Ss1.1-Liv1-LVRM10015C04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCATTTCCACACTGTTGCTTCAC TTGTGGCCACAAGCACAGGCCTCGCCCCAGCCTGGCCCCAGGACTTTGACAGAACTCAGA GCTGGCTCAAAGGGCCCCTTTGTCCCTGGGAGGCTTGTCACTCCCTGGGCCTCAAGGCAG AGCCCCGTGCAGCCGCCCCACCTCCACGAAGGCCTCCACGCAGCGGTCAATGTCCTCCTC GCTGTGCACGGCTGAGATCTGGACCCGGATCCGGGCCTTGCCCTTGGGGACCACGGGGTA GCTGAACCCGATGACAAAGATGCCTCTCTTTTGCATGTCATCTGCCATGCAAGAGGCCAG CCGAGCATCACCCAGCATCACAGGGCAGATGGGGTGATTGGCTCCTGAGATGGTGAAGCC GGCAGCCTCCATCTTCCTGCGGAATCGCTGGGTCTTGGCTGCCATAGACTGGACGATGGC GTTGTTCTCCATGAGCAGGTCCAGGGCCTTGGAGGCACAGCCGACAACAGCAGGTGGCAG GCTGTTGGAGAAGAGGTAGGGCCGGGCACGCTGCCGCAGCAGGGACACCAGGGATCCAGG CCCCGTCGTGTAGCCCCCTGAGGCTCCGCCCAGCGCCTTCCCCAGAGTGGAGTTGATGAT GGCGACCTGGTCCATCACGCCCAGCAGCTCATCGGTGCCCCGTCCAGTGGCCCCCAGGAA GCCGGTGGCATGGCAATCGTCCACAAAGACCAAGGCACCATATTGAGAGGCAAGGCGGCA GATGTCCTGCAGGGGCGCGATGTCACCGTCCATGGAAAAGGTCCCATCAGTGGCCACTAG GCGCAGTCGATGCTTCTGGGCCTCCTGCAGCTTGGCCTCCAGATCGGCCACGTCCAAGTG GCGGTAGCGGTACTTGTGGGCCTTGCACAGACGGATGCCGTCGATGATGGAGGCATGGTT CAGCTCGTCCGACAGGACCGCGTCCTCTGGGGTCAGCAGGGCCTCAAAGAGGCCGGCATT GGCATCAAAACAGCTGGGGTAGAGGATGGCGTCCTCCCGCTGGTGGAAGCGGGCGATCTT CGCCTCCAGATCCTTGTGGATGCTCTGGGTCCCACAGATGAATCGGACAGAGCTAAGGCC GGCTCCAAACTCCTCCAGGGCCTGCAGACCTGCCTGGATCACCTCGGGGTGGCTGCTCAG GCCCAGGTAGTTGTTGGCACAGAAGTTAATGATTCCTCCCGAGACGCCGTCCACGTGTAT GCGCGGCCCCTGACGGGACGTGATGACCCGCTCGCTTTTCCAGGTGCCAGCCTCGCGGAT GCCTTCCAGCTCCTCCTCCAGAATGCCACGCAGCTGAGCCAGCGCTGACTGCGGGCGACA GCCGCGGGGGGCCCGGGAGAGGGCAGCGCAGAGGATGCGGCCGGCCCACATCGCGTCCAC CTCGCCGGAGCGCGCCTGCCCGCTGCGGGCTGTACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCATTTCCACACTGTTGCTTCAC TTGTGGCCACAAGCACAGGCCTCGCCCCAGCCTGGCCCCAGGACTTTGACAGAACTCAGA GCTGGCTCAAAGGGCCCCTTTGTCCCTGGGAGGCTTGTCACTCCCTGGGCCTCAAGGCAG AGCCCCGTGCAGCCGCCCCACCTCCACGAAGGCCTCCACGCAGCGGTCAATGTCCTCCTC GCTGTGCACGGCTGAGATCTGGACCCGGATCCGGGCCTTGCCCTTGGGGACCACGGGGTA GCTGAACCCGATGACAAAGATGCCTCTCTTTTGCATGTCATCTGCCATGCAAGAGGCCAG CCGAGCATCACCCAGCATCACAGGGCAGATGGGGTGATTGGCTCCTGAGATGGTGAAGCC GGCAGCCTCCATCTTCCTGCGGAATCGCTGGGTCTTGGCTGCCATAGACTGGACGATGGC GTTGTTCTCCATGAGCAGGTCCAGGGCCTTGGAGGCACAGCCGACAACAGCAGGTGGCAG GCTGTTGGAGAAGAGGTAGGGCCGGGCACGCTGCCGCAGCAGGGACACCAGGGATCCAGG CCCCGTCGTGTAGCCCCCTGAGGCTCCGCCCAGCGCCTTCCCCAGAGTGGAGTTGATGAT GGCGACCTGGTCCATCACGCCCAGCAGCTCATCGGTGCCCCGTCCAGTGGCCCCCAGGAA GCCGGTGGCATGGCAATCGTCCACAAAGACCAAGGCACCATATTGAGAGGCAAGGCGGCA GATGTCCTGCAGGGGCGCGATGTCACCGTCCATGGAAAAGGTCCCATCAGTGGCCACTAG GCGCAGTCGATGCTTCTGGGCCTCCTGCAGCTTGGCCTCCAGATCGGCCACGTCCAAGTG GCGGTAGCGGTACTTGTGGGCCTTGCACAGACGGATGCCGTCGATGATGGAGGCATGGTT CAGCTCGTCCGACAGGACCGCGTCCTCTGGGGTCAGCAGGGCCTCAAAGAGGCCGGCATT GGCATCAAAACAGCTGGGGTAGAGGATGGCGTCCTCCCGCTGGTGGAAGCGGGCGATCTT CGCCTCCAGATCCTTGTGGATGCTCTGGGTCCCACAGATGAATCGGACAGAGCTAAGGCC GGCTCCAAACTCCTCCAGGGCCTGCAGACCTGCCTGGATCACCTCGGGGTGGCTGCTCAG GCCCAGGTAGTTGTTGGCACAGAAGTTAATGATTCCTCCCGAGACGCCGTCCACGTGTAT GCGCGGCCCCTGACGGGACGTGATGACCCGCTCGCTTTTCCAGGTGCCAGCCTCGCGGAT GCCTTCCAGCTCCTCCTCCAGAATGCCACGCAGCTGAGCCAGCGCTGACTGCGGGCGACA GCCGCGGGGGGCCCGGGAGAGGGCAGCGCAGAGGATGCGGCCGGCCCACATCGCGTCCAC CTCGCCGGAGCGCGCCTGCCCGCTGCGGGCTGTACG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 153-325, gnl|bosTau2|chr5 (67170240-67170412) | |
| 153-325, gnl|Hg17|chr22 (36537244-36537072) | |
| 153-325, gnl|Mm7|chr15 (79120265-79120093) | |
| 446-622, gnl|bosTau2|chr5 (67171420-67171596) | |
| 446-622, gnl|canFam2|chr10 (29894578-29894455) | |
| 446-622, gnl|danRer3|chr20 (10416961-10417084) | |
| 446-622, gnl|dasNov1|scaffold_16275 (38721-38598) | |
| 446-622, gnl|echTel1|scaffold_20855 (2235-2118) | |
| 446-622, gnl|fr1|chrUn (188594757-188594634) | |
| 446-622, gnl|galGal2|chr1 (47826031-47825908) | |
| 446-622, gnl|hg17|chr22 (36536164-36536287) | |
| 446-622, gnl|Hg17|chr22 (36536341-36536165) | |
| 446-622, gnl|mm7|chr15 (79119213-79119336) | |
| 446-622, gnl|Mm7|chr15 (79119390-79119214) | |
| 446-622, gnl|monDom2|scaffold_297 (170015-169892) | |
| 446-622, gnl|oryCun1|scaffold_204264 (126587-126468) | |
| 446-622, gnl|panTro1|chr23 (36713456-36713579) | |
| 446-622, gnl|rheMac2|chr10 (81733551-81733674) | |
| 446-622, gnl|rn3|chr7 (117043368-117043491) | |
| 446-622, gnl|tetNig1|chrUn_random (127606536-127606413) | |
| 446-622, gnl|xenTro1|scaffold_246 (859050-858927) | |
| 700-858, gnl|bosTau2|chr5 (67171985-67172143) | |
| 700-858, gnl|canFam2|chr10 (29894977-29895098) | |
| 700-858, gnl|danRer3|chr20 (10415993-10415883) | |
| 700-858, gnl|dasNov1|scaffold_16275 (39126-39247) | |
| 700-858, gnl|echTel1|scaffold_20855 (2316-2437) | |
| 700-858, gnl|fr1|chrUn (188596311-188596433) | |
| 700-858, gnl|galGal2|chr1 (47827362-47827485) | |
| 700-858, gnl|hg17|chr14 (63131022-63131145) | |
| 700-858, gnl|Hg17|chr22 (36535788-36535630) | |
| 700-858, gnl|mm7|chr15 (79118885-79118762) | |
| 700-858, gnl|Mm7|chr15 (79118884-79118726) | |
| 700-858, gnl|monDom2|scaffold_297 (171313-171436) | |
| 700-858, gnl|oryCun1|scaffold_172831 (40985-40868) | |
| 700-858, gnl|panTro1|chr15 (62690949-62691072) | |
| 700-858, gnl|rheMac2|chr7 (126592755-126592881) | |
| 700-858, gnl|rn3|chr7 (117042266-117042143) | |
| 700-858, gnl|tetNig1|chrUn_random (127609820-127609942) | |
| 700-858, gnl|xenTro1|scaffold_246 (861176-861299) | |
| 1002-1107, gnl|bosTau2|chr5 (67173335-67173440) | |
| 1002-1107, gnl|Hg17|chr22 (36533496-36533391) | |
| 1002-1107, gnl|Mm7|chr15 (79118014-79117909) | |
| 1235-1464, gnl|bosTau2|chr5 (67176538-67176767) | |
| 1235-1464, gnl|Hg17|chr22 (36528671-36528442) | |
| 1235-1464, gnl|Mm7|chr15 (79114073-79113854) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-325, gnl|bosTau2|chr5 (67170240-67170412) | |
| 153-325, gnl|Hg17|chr22 (36537244-36537072) | |
| 153-325, gnl|Mm7|chr15 (79120265-79120093) | |
| 446-622, gnl|bosTau2|chr5 (67171420-67171596) | |
| 446-622, gnl|canFam2|chr10 (29894578-29894455) | |
| 446-622, gnl|danRer3|chr20 (10416961-10417084) | |
| 446-622, gnl|dasNov1|scaffold_16275 (38721-38598) | |
| 446-622, gnl|echTel1|scaffold_20855 (2235-2118) | |
| 446-622, gnl|fr1|chrUn (188594757-188594634) | |
| 446-622, gnl|galGal2|chr1 (47826031-47825908) | |
| 446-622, gnl|hg17|chr22 (36536164-36536287) | |
| 446-622, gnl|Hg17|chr22 (36536341-36536165) | |
| 446-622, gnl|mm7|chr15 (79119213-79119336) | |
| 446-622, gnl|Mm7|chr15 (79119390-79119214) | |
| 446-622, gnl|monDom2|scaffold_297 (170015-169892) | |
| 446-622, gnl|oryCun1|scaffold_204264 (126587-126468) | |
| 446-622, gnl|panTro1|chr23 (36713456-36713579) | |
| 446-622, gnl|rheMac2|chr10 (81733551-81733674) | |
| 446-622, gnl|rn3|chr7 (117043368-117043491) | |
| 446-622, gnl|tetNig1|chrUn_random (127606536-127606413) | |
| 446-622, gnl|xenTro1|scaffold_246 (859050-858927) | |
| 700-858, gnl|bosTau2|chr5 (67171985-67172143) | |
| 700-858, gnl|canFam2|chr10 (29894977-29895098) | |
| 700-858, gnl|danRer3|chr20 (10415993-10415883) | |
| 700-858, gnl|dasNov1|scaffold_16275 (39126-39247) | |
| 700-858, gnl|echTel1|scaffold_20855 (2316-2437) | |
| 700-858, gnl|fr1|chrUn (188596311-188596433) | |
| 700-858, gnl|galGal2|chr1 (47827362-47827485) | |
| 700-858, gnl|hg17|chr14 (63131022-63131145) | |
| 700-858, gnl|Hg17|chr22 (36535788-36535630) | |
| 700-858, gnl|mm7|chr15 (79118885-79118762) | |
| 700-858, gnl|Mm7|chr15 (79118884-79118726) | |
| 700-858, gnl|monDom2|scaffold_297 (171313-171436) | |
| 700-858, gnl|oryCun1|scaffold_172831 (40985-40868) | |
| 700-858, gnl|panTro1|chr15 (62690949-62691072) | |
| 700-858, gnl|rheMac2|chr7 (126592755-126592881) | |
| 700-858, gnl|rn3|chr7 (117042266-117042143) | |
| 700-858, gnl|tetNig1|chrUn_random (127609820-127609942) | |
| 700-858, gnl|xenTro1|scaffold_246 (861176-861299) | |
| 1002-1107, gnl|bosTau2|chr5 (67173335-67173440) | |
| 1002-1107, gnl|Hg17|chr22 (36533496-36533391) | |
| 1002-1107, gnl|Mm7|chr15 (79118014-79117909) | |
| 1235-1464, gnl|bosTau2|chr5 (67176538-67176767) | |
| 1235-1464, gnl|Hg17|chr22 (36528671-36528442) | |
| 1235-1464, gnl|Mm7|chr15 (79114073-79113854) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nje (0.49776) | |
| elu (0.385356) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| ute (0.132784) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.49776) | |
| elu (0.385356) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| ute (0.132784) |