157, gnl\|Hg17\|chr7 (99283106-99283414)