Ss1.1-Liv1-LVRM10012B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGCCCGCCCCAGCTATCATGGCGGCTCCCTTGGCCTTGGTGCTGGTGGTGGCAGTGAC TGTGCGGGCAGCCTTGTTTCGCTCCAGTCTGGCCGAGTTCATCTCGGAGCGGGTGGAGGT GGTGTCCCCACTGAGCTCTTGGAAGAGAGTGGTTGAAGGCCTCTCACTGTTGGACTTGGG AGTGTCTCCGTATTCTGGAGCAGTATTTCATGAAACTCCATTAATAATATACCTCTTTCA TTTCCTGATTGACTATGCTGAATTGGTATTTATGATAACCGACGCACTCACTGCCATTGC CTTGTATTTTGCAATCCAAGACTTCAATAAAGTTGTGTTCAAAAAGCAGAAACTCCTCCT AGAACTAGACCAGTATGCCCCAGATGTGGCTGAACTCATCCGGACCCCTATGGAAATGCG TCACATCCCTCTGAAAGTGGCCGTGTTCTATCTCTTAAATCCTTACACGGTCTTGTCTTG TGTTGCCAAGTCTACCTGCGCCATCAACAACACCCTCATTGCTTTCTTCATTTTGACCAC GATGAAAGGTAGTGCCTTCCTCAGTGCCATCTTTCTTGCCTTAGCAACATACCAGTCTCT GTATCCACTCACTTTGTTTGTCCCAGGACTCCTCTATCTCCTCCAGCGGCAGTACATACC GGTGAAAGTGAAGAGCAAAGCCTTCTGGATCTTCTCTTGGGAGTATGCCATGATGTATGT GGGAAGCCTAGTGGTAATCGTTTGCCTCTCCTTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGCCCGCCCCAGCTATCATGGCGGCTCCCTTGGCCTTGGTGCTGGTGGTGGCAGTGAC TGTGCGGGCAGCCTTGTTTCGCTCCAGTCTGGCCGAGTTCATCTCGGAGCGGGTGGAGGT GGTGTCCCCACTGAGCTCTTGGAAGAGAGTGGTTGAAGGCCTCTCACTGTTGGACTTGGG AGTGTCTCCGTATTCTGGAGCAGTATTTCATGAAACTCCATTAATAATATACCTCTTTCA TTTCCTGATTGACTATGCTGAATTGGTATTTATGATAACCGACGCACTCACTGCCATTGC CTTGTATTTTGCAATCCAAGACTTCAATAAAGTTGTGTTCAAAAAGCAGAAACTCCTCCT AGAACTAGACCAGTATGCCCCAGATGTGGCTGAACTCATCCGGACCCCTATGGAAATGCG TCACATCCCTCTGAAAGTGGCCGTGTTCTATCTCTTAAATCCTTACACGGTCTTGTCTTG TGTTGCCAAGTCTACCTGCGCCATCAACAACACCCTCATTGCTTTCTTCATTTTGACCAC GATGAAAGGTAGTGCCTTCCTCAGTGCCATCTTTCTTGCCTTAGCAACATACCAGTCTCT GTATCCACTCACTTTGTTTGTCCCAGGACTCCTCTATCTCCTCCAGCGGCAGTACATACC GGTGAAAGTGAAGAGCAAAGCCTTCTGGATCTTCTCTTGGGAGTATGCCATGATGTATGT GGGAAGCCTAGTGGTAATCGTTTGCCTCTCCTTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 32-149, + strand, RNAz p=0.821622 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 32-149, + strand, RNAz p=0.821622 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_080476, + |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 1-149, gnl|bosTau2|chr13 (47270961-47271109) | |
| 1-149, gnl|canFam2|chr24 (26739668-26739811) | |
| 1-149, gnl|canFam2|chr24 (26739674-26739825) | |
| 1-149, gnl|danRer3|chrUn (19353838-19353700) | |
| 1-149, gnl|dasNov1|scaffold_41150 (1773-1630) | |
| 1-149, gnl|dasNov1|scaffold_41150 (1767-1616) | |
| 1-149, gnl|echTel1|scaffold_186245 (7982-8125) | |
| 1-149, gnl|echTel1|scaffold_186245 (7990-8139) | |
| 1-149, gnl|fr1|chrUn (224969215-224969080) | |
| 1-149, gnl|galGal2|chr20 (487762-487619) | |
| 1-149, gnl|hg17|chr20 (32728416-32728559) | |
| 1-149, gnl|Hg17|chr20 (32728569-32728421) | |
| 1-149, gnl|hg17|chr9 (70761850-70762002) | |
| 1-149, gnl|mm7|chr2 (155098119-155098262) | |
| 1-149, gnl|mm7|chr2 (155098125-155098276) | |
| 1-149, gnl|Mm7|chr2 (155098272-155098124) | |
| 1-149, gnl|monDom2|scaffold_6 (12345673-12345530) | |
| 1-149, gnl|oryCun1|scaffold_187271 (69259-69402) | |
| 1-149, gnl|oryCun1|scaffold_187271 (69265-69416) | |
| 1-149, gnl|panTro1|chr11 (54568475-54568626) | |
| 1-149, gnl|panTro1|chr21 (34735744-34735887) | |
| 1-149, gnl|rheMac2|chr10 (29897772-29897629) | |
| 1-149, gnl|rheMac2|chr15 (79677592-79677725) | |
| 1-149, gnl|rn3|chr3 (145747404-145747547) | |
| 1-149, gnl|rn3|chr3 (145747410-145747561) | |
| 1-149, gnl|tetNig1|chrUn_random (5805601-5805735) | |
| 1-149, gnl|tetNig1|chrUn_random (5805606-5805734) | |
| 1-149, gnl|xenTro1|scaffold_35 (1359866-1359723) | |
| 1-149, gnl|xenTro1|scaffold_35 (1359860-1359707) | |
| 337-450, gnl|bosTau2|chr13 (47292185-47292298) | |
| 337-450, gnl|canFam2|chr24 (26705957-26706077) | |
| 337-450, gnl|canFam2|chr24 (26705964-26706073) | |
| 337-450, gnl|dasNov1|scaffold_76717 (3366-3486) | |
| 337-450, gnl|dasNov1|scaffold_76717 (3371-3482) | |
| 337-450, gnl|hg17|chr20 (32689335-32689458) | |
| 337-450, gnl|Hg17|chr20 (32689451-32689338) | |
| 337-450, gnl|hg17|chr9 (70761550-70761661) | |
| 337-450, gnl|loxAfr1|scaffold_118473 (5593-5471) | |
| 337-450, gnl|loxAfr1|scaffold_118473 (5588-5475) | |
| 337-450, gnl|mm7|chr2 (155072001-155072121) | |
| 337-450, gnl|mm7|chr2 (155072006-155072117) | |
| 337-450, gnl|Mm7|chr2 (155072117-155072004) | |
| 337-450, gnl|monDom2|scaffold_6 (12385905-12385785) | |
| 337-450, gnl|oryCun1|scaffold_187271 (29766-29886) | |
| 337-450, gnl|oryCun1|scaffold_187271 (29771-29882) | |
| 337-450, gnl|panTro1|chr11 (54568142-54568286) | |
| 337-450, gnl|panTro1|chr21 (34700012-34700136) | |
| 337-450, gnl|rheMac2|chr10 (29928153-29928028) | |
| 337-450, gnl|rheMac2|chr15 (79677292-79677403) | |
| 337-450, gnl|rn3|chr3 (145713240-145713360) | |
| 337-450, gnl|rn3|chr3 (145713245-145713356) | |
| 337-450, gnl|tetNig1|chrUn_random (5803825-5803948) | |
| 337-450, gnl|tetNig1|chrUn_random (5803839-5803941) | |
| 637-756, gnl|bosTau2|chr13 (47331396-47331515) | |
| 637-756, gnl|canFam2|chr24 (26672453-26672643) | |
| 637-756, gnl|danRer3|chrUn (19604499-19604321) | |
| 637-756, gnl|echTel1|scaffold_307793 (953-754) | |
| 637-756, gnl|fr1|chrUn (224971390-224971190) | |
| 637-756, gnl|galGal2|chr20 (500609-500422) | |
| 637-756, gnl|hg17|chr20 (32639883-32640089) | |
| 637-756, gnl|Hg17|chr20 (32640081-32639963) | |
| 637-756, gnl|mm7|chr2 (155042032-155042231) | |
| 637-756, gnl|Mm7|chr2 (155042223-155042104) | |
| 637-756, gnl|monDom2|scaffold_6 (12410434-12410260) | |
| 637-756, gnl|panTro1|chr21 (34649760-34649966) | |
| 637-756, gnl|rheMac2|chr10 (29979901-29979694) | |
| 637-756, gnl|rn3|chr3 (145686076-145686283) | |
| 637-756, gnl|tetNig1|chrUn_random (5802650-5802826) | |
| 637-756, gnl|xenTro1|scaffold_35 (1367365-1367168) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-149, gnl|bosTau2|chr13 (47270961-47271109) | |
| 1-149, gnl|canFam2|chr24 (26739668-26739811) | |
| 1-149, gnl|canFam2|chr24 (26739674-26739825) | |
| 1-149, gnl|danRer3|chrUn (19353838-19353700) | |
| 1-149, gnl|dasNov1|scaffold_41150 (1773-1630) | |
| 1-149, gnl|dasNov1|scaffold_41150 (1767-1616) | |
| 1-149, gnl|echTel1|scaffold_186245 (7982-8125) | |
| 1-149, gnl|echTel1|scaffold_186245 (7990-8139) | |
| 1-149, gnl|fr1|chrUn (224969215-224969080) | |
| 1-149, gnl|galGal2|chr20 (487762-487619) | |
| 1-149, gnl|hg17|chr20 (32728416-32728559) | |
| 1-149, gnl|Hg17|chr20 (32728569-32728421) | |
| 1-149, gnl|hg17|chr9 (70761850-70762002) | |
| 1-149, gnl|mm7|chr2 (155098119-155098262) | |
| 1-149, gnl|mm7|chr2 (155098125-155098276) | |
| 1-149, gnl|Mm7|chr2 (155098272-155098124) | |
| 1-149, gnl|monDom2|scaffold_6 (12345673-12345530) | |
| 1-149, gnl|oryCun1|scaffold_187271 (69259-69402) | |
| 1-149, gnl|oryCun1|scaffold_187271 (69265-69416) | |
| 1-149, gnl|panTro1|chr11 (54568475-54568626) | |
| 1-149, gnl|panTro1|chr21 (34735744-34735887) | |
| 1-149, gnl|rheMac2|chr10 (29897772-29897629) | |
| 1-149, gnl|rheMac2|chr15 (79677592-79677725) | |
| 1-149, gnl|rn3|chr3 (145747404-145747547) | |
| 1-149, gnl|rn3|chr3 (145747410-145747561) | |
| 1-149, gnl|tetNig1|chrUn_random (5805601-5805735) | |
| 1-149, gnl|tetNig1|chrUn_random (5805606-5805734) | |
| 1-149, gnl|xenTro1|scaffold_35 (1359866-1359723) | |
| 1-149, gnl|xenTro1|scaffold_35 (1359860-1359707) | |
| 337-450, gnl|bosTau2|chr13 (47292185-47292298) | |
| 337-450, gnl|canFam2|chr24 (26705957-26706077) | |
| 337-450, gnl|canFam2|chr24 (26705964-26706073) | |
| 337-450, gnl|dasNov1|scaffold_76717 (3366-3486) | |
| 337-450, gnl|dasNov1|scaffold_76717 (3371-3482) | |
| 337-450, gnl|hg17|chr20 (32689335-32689458) | |
| 337-450, gnl|Hg17|chr20 (32689451-32689338) | |
| 337-450, gnl|hg17|chr9 (70761550-70761661) | |
| 337-450, gnl|loxAfr1|scaffold_118473 (5593-5471) | |
| 337-450, gnl|loxAfr1|scaffold_118473 (5588-5475) | |
| 337-450, gnl|mm7|chr2 (155072001-155072121) | |
| 337-450, gnl|mm7|chr2 (155072006-155072117) | |
| 337-450, gnl|Mm7|chr2 (155072117-155072004) | |
| 337-450, gnl|monDom2|scaffold_6 (12385905-12385785) | |
| 337-450, gnl|oryCun1|scaffold_187271 (29766-29886) | |
| 337-450, gnl|oryCun1|scaffold_187271 (29771-29882) | |
| 337-450, gnl|panTro1|chr11 (54568142-54568286) | |
| 337-450, gnl|panTro1|chr21 (34700012-34700136) | |
| 337-450, gnl|rheMac2|chr10 (29928153-29928028) | |
| 337-450, gnl|rheMac2|chr15 (79677292-79677403) | |
| 337-450, gnl|rn3|chr3 (145713240-145713360) | |
| 337-450, gnl|rn3|chr3 (145713245-145713356) | |
| 337-450, gnl|tetNig1|chrUn_random (5803825-5803948) | |
| 337-450, gnl|tetNig1|chrUn_random (5803839-5803941) | |
| 637-756, gnl|bosTau2|chr13 (47331396-47331515) | |
| 637-756, gnl|canFam2|chr24 (26672453-26672643) | |
| 637-756, gnl|danRer3|chrUn (19604499-19604321) | |
| 637-756, gnl|echTel1|scaffold_307793 (953-754) | |
| 637-756, gnl|fr1|chrUn (224971390-224971190) | |
| 637-756, gnl|galGal2|chr20 (500609-500422) | |
| 637-756, gnl|hg17|chr20 (32639883-32640089) | |
| 637-756, gnl|Hg17|chr20 (32640081-32639963) | |
| 637-756, gnl|mm7|chr2 (155042032-155042231) | |
| 637-756, gnl|Mm7|chr2 (155042223-155042104) | |
| 637-756, gnl|monDom2|scaffold_6 (12410434-12410260) | |
| 637-756, gnl|panTro1|chr21 (34649760-34649966) | |
| 637-756, gnl|rheMac2|chr10 (29979901-29979694) | |
| 637-756, gnl|rn3|chr3 (145686076-145686283) | |
| 637-756, gnl|tetNig1|chrUn_random (5802650-5802826) | |
| 637-756, gnl|xenTro1|scaffold_35 (1367365-1367168) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| cov (0.132153) |