Ss1.1-Liv1-LVRM10019G05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTCCCCCGCAAAGCCATGTGGGTGTACCTGGCGGTCCTCGTGGGCCTGTACTACCTCC TGCGCTGGCAGCGGGAGAGGCAGGTGGTGAGCCACCTGAGGGACAAGTATGTCTTCATCA CGGGCTGTGACTCGGGCTTCGGGAACCTGCTGGCCAGGCAGCTGGACCTGCGGGGCTTGA GGGTCCTGGCTGCATGTCTGACGGAGCAGGGGGCCCAGCAGCTGAGGAAGCAGACGTCAG ACAGGCTGGAGACGGTGCTCCTGGACGTGACCAAGACAGAGAGCGTCGCTGCGGCCAAGG AGTGGGTGAAGGAGCGTGTGGGGGACAGAGGACTCTGGGGCCTGGTGAACAATGCTGGCA TCTCCGTAATCTCTGCTCCCAATGAGTGGCTGACCAAACAGGACTTCGTGAAGATATTGG ATGTGAACCTGTTGGGGATGGTCGACGTGACCCTGCAGCTGCTGCCCCTCGTGAGGAAGA CCAGGGGCCGTGTGGTCAACGTCTCCAGTGTCATGGGCCGGGTGTCCCTCTTTGGCGGCG GCTACTGCCTGTCCAAGTACGGTGTTGAGGCCTTCTCAGACTCCCTCAGGAGGGAGCTCT CCTACTTTGGGGTGAAGGTGGCTATGATTGAGCCCGGTTTCTTCAAGACCAATGTAACCA AACCTGAGGCAATTTCTCAGGGCTACAAGACAGCATGGAATCAGGCCAGCCCAGAGATCA AGGATCTCTATGGGGACACATTCCTGGCCTTATGTGAGAAAGCAGTTTGCTCAATGGAGA CAAGTTGCAATCAGGATCTCTCCTTGGTGACTGACTGCATGGAGCACGCCCTGACCTCCT GCCACCCCCGCACGCGATACTCACCTGGCTGGGACGCCAAGCTCTTCTACCTCCCCATGA GCTACTTGCCCACCTTCCTCGTGGATCTCATGATATACTATGGTGCCCCTAGGCCTGCTA AGGCCCTGTAACCCAAACTGGGGTACATGGTAGGGGGAGCTGGGTGTGTTAGGGAGGGGA GGCATCCATGGGAGGGAAATATAGTGGGGAGAGGGCTTCTATGTCACCAGGGACACCCAT CCCACCTCCTCCCCACATCGTCCCCAGGCTTCTCTGGGGACATGACTCAGGACTCTGGGG ATATTAGGATAAAGAAGCAAGTTTTGTGGTGAGGAGCTGGGACCAATAGCTCATGTCTGT GTCTTGTTTCTTACCAGCCTCTCAGGGCCCTGGACCTTAGGCCTTCCTGCCACTCTGAAC AATCCACACTTTGGGGAGGGCGTGAGCAGCTGGGAGGACATCAGCCCCCACCCTCTGTCC CAGTCTGCCTCTTCTGGGTGTGCCCTGGCCCTGGCCGTCTCTCCCTCCTGTGAGCTAGAA ATGGACATGGACGTGAAGGCCCATCTCCCCTGAAGGTTCCTGTGGGCAGGGGTGAGGGTG GAGAGTGGCCACCAGCCTGACACAGCAGCCTGGGTGCCAGCTCAGGAGACCTTGGCTGGA AGGCGGTGTTCTCAGTGGGGGTCCTGAGAGAGGACACAGAAACCAGGTTTTGTTTTGTCT TGAAACCATGCGTTTCCATGGATTAAATTTTCCTTAAAATAAACATTGACAGTTGACCCA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTCCCCCGCAAAGCCATGTGGGTGTACCTGGCGGTCCTCGTGGGCCTGTACTACCTCC TGCGCTGGCAGCGGGAGAGGCAGGTGGTGAGCCACCTGAGGGACAAGTATGTCTTCATCA CGGGCTGTGACTCGGGCTTCGGGAACCTGCTGGCCAGGCAGCTGGACCTGCGGGGCTTGA GGGTCCTGGCTGCATGTCTGACGGAGCAGGGGGCCCAGCAGCTGAGGAAGCAGACGTCAG ACAGGCTGGAGACGGTGCTCCTGGACGTGACCAAGACAGAGAGCGTCGCTGCGGCCAAGG AGTGGGTGAAGGAGCGTGTGGGGGACAGAGGACTCTGGGGCCTGGTGAACAATGCTGGCA TCTCCGTAATCTCTGCTCCCAATGAGTGGCTGACCAAACAGGACTTCGTGAAGATATTGG ATGTGAACCTGTTGGGGATGGTCGACGTGACCCTGCAGCTGCTGCCCCTCGTGAGGAAGA CCAGGGGCCGTGTGGTCAACGTCTCCAGTGTCATGGGCCGGGTGTCCCTCTTTGGCGGCG GCTACTGCCTGTCCAAGTACGGTGTTGAGGCCTTCTCAGACTCCCTCAGGAGGGAGCTCT CCTACTTTGGGGTGAAGGTGGCTATGATTGAGCCCGGTTTCTTCAAGACCAATGTAACCA AACCTGAGGCAATTTCTCAGGGCTACAAGACAGCATGGAATCAGGCCAGCCCAGAGATCA AGGATCTCTATGGGGACACATTCCTGGCCTTATGTGAGAAAGCAGTTTGCTCAATGGAGA CAAGTTGCAATCAGGATCTCTCCTTGGTGACTGACTGCATGGAGCACGCCCTGACCTCCT GCCACCCCCGCACGCGATACTCACCTGGCTGGGACGCCAAGCTCTTCTACCTCCCCATGA GCTACTTGCCCACCTTCCTCGTGGATCTCATGATATACTATGGTGCCCCTAGGCCTGCTA AGGCCCTGTAACCCAAACTGGGGTACATGGTAGGGGGAGCTGGGTGTGTTAGGGAGGGGA GGCATCCATGGGAGGGAAATATAGTGGGGAGAGGGCTTCTATGTCACCAGGGACACCCAT CCCACCTCCTCCCCACATCGTCCCCAGGCTTCTCTGGGGACATGACTCAGGACTCTGGGG ATATTAGGATAAAGAAGCAAGTTTTGTGGTGAGGAGCTGGGACCAATAGCTCATGTCTGT GTCTTGTTTCTTACCAGCCTCTCAGGGCCCTGGACCTTAGGCCTTCCTGCCACTCTGAAC AATCCACACTTTGGGGAGGGCGTGAGCAGCTGGGAGGACATCAGCCCCCACCCTCTGTCC CAGTCTGCCTCTTCTGGGTGTGCCCTGGCCCTGGCCGTCTCTCCCTCCTGTGAGCTAGAA ATGGACATGGACGTGAAGGCCCATCTCCCCTGAAGGTTCCTGTGGGCAGGGGTGAGGGTG GAGAGTGGCCACCAGCCTGACACAGCAGCCTGGGTGCCAGCTCAGGAGACCTTGGCTGGA AGGCGGTGTTCTCAGTGGGGGTCCTGAGAGAGGACACAGAAACCAGGTTTTGTTTTGTCT TGAAACCATGCGTTTCCATGGATTAAATTTTCCTTAAAATAAACATTGACAGTTGACCCA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-331, gnl|bosTau2|chr5 (32782008-32782338) | |
| 1-331, gnl|canFam2|chr10 (4116368-4116639) | |
| 1-331, gnl|danRer3|chrUn (129313265-129312993) | |
| 1-331, gnl|dasNov1|scaffold_15520 (13371-13642) | |
| 1-331, gnl|echTel1|scaffold_194817 (5271-5542) | |
| 1-331, gnl|fr1|chrUn (121752669-121752941) | |
| 1-331, gnl|hg17|chr12 (55637198-55637470) | |
| 1-331, gnl|Hg17|chr12 (55637530-55637200) | |
| 1-331, gnl|loxAfr1|scaffold_1651 (66066-66317) | |
| 1-331, gnl|mm7|chr10 (127351725-127351454) | |
| 1-331, gnl|Mm7|chr10 (127351393-127351722) | |
| 1-331, gnl|monDom2|scaffold_303 (27100-27370) | |
| 1-331, gnl|oryCun1|scaffold_179446 (3625-3354) | |
| 1-331, gnl|panTro1|chr10_random (22583104-22582832) | |
| 1-331, gnl|rheMac2|chr11 (53988763-53989035) | |
| 1-331, gnl|rn3|chr7 (67780436-67780165) | |
| 1-331, gnl|tetNig1|chrUn_random (104658595-104658845) | |
| 1-331, gnl|xenTro1|scaffold_887 (123213-123485) | |
| 186-297, gnl|bosTau2|chr3 (13486485-13486596) | |
| 186-297, gnl|Hg17|chr12 (55637345-55637234) | |
| 186-297, gnl|Mm7|chr10 (127325840-127325951) | |
| 587-748, gnl|bosTau2|chr5 (32785481-32785642) | |
| 587-748, gnl|Hg17|chr12 (55633044-55632883) | |
| 587-748, gnl|Mm7|chr10 (127360879-127361040) | |
| 758-1607, gnl|bosTau2|chr5 (32786219-32787066) | |
| 758-1607, gnl|Hg17|chr12 (55632293-55631443) | |
| 758-1607, gnl|Mm7|chr10 (127361512-127362303) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-331, gnl|bosTau2|chr5 (32782008-32782338) | |
| 1-331, gnl|canFam2|chr10 (4116368-4116639) | |
| 1-331, gnl|danRer3|chrUn (129313265-129312993) | |
| 1-331, gnl|dasNov1|scaffold_15520 (13371-13642) | |
| 1-331, gnl|echTel1|scaffold_194817 (5271-5542) | |
| 1-331, gnl|fr1|chrUn (121752669-121752941) | |
| 1-331, gnl|hg17|chr12 (55637198-55637470) | |
| 1-331, gnl|Hg17|chr12 (55637530-55637200) | |
| 1-331, gnl|loxAfr1|scaffold_1651 (66066-66317) | |
| 1-331, gnl|mm7|chr10 (127351725-127351454) | |
| 1-331, gnl|Mm7|chr10 (127351393-127351722) | |
| 1-331, gnl|monDom2|scaffold_303 (27100-27370) | |
| 1-331, gnl|oryCun1|scaffold_179446 (3625-3354) | |
| 1-331, gnl|panTro1|chr10_random (22583104-22582832) | |
| 1-331, gnl|rheMac2|chr11 (53988763-53989035) | |
| 1-331, gnl|rn3|chr7 (67780436-67780165) | |
| 1-331, gnl|tetNig1|chrUn_random (104658595-104658845) | |
| 1-331, gnl|xenTro1|scaffold_887 (123213-123485) | |
| 186-297, gnl|bosTau2|chr3 (13486485-13486596) | |
| 186-297, gnl|Hg17|chr12 (55637345-55637234) | |
| 186-297, gnl|Mm7|chr10 (127325840-127325951) | |
| 587-748, gnl|bosTau2|chr5 (32785481-32785642) | |
| 587-748, gnl|Hg17|chr12 (55633044-55632883) | |
| 587-748, gnl|Mm7|chr10 (127360879-127361040) | |
| 758-1607, gnl|bosTau2|chr5 (32786219-32787066) | |
| 758-1607, gnl|Hg17|chr12 (55632293-55631443) | |
| 758-1607, gnl|Mm7|chr10 (127361512-127362303) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (1.83374) | |
| cga (0.279096) | |
| cly (0.120642) |