Non-Coding RNA Search

Ss1.1-Liv1-LVRM10029B08.5.5

Sequence:


               
               AAAAAAAAAAAACTACTGGAGCATTGCGGGCAGGCAGCGGCTCTGGGTCCACTCAGCGCA
TCCCGCTCTGCGAGGCAGACATGAGGGCGGAGGGAATGTCCCTCTTCCTGGCTCTGGGGC
TCCTGGTGGCTGGGCTCTGCTCCAGGGTCCACTGCGTCCCAGCGGATGACCTTGCCTCAA
AGACTGTGACCCTGAAGGGCCAGATCAAGAAGCTGCCAGCGCACAACACCGCCGTCGTCT
CCAGCAACACCGACTTCGCCTTCAGCCTCTACAAGCAGCTGGCTCTGGCCGAACGCAGAG
AAAATGTCATCTTCTCCCCGCTGAGCGTCTCCATAGCCTTGGCCTTCCTGTCTCTGGGGG
CCCGAGGCCCCACCCTGATAGAGCTCCTGGAAGGCCTCAAGTTCAACCTCACAAAGACCC
CCGAGGCAGAAATCCACCAGGGCTTCCAGCACCTCCTGCAGGCCCTCAGCCAACCCAGCA
ACCTGCTGCAGCTGAACGTGGGCAACGCCATGTTCGTGGATGAGCGGCTGAAGCTGCTGG
ACAAGTTCGTCCAAGATGCCCGTGAGCTGTACTTCTCCGAGGTCTTCTCCATCAGCTTTA
AGGACTCCGATGCTGCCATAGAGTTCATCAACAACTATGTAAAGAATAAGACCAAGGGGA
AAATTGTGGATTTGTTCAAACAACTTTCCCCGGATACCGTCCTGGTTCTGGTGAACTGCA
TCTACTTTAAAGCCAAGTGGAAGATGCCCTTCAATCCCAACTTTACCACGGGGGCAGATT
TCCACGTGAGCAAGAACAGGACGGTGAGGGTGCCCATGATGGGCATTACGGGCCGCACCG
TGCCTTACTTCCGGGACCAGGAGCTGGCCTGCACGGTGGTGGAGCTCCCGTACACCAGCA
ACGACAGCGCGCTCTTCATCCTCCCTGACGACGGCAGGATGGAGGACGTGGAAGCCAAGC
TGCTCCCGGAGACACTGAGGAGGTGGAGAGACTCCCTGCAGCCCAGACGGATAACTGCCC
TCCACCTGCCACGGTTTTCCGTCTCCGGGGACTATAAGCTGCATGACATCCTTCCCCACC
TGGGCATTAAGAAAGTCTTCAGCCACCAGGCTGACCTGTCAGGAATCACAGATCAAGCAC
GCCTGGAAGTTTCCCAGGTGGTCCACAGAGCTGTGCTTGACGTGGACGAGGAGGGCACGG
AAGGAGCTGCTGCCACGGGAATCAGCATACAACCCACATCCCTAGTGTTTTTGACGGTGC
ATTTCAACAGGCCCTTTCTCTTTTTCATAATTCACAAAGACACCCAGAGCATCCTCTTTT
CAGGCAAAGTCACTAACCCCTCCCCTCCAAGTGCCAGGTCTCCTCATTAAGGAGCTGGGT
GCCCTGGTCCCTGGGGCATCCTGGCACTGCCTGCTCACCCTTGGGAAGGTGACAGTCACC
CTCTGGAGGCTCCACATGCCCAGGGAGCCTGCGCCCTGCTCCGCGGAGGCTCTGAGACCT
CGCACAGCAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAACTACTGGAGCATTGCGGGCAGGCAGCGGCTCTGGGTCCACTCAGCGCA
TCCCGCTCTGCGAGGCAGACATGAGGGCGGAGGGAATGTCCCTCTTCCTGGCTCTGGGGC
TCCTGGTGGCTGGGCTCTGCTCCAGGGTCCACTGCGTCCCAGCGGATGACCTTGCCTCAA
AGACTGTGACCCTGAAGGGCCAGATCAAGAAGCTGCCAGCGCACAACACCGCCGTCGTCT
CCAGCAACACCGACTTCGCCTTCAGCCTCTACAAGCAGCTGGCTCTGGCCGAACGCAGAG
AAAATGTCATCTTCTCCCCGCTGAGCGTCTCCATAGCCTTGGCCTTCCTGTCTCTGGGGG
CCCGAGGCCCCACCCTGATAGAGCTCCTGGAAGGCCTCAAGTTCAACCTCACAAAGACCC
CCGAGGCAGAAATCCACCAGGGCTTCCAGCACCTCCTGCAGGCCCTCAGCCAACCCAGCA
ACCTGCTGCAGCTGAACGTGGGCAACGCCATGTTCGTGGATGAGCGGCTGAAGCTGCTGG
ACAAGTTCGTCCAAGATGCCCGTGAGCTGTACTTCTCCGAGGTCTTCTCCATCAGCTTTA
AGGACTCCGATGCTGCCATAGAGTTCATCAACAACTATGTAAAGAATAAGACCAAGGGGA
AAATTGTGGATTTGTTCAAACAACTTTCCCCGGATACCGTCCTGGTTCTGGTGAACTGCA
TCTACTTTAAAGCCAAGTGGAAGATGCCCTTCAATCCCAACTTTACCACGGGGGCAGATT
TCCACGTGAGCAAGAACAGGACGGTGAGGGTGCCCATGATGGGCATTACGGGCCGCACCG
TGCCTTACTTCCGGGACCAGGAGCTGGCCTGCACGGTGGTGGAGCTCCCGTACACCAGCA
ACGACAGCGCGCTCTTCATCCTCCCTGACGACGGCAGGATGGAGGACGTGGAAGCCAAGC
TGCTCCCGGAGACACTGAGGAGGTGGAGAGACTCCCTGCAGCCCAGACGGATAACTGCCC
TCCACCTGCCACGGTTTTCCGTCTCCGGGGACTATAAGCTGCATGACATCCTTCCCCACC
TGGGCATTAAGAAAGTCTTCAGCCACCAGGCTGACCTGTCAGGAATCACAGATCAAGCAC
GCCTGGAAGTTTCCCAGGTGGTCCACAGAGCTGTGCTTGACGTGGACGAGGAGGGCACGG
AAGGAGCTGCTGCCACGGGAATCAGCATACAACCCACATCCCTAGTGTTTTTGACGGTGC
ATTTCAACAGGCCCTTTCTCTTTTTCATAATTCACAAAGACACCCAGAGCATCCTCTTTT
CAGGCAAAGTCACTAACCCCTCCCCTCCAAGTGCCAGGTCTCCTCATTAAGGAGCTGGGT
GCCCTGGTCCCTGGGGCATCCTGGCACTGCCTGCTCACCCTTGGGAAGGTGACAGTCACC
CTCTGGAGGCTCCACATGCCCAGGGAGCCTGCGCCCTGCTCCGCGGAGGCTCTGAGACCT
CGCACAGCAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523270|ref|NP_998952.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523270|ref|NP_998952.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               304-423, - strand, RNAz p=0.524569

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               304-423, - strand, RNAz p=0.524569

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               65-732, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               65-732, gnl|Hg17|chr14 (94150510-94151174)
               

               
               65-732, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1155-1512, gnl|bosTau2|chr21 (40671456-40671094)
               

               
               1155-1512, gnl|Hg17|chr14 (94159698-94160128)
               

               
               1155-1512, gnl|Mm7|chr12 (101907731-101908132)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-732, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               65-732, gnl|Hg17|chr14 (94150510-94151174)
               

               
               65-732, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1155-1512, gnl|bosTau2|chr21 (40671456-40671094)
               

               
               1155-1512, gnl|Hg17|chr14 (94159698-94160128)
               

               
               1155-1512, gnl|Mm7|chr12 (101907731-101908132)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cli (1.06968)
               

               
               cag (0.302389)
               

               
               lun (0.150489)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (1.06968)
               

               
               cag (0.302389)
               

               
               lun (0.150489)

	65-732, gnl\|bosTau2\|chr21 (40705409-40704769)
	65-732, gnl\|Hg17\|chr14 (94150510-94151174)
	65-732, gnl\|Mm7\|chr12 (101902962-101903629)

	1155-1512, gnl\|bosTau2\|chr21 (40671456-40671094)
	1155-1512, gnl\|Hg17\|chr14 (94159698-94160128)
	1155-1512, gnl\|Mm7\|chr12 (101907731-101908132)