Ss1.1-Liv1-LVRM10008F04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGTGTGTGTGTATTTGTGTATCGGCGGTCCCGCAGGTCCCGGATGTTGCGGACAGTAT GAGGCGAGCGCAGGGGGACGGGGACCAGCAGCTGTCGCCGCCGCTCTCAGGGTGAAGAGA GAACAGAAGTCTTTGTCCCCTGACCTTGGAGATCTTGTTTAACCTTCAAACTGGCGATGT CAAGGGTTCCAAGTCCTCCACCTCCGGCAGAAATGTCGAGTGGCCCTGTAGCTGAGAGCT GGTGCTACACACAGATCAAGGTAGTGAAATTCTCCTACATGTGGACCATCAATAACTTTA GCTTTTGCCGGGAGGAAATGGGTGAAGTCATTAAAAGTTCAACCTTTTCATCAGGAGCCA ATGATAAACTGAAATGGTGTTTGCGGGTAAACCCAAAAGGGCTAGATGAAGAAAGCAAAG ATTACCTGTCACTTTACCTGTTATTGGTCAGCTGTCCAAAGAGTGAAGTTCGAGCAAAAT TCAAATTCTCCATCCTGAATGCCAAGGGAGAAGAAACCAAAGCTATGGAGAGTCAACGGG CATATAGGTTTGTGCAAGGCAAAGACTGGGGATTCAAAAAATTCATCCGTAGAGATTTTC TCTTGGATGAGGCCAACGGGCTTCTCCCTGATGACAAGCTTACCCTCTTCTGTGAGGTGA GTGTGGTGCAAGATTCCGTCAACATTTCTGGCCAGAATACCATGAATATGGTGAAGGTTC CCGAGTGCCGGTTGGCAGATGAGTTAGGAGGACTGTGGGAGAATTCCCGGTTCACAGACT GTTGTTTGTGCGTTGCTGGCCAGGAATTCCAGGCTCACAAAGCTATCTTAGCAGCTCGTT CTCCAGTTTTTAGTGCCATGTTTGAACATGAAATGGAGGAGAGCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGTGTGTGTGTATTTGTGTATCGGCGGTCCCGCAGGTCCCGGATGTTGCGGACAGTAT GAGGCGAGCGCAGGGGGACGGGGACCAGCAGCTGTCGCCGCCGCTCTCAGGGTGAAGAGA GAACAGAAGTCTTTGTCCCCTGACCTTGGAGATCTTGTTTAACCTTCAAACTGGCGATGT CAAGGGTTCCAAGTCCTCCACCTCCGGCAGAAATGTCGAGTGGCCCTGTAGCTGAGAGCT GGTGCTACACACAGATCAAGGTAGTGAAATTCTCCTACATGTGGACCATCAATAACTTTA GCTTTTGCCGGGAGGAAATGGGTGAAGTCATTAAAAGTTCAACCTTTTCATCAGGAGCCA ATGATAAACTGAAATGGTGTTTGCGGGTAAACCCAAAAGGGCTAGATGAAGAAAGCAAAG ATTACCTGTCACTTTACCTGTTATTGGTCAGCTGTCCAAAGAGTGAAGTTCGAGCAAAAT TCAAATTCTCCATCCTGAATGCCAAGGGAGAAGAAACCAAAGCTATGGAGAGTCAACGGG CATATAGGTTTGTGCAAGGCAAAGACTGGGGATTCAAAAAATTCATCCGTAGAGATTTTC TCTTGGATGAGGCCAACGGGCTTCTCCCTGATGACAAGCTTACCCTCTTCTGTGAGGTGA GTGTGGTGCAAGATTCCGTCAACATTTCTGGCCAGAATACCATGAATATGGTGAAGGTTC CCGAGTGCCGGTTGGCAGATGAGTTAGGAGGACTGTGGGAGAATTCCCGGTTCACAGACT GTTGTTTGTGCGTTGCTGGCCAGGAATTCCAGGCTCACAAAGCTATCTTAGCAGCTCGTT CTCCAGTTTTTAGTGCCATGTTTGAACATGAAATGGAGGAGAGCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 694-813, + strand, RNAz p=0.994724 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 694-813, + strand, RNAz p=0.994724 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 108-254, gnl|bosTau2|chr19 (29765326-29765472) | |
| 108-254, gnl|Hg17|chr17 (45055240-45055094) | |
| 108-254, gnl|Mm7|chr11 (95579558-95579704) | |
| 376-528, gnl|bosTau2|chr19 (29768124-29768276) | |
| 376-528, gnl|canFam2|chr9 (29027784-29027970) | |
| 376-528, gnl|danRer3|chr9 (12713492-12713294) | |
| 376-528, gnl|dasNov1|scaffold_115749 (6378-6564) | |
| 376-528, gnl|echTel1|scaffold_323582 (7947-8144) | |
| 376-528, gnl|fr1|chrUn (38912086-38911903) | |
| 376-528, gnl|galGal2|chrUn (84966684-84966854) | |
| 376-528, gnl|hg17|chr17 (45051583-45051769) | |
| 376-528, gnl|Hg17|chr17 (45051747-45051595) | |
| 376-528, gnl|loxAfr1|scaffold_14391 (52173-52360) | |
| 376-528, gnl|mm7|chr11 (95583435-95583256) | |
| 376-528, gnl|Mm7|chr11 (95583269-95583421) | |
| 376-528, gnl|monDom2|scaffold_18 (44095937-44095750) | |
| 376-528, gnl|oryCun1|scaffold_200549 (22850-23042) | |
| 376-528, gnl|panTro1|chr19_random (30657337-30657526) | |
| 376-528, gnl|rheMac2|chr16 (33850130-33850316) | |
| 376-528, gnl|rn3|chr10 (84181698-84181519) | |
| 376-528, gnl|tetNig1|chr2 (5591617-5591433) | |
| 376-528, gnl|xenTro1|scaffold_162 (47898-47715) | |
| 655-834, gnl|bosTau2|chr19 (29776059-29776238) | |
| 655-834, gnl|Hg17|chr17 (45043820-45043641) | |
| 655-834, gnl|Mm7|chr11 (95590951-95591130) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 108-254, gnl|bosTau2|chr19 (29765326-29765472) | |
| 108-254, gnl|Hg17|chr17 (45055240-45055094) | |
| 108-254, gnl|Mm7|chr11 (95579558-95579704) | |
| 376-528, gnl|bosTau2|chr19 (29768124-29768276) | |
| 376-528, gnl|canFam2|chr9 (29027784-29027970) | |
| 376-528, gnl|danRer3|chr9 (12713492-12713294) | |
| 376-528, gnl|dasNov1|scaffold_115749 (6378-6564) | |
| 376-528, gnl|echTel1|scaffold_323582 (7947-8144) | |
| 376-528, gnl|fr1|chrUn (38912086-38911903) | |
| 376-528, gnl|galGal2|chrUn (84966684-84966854) | |
| 376-528, gnl|hg17|chr17 (45051583-45051769) | |
| 376-528, gnl|Hg17|chr17 (45051747-45051595) | |
| 376-528, gnl|loxAfr1|scaffold_14391 (52173-52360) | |
| 376-528, gnl|mm7|chr11 (95583435-95583256) | |
| 376-528, gnl|Mm7|chr11 (95583269-95583421) | |
| 376-528, gnl|monDom2|scaffold_18 (44095937-44095750) | |
| 376-528, gnl|oryCun1|scaffold_200549 (22850-23042) | |
| 376-528, gnl|panTro1|chr19_random (30657337-30657526) | |
| 376-528, gnl|rheMac2|chr16 (33850130-33850316) | |
| 376-528, gnl|rn3|chr10 (84181698-84181519) | |
| 376-528, gnl|tetNig1|chr2 (5591617-5591433) | |
| 376-528, gnl|xenTro1|scaffold_162 (47898-47715) | |
| 655-834, gnl|bosTau2|chr19 (29776059-29776238) | |
| 655-834, gnl|Hg17|chr17 (45043820-45043641) | |
| 655-834, gnl|Mm7|chr11 (95590951-95591130) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| eje (0.0988338) |