Non-Coding RNA Search

Ss1.1-Liv1-LVRM10010C04.5

Sequence:


               
               TGGGAAAGGGCAAGCAGCAGCCAGAAATCTTGCTCAAAGAAGTGATCTATGGGAGTTCCC
GACACGCCTGCAGACATTCCCTGGGAAAGGGCAAGCAGCAGCCAGGTGTGAATGAGGCAG
GATGAACTGGACAGGTCTGTACACCTTGCTCAGTGGCGTGAACCGGCATTCTACTGCCAT
TGGCCGAGTATGGCTCTCAGTCATCTTCATCTTCAGAATCATGGTGCTGGTGGTGGCTGC
AGAGAGTGTGTGGGGTGATGAGAAATCTTCCTTCATCTGCAACACCCTCCAGCCTGGCTG
CAACAGCGTCTGCTACGACCACTTTTTCCCCATCTCCCATGTGCGTCTGTGGTCTCTGCA
GCTCATCTTGGTTTCCACCCCAGCTCTTCTCGTGGCCATGCACGTGGCTCACCAGCAGCA
CATAGAAAAGAAAATGCTGCGACTTGAGGGCCATGCCGACCCCCTCCACCTGGAGGAGGT
GAAGAGGCACAAGGTCCACATCTCAGGGACGCTGTGGTGGACCTACGTCATCAGCGTGGT
CTTCCGGCTGCTGTTCGAGGCCGCCTTCATGTACGTCTTTTATCTGCTCTACCCTGGCTA
TGCCATGGTGCGGTTGGTGAAGTGTGAGGCCTACCCCTGCCCCAACACAGTGGACTGCTT
TGTGTCCCGCCCCACCGAGAAGACCGTCTTCACCGTCTTCATGCTGGCCGCCTCCGGCAT
CTGCATCATCCTCAATGTGGCCGAGGTGGTGTACCTCATCTTCCGGGCCTGTGCCCGCCG
AGCCCAGCGCCGCTCCAATCCGCCTTCCCGCAAGGGCTCGGGGGGCTTCGGCCACCGCCT
CTCACCTGAATACAAGCAGAACGAGATCAACAAGCTGCTGAGCGAGCAGGACGGCTCCCT
GAAAGACATACTGCGCCGCAGCCCCGGTACCGGGGCTGGGCTGGCGGAGAAGAGCGACCG
CTGCTCAGCCTGCTGATGCCACAGACCAGGCAACCTCCCATCCTGCCCCTCCACCCTGGC
CCCGGGCTGCCCCTCCTTCTCCCCTGCCGGCTGGCTGAGCAGGCCTCTGCCTGCGAGGGA
TTTGCTCCATCAAAACCCTCCTTCCCTTCCTCCTAGGGCCTTCCGCCTCAGGGGCTGAAG
GGGTGGGGAGCTGGAGGCCACCCACGCCAGTGCTCAAGGCTACTGGGGGTGCGGGCAGCT
CTCTTGGCCCGTATCCCTTCCTCTTCCCTCCCCCTCTCCCTGGGACCCTGGGGACCAGAG
GTAGGATGCTCTGACAGCATCTCCAATTATGAAACTAATCTTAACCCTGTGCTGTCAGAT
ACCCTATTTCTGGAGTCACATCAGTGGGGAGGGAGGTGGGCACATGGAGTGGAGGGAGGG
TGCTGTGGACGTGTGGGTGGAGAAGGGAGGGTAGCCAGTGCCAGAAAAGGAGGCACAGTG
CTTCGCCGAAGGCCACTGAGGAAAAGGAGGACAGGTCTGGGACAGAGGATCTAGGGAGGG
AAAAGCAGGCAGATAAGGTGGAGGGGGGATTGGTCAGGGCCACCTTAGCCTCTAGTCCCC
AAGGCCTCTCTCTGCCTTAAATGTTACACATTAAACAGGATTTTACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGAAAGGGCAAGCAGCAGCCAGAAATCTTGCTCAAAGAAGTGATCTATGGGAGTTCCC
GACACGCCTGCAGACATTCCCTGGGAAAGGGCAAGCAGCAGCCAGGTGTGAATGAGGCAG
GATGAACTGGACAGGTCTGTACACCTTGCTCAGTGGCGTGAACCGGCATTCTACTGCCAT
TGGCCGAGTATGGCTCTCAGTCATCTTCATCTTCAGAATCATGGTGCTGGTGGTGGCTGC
AGAGAGTGTGTGGGGTGATGAGAAATCTTCCTTCATCTGCAACACCCTCCAGCCTGGCTG
CAACAGCGTCTGCTACGACCACTTTTTCCCCATCTCCCATGTGCGTCTGTGGTCTCTGCA
GCTCATCTTGGTTTCCACCCCAGCTCTTCTCGTGGCCATGCACGTGGCTCACCAGCAGCA
CATAGAAAAGAAAATGCTGCGACTTGAGGGCCATGCCGACCCCCTCCACCTGGAGGAGGT
GAAGAGGCACAAGGTCCACATCTCAGGGACGCTGTGGTGGACCTACGTCATCAGCGTGGT
CTTCCGGCTGCTGTTCGAGGCCGCCTTCATGTACGTCTTTTATCTGCTCTACCCTGGCTA
TGCCATGGTGCGGTTGGTGAAGTGTGAGGCCTACCCCTGCCCCAACACAGTGGACTGCTT
TGTGTCCCGCCCCACCGAGAAGACCGTCTTCACCGTCTTCATGCTGGCCGCCTCCGGCAT
CTGCATCATCCTCAATGTGGCCGAGGTGGTGTACCTCATCTTCCGGGCCTGTGCCCGCCG
AGCCCAGCGCCGCTCCAATCCGCCTTCCCGCAAGGGCTCGGGGGGCTTCGGCCACCGCCT
CTCACCTGAATACAAGCAGAACGAGATCAACAAGCTGCTGAGCGAGCAGGACGGCTCCCT
GAAAGACATACTGCGCCGCAGCCCCGGTACCGGGGCTGGGCTGGCGGAGAAGAGCGACCG
CTGCTCAGCCTGCTGATGCCACAGACCAGGCAACCTCCCATCCTGCCCCTCCACCCTGGC
CCCGGGCTGCCCCTCCTTCTCCCCTGCCGGCTGGCTGAGCAGGCCTCTGCCTGCGAGGGA
TTTGCTCCATCAAAACCCTCCTTCCCTTCCTCCTAGGGCCTTCCGCCTCAGGGGCTGAAG
GGGTGGGGAGCTGGAGGCCACCCACGCCAGTGCTCAAGGCTACTGGGGGTGCGGGCAGCT
CTCTTGGCCCGTATCCCTTCCTCTTCCCTCCCCCTCTCCCTGGGACCCTGGGGACCAGAG
GTAGGATGCTCTGACAGCATCTCCAATTATGAAACTAATCTTAACCCTGTGCTGTCAGAT
ACCCTATTTCTGGAGTCACATCAGTGGGGAGGGAGGTGGGCACATGGAGTGGAGGGAGGG
TGCTGTGGACGTGTGGGTGGAGAAGGGAGGGTAGCCAGTGCCAGAAAAGGAGGCACAGTG
CTTCGCCGAAGGCCACTGAGGAAAAGGAGGACAGGTCTGGGACAGAGGATCTAGGGAGGG
AAAAGCAGGCAGATAAGGTGGAGGGGGGATTGGTCAGGGCCACCTTAGCCTCTAGTCCCC
AAGGCCTCTCTCTGCCTTAAATGTTACACATTAAACAGGATTTTACAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|2326389|emb|CAA64623.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|2326389|emb|CAA64623.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               222-341, - strand, RNAz p=0.730298
               

               
               422-541, - strand, RNAz p=0.90474
               

               
               742-1239, - strand, RNAz p=0.999868

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               222-341, - strand, RNAz p=0.730298
               

               
               422-541, - strand, RNAz p=0.90474
               

               
               742-1239, - strand, RNAz p=0.999868

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               103-1240, gnl|bosTau2|chrX (22002232-22003380)
               

               
               103-1240, gnl|Hg17|chrX (70226560-70227674)
               

               
               103-1240, gnl|Mm7|chrX (96711504-96712623)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-1240, gnl|bosTau2|chrX (22002232-22003380)
               

               
               103-1240, gnl|Hg17|chrX (70226560-70227674)
               

               
               103-1240, gnl|Mm7|chrX (96711504-96712623)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               cty (1.24896)
               

               
               fli (0.202881)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (1.24896)
               

               
               fli (0.202881)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)

	222-341, - strand, RNAz p=0.730298
	422-541, - strand, RNAz p=0.90474
	742-1239, - strand, RNAz p=0.999868

	103-1240, gnl\|bosTau2\|chrX (22002232-22003380)
	103-1240, gnl\|Hg17\|chrX (70226560-70227674)
	103-1240, gnl\|Mm7\|chrX (96711504-96712623)