Ss1.1-Liv1-LVRM10019E12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTCAACAATCACGAGTTCGGCTGGCTCATCCCCAGGGGCTGGGGTATCCTGGATCAGAT GGATCAGATAAATCTGGAGGACATGCTGGCCCCCCTGAAGCCCTTCGTGGGCGGACCGGA TGCGCCTGCTGAGGTGATTCCCACCATCATAGATGAATACCTGGGCAGGCGCTCAGATGG ACAAGCCAAACGAGAAGCCTTCCAGGAATTGATGGGTGATGTCATCATGCACTTTCCTGT GTTGGAGTTTTCTAGAAACCTCCATGCTGCTGGGGCCTCCGTCTTTTTCTACGAGTTCCA GCATCGACCTAGTTCCTTTGCGAAGATCAAGCCGGCCTGGGTGCAGGCTGACCATGGGGC TGAGATGCCCTTCGTGTTTGGGGGTCCTTTCCTCACGGACGAGAGCTCCATGCTGGCCTT TCCAGATGCCACAGAGGAGGAGAAGAAGCTAAGCCTCACCATGATGGCCCAGTGGACCCA CTTTGCCCGGACAGGGGACCCCAATGGCAAGGGGCTACCTTTTTGGCCACCGTTCAACCA TTCGGAGCAATATCTGGAAATCAGCCCGGTGCCACAGGTCAGCCAGAAGCTGAGGAAGGC CCGAATGCAGTTCTGGGCAGAGACACTTCCCACCAAGATCCGACAGTGGCAGCAGAAGCA GAAGGGCAGGAAGGCCCAGGAGGAGCTCTGAGGCAGGGCCTGGACCTTCTGGGCTGGAGG CCAACCCTAGGGGTGGTCAGGTCCCAGCAGGGCAGCCTCCTGGCCCCCTGCTAAGAGACT GTAACCCAAACCAGGCTGATGGATGTCACGTCCCTTAAAGCAGCAGCCCCTTCCGGGACT CTGCTTCCTGTCTAGGGGGCCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTCAACAATCACGAGTTCGGCTGGCTCATCCCCAGGGGCTGGGGTATCCTGGATCAGAT GGATCAGATAAATCTGGAGGACATGCTGGCCCCCCTGAAGCCCTTCGTGGGCGGACCGGA TGCGCCTGCTGAGGTGATTCCCACCATCATAGATGAATACCTGGGCAGGCGCTCAGATGG ACAAGCCAAACGAGAAGCCTTCCAGGAATTGATGGGTGATGTCATCATGCACTTTCCTGT GTTGGAGTTTTCTAGAAACCTCCATGCTGCTGGGGCCTCCGTCTTTTTCTACGAGTTCCA GCATCGACCTAGTTCCTTTGCGAAGATCAAGCCGGCCTGGGTGCAGGCTGACCATGGGGC TGAGATGCCCTTCGTGTTTGGGGGTCCTTTCCTCACGGACGAGAGCTCCATGCTGGCCTT TCCAGATGCCACAGAGGAGGAGAAGAAGCTAAGCCTCACCATGATGGCCCAGTGGACCCA CTTTGCCCGGACAGGGGACCCCAATGGCAAGGGGCTACCTTTTTGGCCACCGTTCAACCA TTCGGAGCAATATCTGGAAATCAGCCCGGTGCCACAGGTCAGCCAGAAGCTGAGGAAGGC CCGAATGCAGTTCTGGGCAGAGACACTTCCCACCAAGATCCGACAGTGGCAGCAGAAGCA GAAGGGCAGGAAGGCCCAGGAGGAGCTCTGAGGCAGGGCCTGGACCTTCTGGGCTGGAGG CCAACCCTAGGGGTGGTCAGGTCCCAGCAGGGCAGCCTCCTGGCCCCCTGCTAAGAGACT GTAACCCAAACCAGGCTGATGGATGTCACGTCCCTTAAAGCAGCAGCCCCTTCCGGGACT CTGCTTCCTGTCTAGGGGGCCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 643-772, + strand, RNAz p=0.996465 | |
| 654-772, - strand, RNAz p=0.992452 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 643-772, + strand, RNAz p=0.996465 | |
| 654-772, - strand, RNAz p=0.992452 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 260-416, gnl|bosTau2|chr18 (28214891-28215048) | |
| 260-416, gnl|canFam2|chr5 (85357513-85357358) | |
| 260-416, gnl|danRer3|chr18 (18046050-18045919) | |
| 260-416, gnl|dasNov1|scaffold_120778 (2568-2454) | |
| 260-416, gnl|echTel1|scaffold_307680 (1859-2005) | |
| 260-416, gnl|fr1|chrUn (293823743-293823619) | |
| 260-416, gnl|hg17|chr16 (65563737-65563885) | |
| 260-416, gnl|Hg17|chr16 (65563752-65563909) | |
| 260-416, gnl|loxAfr1|scaffold_26820 (4697-4845) | |
| 260-416, gnl|mm7|chr8 (103691222-103691369) | |
| 260-416, gnl|Mm7|chr8 (103691238-103691393) | |
| 260-416, gnl|oryCun1|scaffold_172480 (55373-55225) | |
| 260-416, gnl|panTro1|chr18 (59818535-59818683) | |
| 260-416, gnl|rheMac2|chr20 (65250827-65250959) | |
| 260-416, gnl|rn3|chr19 (34941513-34941660) | |
| 495-772, gnl|bosTau2|chr18 (28215389-28215667) | |
| 495-772, gnl|canFam2|chr5 (85357006-85356829) | |
| 495-772, gnl|dasNov1|scaffold_178903 (945-1083) | |
| 495-772, gnl|echTel1|scaffold_307680 (2337-2514) | |
| 495-772, gnl|fr1|chrUn (315470598-315470439) | |
| 495-772, gnl|hg17|chr16 (65564256-65564436) | |
| 495-772, gnl|Hg17|chr16 (65564257-65564540) | |
| 495-772, gnl|loxAfr1|scaffold_26820 (5199-5377) | |
| 495-772, gnl|mm7|chr8 (103691704-103691884) | |
| 495-772, gnl|Mm7|chr8 (103691705-103691984) | |
| 495-772, gnl|oryCun1|scaffold_172480 (54863-54683) | |
| 495-772, gnl|panTro1|chr18 (59819059-59819239) | |
| 495-772, gnl|rheMac2|chr20 (65252006-65252190) | |
| 495-772, gnl|rn3|chr19 (34941954-34942133) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 260-416, gnl|bosTau2|chr18 (28214891-28215048) | |
| 260-416, gnl|canFam2|chr5 (85357513-85357358) | |
| 260-416, gnl|danRer3|chr18 (18046050-18045919) | |
| 260-416, gnl|dasNov1|scaffold_120778 (2568-2454) | |
| 260-416, gnl|echTel1|scaffold_307680 (1859-2005) | |
| 260-416, gnl|fr1|chrUn (293823743-293823619) | |
| 260-416, gnl|hg17|chr16 (65563737-65563885) | |
| 260-416, gnl|Hg17|chr16 (65563752-65563909) | |
| 260-416, gnl|loxAfr1|scaffold_26820 (4697-4845) | |
| 260-416, gnl|mm7|chr8 (103691222-103691369) | |
| 260-416, gnl|Mm7|chr8 (103691238-103691393) | |
| 260-416, gnl|oryCun1|scaffold_172480 (55373-55225) | |
| 260-416, gnl|panTro1|chr18 (59818535-59818683) | |
| 260-416, gnl|rheMac2|chr20 (65250827-65250959) | |
| 260-416, gnl|rn3|chr19 (34941513-34941660) | |
| 495-772, gnl|bosTau2|chr18 (28215389-28215667) | |
| 495-772, gnl|canFam2|chr5 (85357006-85356829) | |
| 495-772, gnl|dasNov1|scaffold_178903 (945-1083) | |
| 495-772, gnl|echTel1|scaffold_307680 (2337-2514) | |
| 495-772, gnl|fr1|chrUn (315470598-315470439) | |
| 495-772, gnl|hg17|chr16 (65564256-65564436) | |
| 495-772, gnl|Hg17|chr16 (65564257-65564540) | |
| 495-772, gnl|loxAfr1|scaffold_26820 (5199-5377) | |
| 495-772, gnl|mm7|chr8 (103691704-103691884) | |
| 495-772, gnl|Mm7|chr8 (103691705-103691984) | |
| 495-772, gnl|oryCun1|scaffold_172480 (54863-54683) | |
| 495-772, gnl|panTro1|chr18 (59819059-59819239) | |
| 495-772, gnl|rheMac2|chr20 (65252006-65252190) | |
| 495-772, gnl|rn3|chr19 (34941954-34942133) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) | |
| ill (0.175593) |