Ss1.1-Liv1-LVRM10022F03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTAGATAGATCTTCTAGGTCCTGGTCTGTAGACACCTCTTACTTCAACTCCCTAAGTAG TTTTAGTCCTTCTTTGTAATATAGGGTAGTGGCTTCTGGATGAGATGTTGGCTGTTGCTT TTTTCATCTTGTCTTTGATGACTTGTCAGCCTGGGGTAACCATACAGGAGAAGGTGAACC GGAGAGTCAGTCGGGCTGTTCTGAGCTCCACCCCCACAGCCGTTTCCTGCCAGCTAAGCA ACTGGGCAGAGTGGACAGAATGCTTCCCATGCCAGGACAAAAAGTACAGATACCGGAGCC TCCTGCAGCCAAACAAGTTTGGGGGAACCATCTGCAGTGGGAACGTCTGGGACCAAGCCA GCTGTCACAGTCCCACAGAGTGTCTAAGGCAAGCACAGTGTGGACAGGATTTCCAGTGTA AGGAGACAGGGCGCTGCCTGAAACGCCACCTCGTGTGTAACGGAGACAGGGACTGCCTGG ATGGCTCTGACGAGGATGACTGTGAAGATGTCAGGATCTTCGAAGATGACTGCAGCCAGT ATGACCCGATTCCAGGATCGGAGAGGGCGACCTTGGGGTACAATATTCTGACCCAGGAAG AAACGCAGAGTGTGTATGATGCCAGGTATTATGGGGGCCAGTGTGAGACTGTCTACAACG GGGAGTGGAGGGAGCTTCGGTATGACTCTGCCTGTGAGCGTCTCTACTATGGAGATGATG AGAAGTACTTCCGGAAACCCTACAATTTCCTGAAGTACCACTTCGAAGCCCTGGCAGACA GTAAATTTTCCTCAGAGTCATACGATGATGCAAATGACCTTCTTAAAAAAGTAAAAAATG AGAAGTCTGTGTCAGCTGGAGTGACCGTTGGTATAGGCCCTACAGGTAGCCCATTTACAG CAAATGTGGGCTTATCAGGGTCACGAGAGTCTGCGTTCTTGAACAAGCTAAGCAAGTATA ACGAGAAGAAATACAGCTTCATCAGGATTTTCACAAAGGTACAGACTGCTAGTTTTAAGA TGAGGAGGGACAATATTATGCTGGATGAAGTTATGCTGCAGTCATTAATGGAGCTTCCGG AGCAGTACAATTACGGCATGTACGCCAAGTTCATTGATGACTACGGCACCCATTATATCA CGTCTGGATCGATGGGTGGTGTTTATGAATATATCCTGGTGCTTAACAAAGAAAATATGA CAAAATCTGGTGTTACCAGCGATGATGTCACATCATGCTTTGGAGGGTCTTTTGGCATCG ACTATGACTATACAGATAACTTACAAATTACAGGAAGTTTATCAGGAAAACATTGTAAAA AACTTGGAGGTGGCCACAGAGAAGACGAAGAGAGCAACACGGCTGTGGAAGACATCATTT CTCGGGTGCGAGGTGGCAGTTCTGGCTGGGGCGGTGGCTTGACGCAAAACGGCAGCATCA TTACATACCGTGCCTGGGGGAGGTCATTAAAGTATAATCCTGCTGTTATTGATTTTGAGA TGAAGCCCATTTACGAGATACTGCGCCACACAAACCTGGGGCCCCTGGAGGCCAAGCGCC AGAACCTGCGACGGGCCTTGGATCAGTACCTGATGGAATTCAACGCCTGCCGCTGTGGGC CCTGCTTCAACAATGGCGAGCCCATCCTCGTGGGTACCAGCTGCCGGTGTCAGTGCCCTG TGGGTTACCAGGGCCTTGCCTGTGAGCAAATGAAGTCAGAGGGAGCCAAGGCTGATGGTC GCTGGAGCTGCTGGAGCTCCTGGTCTGCTTGCAGATTGGGCACCCAGGAAAGGAGGAGAG AGTGTAACAACCCTGCACCCCAGAATGGAGGTGCCTCGTGTTCAGGCCACAAAGTGCAGA CCCAGGCATGCTGAGGGCCTCTGGGCACAGGCTGGAACCCACCCAGCAGACGTCACCGCC GGCACCGACCACTGGATACAGACCTCACTCCGCTGAGAGAAGATGCCAATCAACGTGGAC TTTTTCTCTGTCCTGCCAGCTTCCAGGCTGAAGACTGGGGGTTGAGAGTTAACTAGTGCT AACTGCTCGCGACACTTTGGATCATTAAAGAAAAGAAAAGAAAAGAGAAAAAGGAAAAAT CTCAGTCCATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTAGATAGATCTTCTAGGTCCTGGTCTGTAGACACCTCTTACTTCAACTCCCTAAGTAG TTTTAGTCCTTCTTTGTAATATAGGGTAGTGGCTTCTGGATGAGATGTTGGCTGTTGCTT TTTTCATCTTGTCTTTGATGACTTGTCAGCCTGGGGTAACCATACAGGAGAAGGTGAACC GGAGAGTCAGTCGGGCTGTTCTGAGCTCCACCCCCACAGCCGTTTCCTGCCAGCTAAGCA ACTGGGCAGAGTGGACAGAATGCTTCCCATGCCAGGACAAAAAGTACAGATACCGGAGCC TCCTGCAGCCAAACAAGTTTGGGGGAACCATCTGCAGTGGGAACGTCTGGGACCAAGCCA GCTGTCACAGTCCCACAGAGTGTCTAAGGCAAGCACAGTGTGGACAGGATTTCCAGTGTA AGGAGACAGGGCGCTGCCTGAAACGCCACCTCGTGTGTAACGGAGACAGGGACTGCCTGG ATGGCTCTGACGAGGATGACTGTGAAGATGTCAGGATCTTCGAAGATGACTGCAGCCAGT ATGACCCGATTCCAGGATCGGAGAGGGCGACCTTGGGGTACAATATTCTGACCCAGGAAG AAACGCAGAGTGTGTATGATGCCAGGTATTATGGGGGCCAGTGTGAGACTGTCTACAACG GGGAGTGGAGGGAGCTTCGGTATGACTCTGCCTGTGAGCGTCTCTACTATGGAGATGATG AGAAGTACTTCCGGAAACCCTACAATTTCCTGAAGTACCACTTCGAAGCCCTGGCAGACA GTAAATTTTCCTCAGAGTCATACGATGATGCAAATGACCTTCTTAAAAAAGTAAAAAATG AGAAGTCTGTGTCAGCTGGAGTGACCGTTGGTATAGGCCCTACAGGTAGCCCATTTACAG CAAATGTGGGCTTATCAGGGTCACGAGAGTCTGCGTTCTTGAACAAGCTAAGCAAGTATA ACGAGAAGAAATACAGCTTCATCAGGATTTTCACAAAGGTACAGACTGCTAGTTTTAAGA TGAGGAGGGACAATATTATGCTGGATGAAGTTATGCTGCAGTCATTAATGGAGCTTCCGG AGCAGTACAATTACGGCATGTACGCCAAGTTCATTGATGACTACGGCACCCATTATATCA CGTCTGGATCGATGGGTGGTGTTTATGAATATATCCTGGTGCTTAACAAAGAAAATATGA CAAAATCTGGTGTTACCAGCGATGATGTCACATCATGCTTTGGAGGGTCTTTTGGCATCG ACTATGACTATACAGATAACTTACAAATTACAGGAAGTTTATCAGGAAAACATTGTAAAA AACTTGGAGGTGGCCACAGAGAAGACGAAGAGAGCAACACGGCTGTGGAAGACATCATTT CTCGGGTGCGAGGTGGCAGTTCTGGCTGGGGCGGTGGCTTGACGCAAAACGGCAGCATCA TTACATACCGTGCCTGGGGGAGGTCATTAAAGTATAATCCTGCTGTTATTGATTTTGAGA TGAAGCCCATTTACGAGATACTGCGCCACACAAACCTGGGGCCCCTGGAGGCCAAGCGCC AGAACCTGCGACGGGCCTTGGATCAGTACCTGATGGAATTCAACGCCTGCCGCTGTGGGC CCTGCTTCAACAATGGCGAGCCCATCCTCGTGGGTACCAGCTGCCGGTGTCAGTGCCCTG TGGGTTACCAGGGCCTTGCCTGTGAGCAAATGAAGTCAGAGGGAGCCAAGGCTGATGGTC GCTGGAGCTGCTGGAGCTCCTGGTCTGCTTGCAGATTGGGCACCCAGGAAAGGAGGAGAG AGTGTAACAACCCTGCACCCCAGAATGGAGGTGCCTCGTGTTCAGGCCACAAAGTGCAGA CCCAGGCATGCTGAGGGCCTCTGGGCACAGGCTGGAACCCACCCAGCAGACGTCACCGCC GGCACCGACCACTGGATACAGACCTCACTCCGCTGAGAGAAGATGCCAATCAACGTGGAC TTTTTCTCTGTCCTGCCAGCTTCCAGGCTGAAGACTGGGGGTTGAGAGTTAACTAGTGCT AACTGCTCGCGACACTTTGGATCATTAAAGAAAAGAAAAGAAAAGAGAAAAAGGAAAAAT CTCAGTCCATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1046-1840, + strand, RNAz p=0.939626 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1046-1840, + strand, RNAz p=0.939626 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 16-187, gnl|bosTau2|chr3 (59035752-59035924) | |
| 16-187, gnl|canFam2|chr5 (55653866-55653433) | |
| 16-187, gnl|dasNov1|scaffold_166316 (468-908) | |
| 16-187, gnl|hg17|chr1 (57032204-57032681) | |
| 16-187, gnl|Hg17|chr1 (57032494-57032678) | |
| 16-187, gnl|loxAfr1|scaffold_56106 (16103-15654) | |
| 16-187, gnl|mm7|chr4 (104253129-104252712) | |
| 16-187, gnl|Mm7|chr4 (104252891-104252713) | |
| 16-187, gnl|monDom2|scaffold_40 (18822837-18822368) | |
| 16-187, gnl|oryCun1|scaffold_204024 (67599-68041) | |
| 16-187, gnl|panTro1|chr1 (55373041-55373518) | |
| 16-187, gnl|rheMac2|chr1 (59722238-59722715) | |
| 16-187, gnl|rn3|chr5 (125836569-125836153) | |
| 283-430, gnl|bosTau2|chr3 (59060533-59060680) | |
| 283-430, gnl|canFam2|chr5 (55630546-55630384) | |
| 283-430, gnl|dasNov1|scaffold_3076 (9785-9947) | |
| 283-430, gnl|echTel1|scaffold_204300 (7331-7493) | |
| 283-430, gnl|galGal2|chr8 (26058576-26058737) | |
| 283-430, gnl|hg17|chr1 (57052634-57052796) | |
| 283-430, gnl|Hg17|chr1 (57052641-57052788) | |
| 283-430, gnl|mm7|chr4 (104239191-104239028) | |
| 283-430, gnl|Mm7|chr4 (104239181-104239034) | |
| 283-430, gnl|monDom2|scaffold_40 (18796898-18796736) | |
| 283-430, gnl|oryCun1|scaffold_204024 (83800-83962) | |
| 283-430, gnl|panTro1|chr1 (55394611-55394773) | |
| 283-430, gnl|rheMac2|chr1 (59742555-59742717) | |
| 283-430, gnl|rn3|chr5 (125819823-125819660) | |
| 967-1211, gnl|bosTau2|chr3 (59104771-59105015) | |
| 967-1211, gnl|Hg17|chr1 (57063619-57063863) | |
| 967-1211, gnl|Mm7|chr4 (104222576-104222332) | |
| 1358-1499, gnl|bosTau2|chr3 (59136838-59136979) | |
| 1358-1499, gnl|canFam2|chr5 (55597927-55597748) | |
| 1358-1499, gnl|dasNov1|scaffold_3076 (38108-38287) | |
| 1358-1499, gnl|echTel1|scaffold_220919 (2988-2808) | |
| 1358-1499, gnl|galGal2|chr8 (26068283-26068460) | |
| 1358-1499, gnl|hg17|chr1 (57085632-57085812) | |
| 1358-1499, gnl|Hg17|chr1 (57085666-57085807) | |
| 1358-1499, gnl|loxAfr1|scaffold_11134 (62739-62559) | |
| 1358-1499, gnl|mm7|chr4 (104203281-104203105) | |
| 1358-1499, gnl|Mm7|chr4 (104203249-104203108) | |
| 1358-1499, gnl|monDom2|scaffold_40 (18752105-18751926) | |
| 1358-1499, gnl|oryCun1|scaffold_198705 (3950-3771) | |
| 1358-1499, gnl|panTro1|chr1 (55427746-55427926) | |
| 1358-1499, gnl|rheMac2|chr1 (59775371-59775551) | |
| 1358-1499, gnl|rn3|chr5 (125792841-125792665) | |
| 1358-1499, gnl|tetNig1|chr15 (2762295-2762470) | |
| 1722-1995, gnl|bosTau2|chr3 (59145224-59145497) | |
| 1722-1995, gnl|Hg17|chr1 (57095258-57095530) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-187, gnl|bosTau2|chr3 (59035752-59035924) | |
| 16-187, gnl|canFam2|chr5 (55653866-55653433) | |
| 16-187, gnl|dasNov1|scaffold_166316 (468-908) | |
| 16-187, gnl|hg17|chr1 (57032204-57032681) | |
| 16-187, gnl|Hg17|chr1 (57032494-57032678) | |
| 16-187, gnl|loxAfr1|scaffold_56106 (16103-15654) | |
| 16-187, gnl|mm7|chr4 (104253129-104252712) | |
| 16-187, gnl|Mm7|chr4 (104252891-104252713) | |
| 16-187, gnl|monDom2|scaffold_40 (18822837-18822368) | |
| 16-187, gnl|oryCun1|scaffold_204024 (67599-68041) | |
| 16-187, gnl|panTro1|chr1 (55373041-55373518) | |
| 16-187, gnl|rheMac2|chr1 (59722238-59722715) | |
| 16-187, gnl|rn3|chr5 (125836569-125836153) | |
| 283-430, gnl|bosTau2|chr3 (59060533-59060680) | |
| 283-430, gnl|canFam2|chr5 (55630546-55630384) | |
| 283-430, gnl|dasNov1|scaffold_3076 (9785-9947) | |
| 283-430, gnl|echTel1|scaffold_204300 (7331-7493) | |
| 283-430, gnl|galGal2|chr8 (26058576-26058737) | |
| 283-430, gnl|hg17|chr1 (57052634-57052796) | |
| 283-430, gnl|Hg17|chr1 (57052641-57052788) | |
| 283-430, gnl|mm7|chr4 (104239191-104239028) | |
| 283-430, gnl|Mm7|chr4 (104239181-104239034) | |
| 283-430, gnl|monDom2|scaffold_40 (18796898-18796736) | |
| 283-430, gnl|oryCun1|scaffold_204024 (83800-83962) | |
| 283-430, gnl|panTro1|chr1 (55394611-55394773) | |
| 283-430, gnl|rheMac2|chr1 (59742555-59742717) | |
| 283-430, gnl|rn3|chr5 (125819823-125819660) | |
| 967-1211, gnl|bosTau2|chr3 (59104771-59105015) | |
| 967-1211, gnl|Hg17|chr1 (57063619-57063863) | |
| 967-1211, gnl|Mm7|chr4 (104222576-104222332) | |
| 1358-1499, gnl|bosTau2|chr3 (59136838-59136979) | |
| 1358-1499, gnl|canFam2|chr5 (55597927-55597748) | |
| 1358-1499, gnl|dasNov1|scaffold_3076 (38108-38287) | |
| 1358-1499, gnl|echTel1|scaffold_220919 (2988-2808) | |
| 1358-1499, gnl|galGal2|chr8 (26068283-26068460) | |
| 1358-1499, gnl|hg17|chr1 (57085632-57085812) | |
| 1358-1499, gnl|Hg17|chr1 (57085666-57085807) | |
| 1358-1499, gnl|loxAfr1|scaffold_11134 (62739-62559) | |
| 1358-1499, gnl|mm7|chr4 (104203281-104203105) | |
| 1358-1499, gnl|Mm7|chr4 (104203249-104203108) | |
| 1358-1499, gnl|monDom2|scaffold_40 (18752105-18751926) | |
| 1358-1499, gnl|oryCun1|scaffold_198705 (3950-3771) | |
| 1358-1499, gnl|panTro1|chr1 (55427746-55427926) | |
| 1358-1499, gnl|rheMac2|chr1 (59775371-59775551) | |
| 1358-1499, gnl|rn3|chr5 (125792841-125792665) | |
| 1358-1499, gnl|tetNig1|chr15 (2762295-2762470) | |
| 1722-1995, gnl|bosTau2|chr3 (59145224-59145497) | |
| 1722-1995, gnl|Hg17|chr1 (57095258-57095530) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.902935) | |
| cli (0.305623) | |
| eli (0.151814) |