Ss1.1-Liv1-LVRM10007F05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGCAGGATTTGTCGGTGCTACCGTCTTTCTTCTGGGTTTCAATAAAGTTTTCCTTTTG CTCCCCTTGTACGGAGCTCAAGATGGCGGCCTCCTGGTCGCCCTTGGTTACCCTCCGCTT AGCGCAGAGCCGGTTGGGAGGGAGATGTGTTGGGTGCAGGGCCTGGGCCGCTGCTCTCGC CCCTCCGGCCACCGCCCCTGGAAACTCTCTCTGTAAAGCCTATACAGTTCAGACCTCCGA GAGTATATCTCCAGCTGCTGCTACAGAGGCTTATTCAAAAGCTTTGGCTGTTTGCCATGG ACCACTGGACCACTATGACTTTCTGATCAAAGCTCGTGAGCTAAAGGATGATGAACATCA AAGAAGAGTCATACGGTGTTTGCAGAAATTACATGAGGACCTTAAAGGATACAGTATAGA GGCAGAGGGCCTTTTTTCAAAGCTTTTTTCAAGGAGCAAACCTCCAAGGGGCCTGTATGT TTATGGAGATGTTGGTACAGGGAAAACAATGGTGATGGACATGTTTTATGCTTATGTGGA AATGGAGAAGAAAAAACGGGTTCACTTTCATGGTTTCATGCTAGATGTTCACAAAAGAAT ACACCGCCTTAAACAGAGTTTGCCGAAAAGGAAACCAGGATTCATGGCTAAATCATATGA TCCGATAGCTCCCATAGCTGAAGAAATCAGTGAAGAAGCATGTCTCTTATGTTTTGATGA ATTTCAGGTCACTGACATCGCTGATGCCATGATTCTGAAACAGCTTTTTGAAAATCTGTT CAAAAACGGGGTCGTCGTTGTGGCAACATCCAACAGGCCACCGGAAGATCTCTATAAAAA TGGACTCCAAAGAGCTAACTTTGTACCGTTCATAGCTGTACTTAAGGAATACTGTAATAC TGTCCAGCTAGACTCTGGGATAGATTATCGGAAAAGGGAACTTCCTGCTGCAGGAAAACT CTACTACCTCACAAGTGAAGCTGATGTGGAGGCTGTCATGGATAAGTTGTTTGATGAGCT GGCTCAGAAACAAAATGATTTAACTAGACCAAGGATTCTAAAAGTGCAAGGCAGAGAGCT GCGACTGAATAAAGCCTGTGGAACCATTGCCGACTGCACATTTGAAGAGCTATGTGAGAG ACCACTTGGCGCCAGTGACTATTTGGAATTGTCAAAGAATTTTGATACAGTATTTTTACG AAACATTCCACAATTTACCCTGGCAAAGAGGACCCATGCTCGGAGATTCATAACTCTCAT TGATAACTTTTATGATTTGAAGGTGCGTATAATTTGCTCTGCATCAGCTCCCATAGCGAG CTTATTTTTGTATGAACATCATGACAGTGAGTTGGAGCAAAGCAGAATACTGATGGATGA TTTGGGGCTGAGCCAGGACTCAGCGGAAGGACTCGCCATGTTTACTGGAGAAGAAGAAGT CTTTGCATTTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGCAGGATTTGTCGGTGCTACCGTCTTTCTTCTGGGTTTCAATAAAGTTTTCCTTTTG CTCCCCTTGTACGGAGCTCAAGATGGCGGCCTCCTGGTCGCCCTTGGTTACCCTCCGCTT AGCGCAGAGCCGGTTGGGAGGGAGATGTGTTGGGTGCAGGGCCTGGGCCGCTGCTCTCGC CCCTCCGGCCACCGCCCCTGGAAACTCTCTCTGTAAAGCCTATACAGTTCAGACCTCCGA GAGTATATCTCCAGCTGCTGCTACAGAGGCTTATTCAAAAGCTTTGGCTGTTTGCCATGG ACCACTGGACCACTATGACTTTCTGATCAAAGCTCGTGAGCTAAAGGATGATGAACATCA AAGAAGAGTCATACGGTGTTTGCAGAAATTACATGAGGACCTTAAAGGATACAGTATAGA GGCAGAGGGCCTTTTTTCAAAGCTTTTTTCAAGGAGCAAACCTCCAAGGGGCCTGTATGT TTATGGAGATGTTGGTACAGGGAAAACAATGGTGATGGACATGTTTTATGCTTATGTGGA AATGGAGAAGAAAAAACGGGTTCACTTTCATGGTTTCATGCTAGATGTTCACAAAAGAAT ACACCGCCTTAAACAGAGTTTGCCGAAAAGGAAACCAGGATTCATGGCTAAATCATATGA TCCGATAGCTCCCATAGCTGAAGAAATCAGTGAAGAAGCATGTCTCTTATGTTTTGATGA ATTTCAGGTCACTGACATCGCTGATGCCATGATTCTGAAACAGCTTTTTGAAAATCTGTT CAAAAACGGGGTCGTCGTTGTGGCAACATCCAACAGGCCACCGGAAGATCTCTATAAAAA TGGACTCCAAAGAGCTAACTTTGTACCGTTCATAGCTGTACTTAAGGAATACTGTAATAC TGTCCAGCTAGACTCTGGGATAGATTATCGGAAAAGGGAACTTCCTGCTGCAGGAAAACT CTACTACCTCACAAGTGAAGCTGATGTGGAGGCTGTCATGGATAAGTTGTTTGATGAGCT GGCTCAGAAACAAAATGATTTAACTAGACCAAGGATTCTAAAAGTGCAAGGCAGAGAGCT GCGACTGAATAAAGCCTGTGGAACCATTGCCGACTGCACATTTGAAGAGCTATGTGAGAG ACCACTTGGCGCCAGTGACTATTTGGAATTGTCAAAGAATTTTGATACAGTATTTTTACG AAACATTCCACAATTTACCCTGGCAAAGAGGACCCATGCTCGGAGATTCATAACTCTCAT TGATAACTTTTATGATTTGAAGGTGCGTATAATTTGCTCTGCATCAGCTCCCATAGCGAG CTTATTTTTGTATGAACATCATGACAGTGAGTTGGAGCAAAGCAGAATACTGATGGATGA TTTGGGGCTGAGCCAGGACTCAGCGGAAGGACTCGCCATGTTTACTGGAGAAGAAGAAGT CTTTGCATTTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 594-712, - strand, RNAz p=0.57711 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 594-712, - strand, RNAz p=0.57711 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 214-442, gnl|bosTau2|chr11 (84735562-84735334) | |
| 214-442, gnl|Hg17|chr6 (108751717-108751945) | |
| 214-442, gnl|Mm7|chr10 (42265196-42264968) | |
| 594-729, gnl|bosTau2|chr11 (81600869-81600734) | |
| 594-729, gnl|canFam2|chr12 (68417885-68418042) | |
| 594-729, gnl|danRer3|chr20 (28819356-28819196) | |
| 594-729, gnl|dasNov1|scaffold_55253 (8806-8649) | |
| 594-729, gnl|echTel1|scaffold_293425 (2967-3124) | |
| 594-729, gnl|fr1|chrUn (2526745-2526608) | |
| 594-729, gnl|galGal2|chr3 (65841580-65841444) | |
| 594-729, gnl|hg17|chr6 (108784586-108784743) | |
| 594-729, gnl|Hg17|chr6 (108784584-108784719) | |
| 594-729, gnl|loxAfr1|scaffold_130943 (4934-5091) | |
| 594-729, gnl|mm7|chr10 (42235972-42235822) | |
| 594-729, gnl|Mm7|chr10 (42235972-42235837) | |
| 594-729, gnl|monDom2|scaffold_0 (112188477-112188321) | |
| 594-729, gnl|panTro1|chr5_random (2959219-2959377) | |
| 594-729, gnl|rheMac2|chr4 (155523622-155523465) | |
| 594-729, gnl|tetNig1|chr14 (3437573-3437435) | |
| 594-729, gnl|xenTro1|scaffold_975 (141715-141563) | |
| 1041-1141, gnl|bosTau2|chr11 (81334491-81334591) | |
| 1041-1141, gnl|Hg17|chr6 (108905088-108905188) | |
| 1041-1141, gnl|Mm7|chr10 (42150586-42150486) | |
| 1142-1284, gnl|bosTau2|chr11 (81375350-81375492) | |
| 1142-1284, gnl|canFam2|chr12 (68540905-68541055) | |
| 1142-1284, gnl|danRer3|chr20 (28724660-28724510) | |
| 1142-1284, gnl|dasNov1|scaffold_24279 (81887-82037) | |
| 1142-1284, gnl|echTel1|scaffold_312052 (2259-2409) | |
| 1142-1284, gnl|fr1|chrUn (2525600-2525450) | |
| 1142-1284, gnl|galGal2|chr3 (65803641-65803491) | |
| 1142-1284, gnl|hg17|chr6 (108938103-108938253) | |
| 1142-1284, gnl|Hg17|chr6 (108938108-108938250) | |
| 1142-1284, gnl|loxAfr1|scaffold_44 (167028-166878) | |
| 1142-1284, gnl|mm7|chr10 (42129400-42129250) | |
| 1142-1284, gnl|Mm7|chr10 (42129393-42129251) | |
| 1142-1284, gnl|monDom2|scaffold_0 (112065008-112064858) | |
| 1142-1284, gnl|oryCun1|scaffold_187163 (274-424) | |
| 1142-1284, gnl|panTro1|chr5 (111245339-111245489) | |
| 1142-1284, gnl|rheMac2|chr4 (155383393-155383257) | |
| 1142-1284, gnl|rn3|chr20 (46325540-46325390) | |
| 1142-1284, gnl|tetNig1|chr14 (3426329-3426181) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 214-442, gnl|bosTau2|chr11 (84735562-84735334) | |
| 214-442, gnl|Hg17|chr6 (108751717-108751945) | |
| 214-442, gnl|Mm7|chr10 (42265196-42264968) | |
| 594-729, gnl|bosTau2|chr11 (81600869-81600734) | |
| 594-729, gnl|canFam2|chr12 (68417885-68418042) | |
| 594-729, gnl|danRer3|chr20 (28819356-28819196) | |
| 594-729, gnl|dasNov1|scaffold_55253 (8806-8649) | |
| 594-729, gnl|echTel1|scaffold_293425 (2967-3124) | |
| 594-729, gnl|fr1|chrUn (2526745-2526608) | |
| 594-729, gnl|galGal2|chr3 (65841580-65841444) | |
| 594-729, gnl|hg17|chr6 (108784586-108784743) | |
| 594-729, gnl|Hg17|chr6 (108784584-108784719) | |
| 594-729, gnl|loxAfr1|scaffold_130943 (4934-5091) | |
| 594-729, gnl|mm7|chr10 (42235972-42235822) | |
| 594-729, gnl|Mm7|chr10 (42235972-42235837) | |
| 594-729, gnl|monDom2|scaffold_0 (112188477-112188321) | |
| 594-729, gnl|panTro1|chr5_random (2959219-2959377) | |
| 594-729, gnl|rheMac2|chr4 (155523622-155523465) | |
| 594-729, gnl|tetNig1|chr14 (3437573-3437435) | |
| 594-729, gnl|xenTro1|scaffold_975 (141715-141563) | |
| 1041-1141, gnl|bosTau2|chr11 (81334491-81334591) | |
| 1041-1141, gnl|Hg17|chr6 (108905088-108905188) | |
| 1041-1141, gnl|Mm7|chr10 (42150586-42150486) | |
| 1142-1284, gnl|bosTau2|chr11 (81375350-81375492) | |
| 1142-1284, gnl|canFam2|chr12 (68540905-68541055) | |
| 1142-1284, gnl|danRer3|chr20 (28724660-28724510) | |
| 1142-1284, gnl|dasNov1|scaffold_24279 (81887-82037) | |
| 1142-1284, gnl|echTel1|scaffold_312052 (2259-2409) | |
| 1142-1284, gnl|fr1|chrUn (2525600-2525450) | |
| 1142-1284, gnl|galGal2|chr3 (65803641-65803491) | |
| 1142-1284, gnl|hg17|chr6 (108938103-108938253) | |
| 1142-1284, gnl|Hg17|chr6 (108938108-108938250) | |
| 1142-1284, gnl|loxAfr1|scaffold_44 (167028-166878) | |
| 1142-1284, gnl|mm7|chr10 (42129400-42129250) | |
| 1142-1284, gnl|Mm7|chr10 (42129393-42129251) | |
| 1142-1284, gnl|monDom2|scaffold_0 (112065008-112064858) | |
| 1142-1284, gnl|oryCun1|scaffold_187163 (274-424) | |
| 1142-1284, gnl|panTro1|chr5 (111245339-111245489) | |
| 1142-1284, gnl|rheMac2|chr4 (155383393-155383257) | |
| 1142-1284, gnl|rn3|chr20 (46325540-46325390) | |
| 1142-1284, gnl|tetNig1|chr14 (3426329-3426181) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| lun (0.300978) | |
| tes (0.207814) |