Ss1.1-Liv1-LVRM10029C10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTAACTGGACCCGCGTGACAGTTCCCTGCACGCGGTGGCGGTAGCCACCGAAGGCGCA CGGGTGTCGGGCGGAACGCCGGAGACGGGATCGACAAAACCATGGGAGACGCTCTGAGCC CTGAAGAGAAGCTGCACCTTATCACCCGGAACCTACAGGAGGTTCTTGGGGAAGAAAAGC TGAAGGAGATCCTAAAGGAGCGGGAACTTAAAGTTTACTGGGGGACGGCAACCACAGGCA AGCCCCATGTGGCTTACTTCGTGCCTATGTCCAAAATCGCGGACTTCCTAAAAGCAGGAT GTGAGGTAACAATTCTATTTGCGGATCTTCACGCATACCTGGATAACATGAAAGCCCCAT GGGAACTTCTAGAACTCCGAACCAGCTACTATGAGAATGTGATCAAGGCGATGCTAGAGA GCATTGGGGTGCCCTTGGAGAAGCTCAAGTTCATCAAAGGCACTGATTACCAGCTCAGCA AAGAGTACACGCTAGATGTGTATCGCCTCTCCTCCGTGGTCACTCAGCACGACGCCAAGA AGGCTGGAGCGGAGGTGGTCAAGCAGGTGGAGCACCCCCTGCTGAGCGGCCTGCTGTACC CAGGGCTGCAGGCCTTGGATGAAGAATATTTGAAAGTGGATGCCCAATTTGGAGGCGTTG ATCAGAGAAAGATTTTCACCTTTGCAGAGAAGTACCTACCTGCGCTTGGCTACTCAAAAC GGGTCCATCTGATGAATCCTATGGTTCCTGGATTAACTGGCAGCAAAATGAGCTCTTCAG AAGAGGAGTCCAAGATTGATCTCCTTGATCGGAAAGAGGATGTGAAGAAAAAACTGAAGA AGGCCTTCTGTGAGCCAGGGAACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTAACTGGACCCGCGTGACAGTTCCCTGCACGCGGTGGCGGTAGCCACCGAAGGCGCA CGGGTGTCGGGCGGAACGCCGGAGACGGGATCGACAAAACCATGGGAGACGCTCTGAGCC CTGAAGAGAAGCTGCACCTTATCACCCGGAACCTACAGGAGGTTCTTGGGGAAGAAAAGC TGAAGGAGATCCTAAAGGAGCGGGAACTTAAAGTTTACTGGGGGACGGCAACCACAGGCA AGCCCCATGTGGCTTACTTCGTGCCTATGTCCAAAATCGCGGACTTCCTAAAAGCAGGAT GTGAGGTAACAATTCTATTTGCGGATCTTCACGCATACCTGGATAACATGAAAGCCCCAT GGGAACTTCTAGAACTCCGAACCAGCTACTATGAGAATGTGATCAAGGCGATGCTAGAGA GCATTGGGGTGCCCTTGGAGAAGCTCAAGTTCATCAAAGGCACTGATTACCAGCTCAGCA AAGAGTACACGCTAGATGTGTATCGCCTCTCCTCCGTGGTCACTCAGCACGACGCCAAGA AGGCTGGAGCGGAGGTGGTCAAGCAGGTGGAGCACCCCCTGCTGAGCGGCCTGCTGTACC CAGGGCTGCAGGCCTTGGATGAAGAATATTTGAAAGTGGATGCCCAATTTGGAGGCGTTG ATCAGAGAAAGATTTTCACCTTTGCAGAGAAGTACCTACCTGCGCTTGGCTACTCAAAAC GGGTCCATCTGATGAATCCTATGGTTCCTGGATTAACTGGCAGCAAAATGAGCTCTTCAG AAGAGGAGTCCAAGATTGATCTCCTTGATCGGAAAGAGGATGTGAAGAAAAAACTGAAGA AGGCCTTCTGTGAGCCAGGGAACG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-177, gnl|bosTau2|chr2 (74092100-74091913) | |
| 1-177, gnl|Hg17|chr1 (32952042-32951862) | |
| 1-177, gnl|Mm7|chr4 (128634560-128634744) | |
| 304-481, gnl|bosTau2|chr2 (74087038-74086861) | |
| 304-481, gnl|canFam2|chr2 (71429773-71429578) | |
| 304-481, gnl|danRer3|chr19 (45588668-45588860) | |
| 304-481, gnl|dasNov1|scaffold_27281 (12643-12832) | |
| 304-481, gnl|echTel1|scaffold_304001 (27072-27257) | |
| 304-481, gnl|fr1|chrUn (1034722-1034534) | |
| 304-481, gnl|galGal2|chr23 (4690483-4690669) | |
| 304-481, gnl|hg17|chr1 (32945279-32945471) | |
| 304-481, gnl|Hg17|chr1 (32945462-32945285) | |
| 304-481, gnl|loxAfr1|scaffold_22217 (4046-4232) | |
| 304-481, gnl|mm7|chr4 (128641943-128641751) | |
| 304-481, gnl|Mm7|chr4 (128641758-128641935) | |
| 304-481, gnl|monDom2|scaffold_43 (6905503-6905305) | |
| 304-481, gnl|panTro1|chr1 (33688470-33688662) | |
| 304-481, gnl|rheMac2|chr1 (35594072-35594264) | |
| 304-481, gnl|rn3|chr5 (148366958-148366766) | |
| 304-481, gnl|tetNig1|chr21 (4171932-4172119) | |
| 304-481, gnl|xenTro1|scaffold_439 (140192-140384) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-177, gnl|bosTau2|chr2 (74092100-74091913) | |
| 1-177, gnl|Hg17|chr1 (32952042-32951862) | |
| 1-177, gnl|Mm7|chr4 (128634560-128634744) | |
| 304-481, gnl|bosTau2|chr2 (74087038-74086861) | |
| 304-481, gnl|canFam2|chr2 (71429773-71429578) | |
| 304-481, gnl|danRer3|chr19 (45588668-45588860) | |
| 304-481, gnl|dasNov1|scaffold_27281 (12643-12832) | |
| 304-481, gnl|echTel1|scaffold_304001 (27072-27257) | |
| 304-481, gnl|fr1|chrUn (1034722-1034534) | |
| 304-481, gnl|galGal2|chr23 (4690483-4690669) | |
| 304-481, gnl|hg17|chr1 (32945279-32945471) | |
| 304-481, gnl|Hg17|chr1 (32945462-32945285) | |
| 304-481, gnl|loxAfr1|scaffold_22217 (4046-4232) | |
| 304-481, gnl|mm7|chr4 (128641943-128641751) | |
| 304-481, gnl|Mm7|chr4 (128641758-128641935) | |
| 304-481, gnl|monDom2|scaffold_43 (6905503-6905305) | |
| 304-481, gnl|panTro1|chr1 (33688470-33688662) | |
| 304-481, gnl|rheMac2|chr1 (35594072-35594264) | |
| 304-481, gnl|rn3|chr5 (148366958-148366766) | |
| 304-481, gnl|tetNig1|chr21 (4171932-4172119) | |
| 304-481, gnl|xenTro1|scaffold_439 (140192-140384) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| nmm (0.132802) | |
| med (0.116252) |