Non-Coding RNA Search

Ss1.1-Liv1-LVRM10028C06.5

Sequence:


               
               ACATTGTAGCAAAATGGCGACTGTCATTCACAACCCCCTGAAAGCGCTCGGGGACCAGTT
CTACAAGGAAGCCATTGAGCACTGCCGCAGTTATAACTCGCGCCTGTGTGCAGAGCGCAG
CGTGCGGCTCCCTTTCCTGGACTCACAGACTGGGGTGGCCCAGAACAACTGCTACATCTG
GATGGAGAAGAGGCACCGAGGCCCAGGCCTCGCCCCTGGCCAGCTGTACACATACCCTGC
CCGCTGCTGGCGTAAGAAGAGACGATTGCACCCGCCTGAGGATCCGAAGCTGCGGCTGCT
GGAAATAAAACCTGAAGTGGAACTACCCCTGAAGAAGGATGGGTTCACTTCAGAGAGCAC
CACCCTGGAAGCCTTGCTCCGCGGTGAGGGCGTTGAGAAGAAGGTGGACACCAGGGAGGA
AGAAAGCATCCAGGAAATACAGAGGGTTTTGGAAAATGATGAAAATGTAGAAGAAGGAAA
TGAAGAAGAGGATTTAGAAGAGGATATTCCCAAGCGGAAGAATCGGACCAGAGGACGAGC
CCGTGGCTCTGCAGGTGGCAGAAGGAGGCACGACGCCGCCTCTCAAGAAGACCACGACNA
ACCTTACGTCTGTGACATCTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTGTAGCAAAATGGCGACTGTCATTCACAACCCCCTGAAAGCGCTCGGGGACCAGTT
CTACAAGGAAGCCATTGAGCACTGCCGCAGTTATAACTCGCGCCTGTGTGCAGAGCGCAG
CGTGCGGCTCCCTTTCCTGGACTCACAGACTGGGGTGGCCCAGAACAACTGCTACATCTG
GATGGAGAAGAGGCACCGAGGCCCAGGCCTCGCCCCTGGCCAGCTGTACACATACCCTGC
CCGCTGCTGGCGTAAGAAGAGACGATTGCACCCGCCTGAGGATCCGAAGCTGCGGCTGCT
GGAAATAAAACCTGAAGTGGAACTACCCCTGAAGAAGGATGGGTTCACTTCAGAGAGCAC
CACCCTGGAAGCCTTGCTCCGCGGTGAGGGCGTTGAGAAGAAGGTGGACACCAGGGAGGA
AGAAAGCATCCAGGAAATACAGAGGGTTTTGGAAAATGATGAAAATGTAGAAGAAGGAAA
TGAAGAAGAGGATTTAGAAGAGGATATTCCCAAGCGGAAGAATCGGACCAGAGGACGAGC
CCGTGGCTCTGCAGGTGGCAGAAGGAGGCACGACGCCGCCTCTCAAGAAGACCACGACNA
ACCTTACGTCTGTGACATCTGTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10436450|dbj|BAB14838.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10436450|dbj|BAB14838.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               35-214, gnl|bosTau2|chr18 (43827062-43827240)
               

               
               35-214, gnl|Hg17|chr19 (43405197-43405020)
               

               
               35-214, gnl|Mm7|chr19 (5801977-5801804)
               


               
               46-207, gnl|bosTau2|chr10 (51219445-51219284)
               

               
               46-207, gnl|Hg17|chr14 (72308354-72308193)
               

               
               46-207, gnl|Mm7|chr12 (81366638-81366477)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-214, gnl|bosTau2|chr18 (43827062-43827240)
               

               
               35-214, gnl|Hg17|chr19 (43405197-43405020)
               

               
               35-214, gnl|Mm7|chr19 (5801977-5801804)
               


               
               46-207, gnl|bosTau2|chr10 (51219445-51219284)
               

               
               46-207, gnl|Hg17|chr14 (72308354-72308193)
               

               
               46-207, gnl|Mm7|chr12 (81366638-81366477)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nbm (0.0993246)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.0993246)

	35-214, gnl\|bosTau2\|chr18 (43827062-43827240)
	35-214, gnl\|Hg17\|chr19 (43405197-43405020)
	35-214, gnl\|Mm7\|chr19 (5801977-5801804)

	46-207, gnl\|bosTau2\|chr10 (51219445-51219284)
	46-207, gnl\|Hg17\|chr14 (72308354-72308193)
	46-207, gnl\|Mm7\|chr12 (81366638-81366477)