Ss1.1-Liv1-LVRM10017H02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGGGAGGGAGCCGGAAAGGACCCAAGCCACCCTGCGGGATTTAGATGGTGTAGAAGCG CTTATTTCTTCCGTAGAGTCTGGGCTTCACCTCTACCGCGCCCTGTACCCTTCCTGGGGT CTTTTTTGCCTCCTTCCTAGGTCCTTTGCCTCCTGTCCCGGAAAGCCGTCTCACTGCCTC ACGATGCCCCAGCTCGGATTCCTGCATGGAAGGGCCTGGGCTGCGCTGCTTGGCCAGCTC CGGCGGCCGCCCGGTGCCGTATGCATTGGGGCGGTCCGTTCTCATAGCCAGGTTGCAGAG GCAACATTAGCATCCCAACTGAAACCACATAAAGAGAAACCAAATTTTATTCTCAAGACC CCAAAGGGCACTAGAGATTTTAGTCCCCAGCAGATGGTTGTGAGGGAGAAAATTCTTGAT ATGGTTGTTAGCTGCTTTAAACGTCATGGAGCAAAGAGGTTGGATACCCCAGCATTTGAA CTAAAGGAAATGCTTACTGAGAGGTATGGCGAGGACTCTGGGCTCATCTACGATCTGAAG GATCAGGGTGGAGAGCTGCTGTCTTTGCGCTATGACCTTACTGTCCCTTTTGCTCGTTAT CTGGCCATGAATAAAGTGAAGAAGATGAAACGCTACCATGTTGGAAAGGTGTGGCGGCGG GAGAGTCCAACCATAGTCCAAGGCCGCTACAGGGAGTTCTGCCAGTGTGATTTTGACATT GCTGGTCATTTTGACCCTATGATCCCTGATGCAGAATGTTTGAAGATCATGTGTGAAATC CTCAGTGGGTTGCAGCTGGGGGATTTTCTCATTAAGGTGAGGCCAGGGCTGAGGACTGAG CAGAGAAGTCTGGATTTTGCCTGATGGTGTCTCAAAACATTGGTGACCCCCACCATTAAG CCTGCAGTGCTAGGACTTTCTTATTTCATATAGATCTATGCTTCTGTAGTCATCCTATGA AATTTCTTTTCTATCCTTTTTATGGATCAGGAGACTAGGGGACTGCCATTGTTTTGAGGG AGACGTCATTGACAAGACACTTGGGTTGTCCATTGAGTTCACAGGTCAATGACCGGCGGC TTTTGGATGGGATATTTGCTGTCTGTGGTGTTCCTGAAAGCAAGTTCCATGCCATCTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGGGAGGGAGCCGGAAAGGACCCAAGCCACCCTGCGGGATTTAGATGGTGTAGAAGCG CTTATTTCTTCCGTAGAGTCTGGGCTTCACCTCTACCGCGCCCTGTACCCTTCCTGGGGT CTTTTTTGCCTCCTTCCTAGGTCCTTTGCCTCCTGTCCCGGAAAGCCGTCTCACTGCCTC ACGATGCCCCAGCTCGGATTCCTGCATGGAAGGGCCTGGGCTGCGCTGCTTGGCCAGCTC CGGCGGCCGCCCGGTGCCGTATGCATTGGGGCGGTCCGTTCTCATAGCCAGGTTGCAGAG GCAACATTAGCATCCCAACTGAAACCACATAAAGAGAAACCAAATTTTATTCTCAAGACC CCAAAGGGCACTAGAGATTTTAGTCCCCAGCAGATGGTTGTGAGGGAGAAAATTCTTGAT ATGGTTGTTAGCTGCTTTAAACGTCATGGAGCAAAGAGGTTGGATACCCCAGCATTTGAA CTAAAGGAAATGCTTACTGAGAGGTATGGCGAGGACTCTGGGCTCATCTACGATCTGAAG GATCAGGGTGGAGAGCTGCTGTCTTTGCGCTATGACCTTACTGTCCCTTTTGCTCGTTAT CTGGCCATGAATAAAGTGAAGAAGATGAAACGCTACCATGTTGGAAAGGTGTGGCGGCGG GAGAGTCCAACCATAGTCCAAGGCCGCTACAGGGAGTTCTGCCAGTGTGATTTTGACATT GCTGGTCATTTTGACCCTATGATCCCTGATGCAGAATGTTTGAAGATCATGTGTGAAATC CTCAGTGGGTTGCAGCTGGGGGATTTTCTCATTAAGGTGAGGCCAGGGCTGAGGACTGAG CAGAGAAGTCTGGATTTTGCCTGATGGTGTCTCAAAACATTGGTGACCCCCACCATTAAG CCTGCAGTGCTAGGACTTTCTTATTTCATATAGATCTATGCTTCTGTAGTCATCCTATGA AATTTCTTTTCTATCCTTTTTATGGATCAGGAGACTAGGGGACTGCCATTGTTTTGAGGG AGACGTCATTGACAAGACACTTGGGTTGTCCATTGAGTTCACAGGTCAATGACCGGCGGC TTTTGGATGGGATATTTGCTGTCTGTGGTGTTCCTGAAAGCAAGTTCCATGCCATCTGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 373-490, + strand, RNAz p=0.514008 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 373-490, + strand, RNAz p=0.514008 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 4-293, gnl|bosTau2|chr7 (30467534-30467244) | |
| 4-293, gnl|Hg17|chr5 (140051233-140051527) | |
| 4-293, gnl|Mm7|chr18 (37159438-37159697) | |
| 365-490, gnl|bosTau2|chr7 (30465418-30465293) | |
| 365-490, gnl|canFam2|chr2 (38695412-38695506) | |
| 365-490, gnl|danRer3|chr14 (3642210-3642116) | |
| 365-490, gnl|dasNov1|scaffold_23651 (3386-3480) | |
| 365-490, gnl|echTel1|scaffold_292061 (89441-89347) | |
| 365-490, gnl|fr1|chrUn (193327311-193327405) | |
| 365-490, gnl|galGal2|chr13 (237287-237381) | |
| 365-490, gnl|hg17|chr5 (140053699-140053793) | |
| 365-490, gnl|Hg17|chr5 (140053702-140053827) | |
| 365-490, gnl|loxAfr1|scaffold_47616 (3063-3157) | |
| 365-490, gnl|mm7|chr18 (37162065-37162159) | |
| 365-490, gnl|Mm7|chr18 (37162068-37162193) | |
| 365-490, gnl|monDom2|scaffold_6 (68117981-68117887) | |
| 365-490, gnl|oryCun1|scaffold_212741 (37693-37787) | |
| 365-490, gnl|panTro1|chr4 (146672217-146672311) | |
| 365-490, gnl|rheMac2|chr6 (137094936-137095030) | |
| 365-490, gnl|rn3|chr18 (29511917-29512011) | |
| 365-490, gnl|tetNig1|chrUn_random (103421593-103421499) | |
| 709-1140, gnl|bosTau2|chr7 (30464032-30463593) | |
| 709-1140, gnl|Hg17|chr5 (140055507-140055947) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-293, gnl|bosTau2|chr7 (30467534-30467244) | |
| 4-293, gnl|Hg17|chr5 (140051233-140051527) | |
| 4-293, gnl|Mm7|chr18 (37159438-37159697) | |
| 365-490, gnl|bosTau2|chr7 (30465418-30465293) | |
| 365-490, gnl|canFam2|chr2 (38695412-38695506) | |
| 365-490, gnl|danRer3|chr14 (3642210-3642116) | |
| 365-490, gnl|dasNov1|scaffold_23651 (3386-3480) | |
| 365-490, gnl|echTel1|scaffold_292061 (89441-89347) | |
| 365-490, gnl|fr1|chrUn (193327311-193327405) | |
| 365-490, gnl|galGal2|chr13 (237287-237381) | |
| 365-490, gnl|hg17|chr5 (140053699-140053793) | |
| 365-490, gnl|Hg17|chr5 (140053702-140053827) | |
| 365-490, gnl|loxAfr1|scaffold_47616 (3063-3157) | |
| 365-490, gnl|mm7|chr18 (37162065-37162159) | |
| 365-490, gnl|Mm7|chr18 (37162068-37162193) | |
| 365-490, gnl|monDom2|scaffold_6 (68117981-68117887) | |
| 365-490, gnl|oryCun1|scaffold_212741 (37693-37787) | |
| 365-490, gnl|panTro1|chr4 (146672217-146672311) | |
| 365-490, gnl|rheMac2|chr6 (137094936-137095030) | |
| 365-490, gnl|rn3|chr18 (29511917-29512011) | |
| 365-490, gnl|tetNig1|chrUn_random (103421593-103421499) | |
| 709-1140, gnl|bosTau2|chr7 (30464032-30463593) | |
| 709-1140, gnl|Hg17|chr5 (140055507-140055947) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| cly (0.120642) | |
| eru (0.120048) |