Non-Coding RNA Search

Ss1.1-Liv1-LVRM10029F07.5

Sequence:


               
               ATGATTGGAATGTCAAACTCCTCAAAGTTGACCAGGACAGCGCTTTGCACAATGATCTCC
AGATCCTCAAAGAGAAAGAAGGAGCCGACTTCATCCTACTTAACTTTTCTTTTAAAGTAA
GGCCTTCTTTTCTAGAACCTCCCTCCCCCTCCTCAGCCTATGCCGCCTCCTCCACCTTAG
AGTCCCCCGAGGACGCTGGCCTGCCTTCTCTGATCATCGCCTGTCTCTCCCTCAGGATAA
CTTTCCCTTTGACCCGCCATTTGTCAGGGTTGTGTCTCCAGTCCTCTCCGGAGGGTGAGT
GGCCCAGCCAGGGCAGAGGGTGAGGAAGGGCGGGGACCTCTCGCCAGGCATGCCTGACTA
ACCTTTCTTCTGCAGGTATGTTCTGGGTGGAGGTGCCATCTGCATGGAACTTCTCACCAA
GCAGGTGAGCCTGCTGGCCTGGGCAGGGCCAGGTTGAGCTTTACCCACACAGCCCCCTAC
ATAAGGTGGCCTTTTCATTCTGCCGGGCAGGCCCTGCACCCACTGACCTGGGCAAACAGA
TGGCTGTTCTGGGAGTGAAGAGCAGGGGCCCTTTAGTAGGTGCAGCTGCTGTCTGGAGAA
CAAGCTCTTGAGACCTGTTCGCTTCACCCCCACTGTTTCCTAGGGCTGGAGCAGTGCCTA
CTCAATAGAGTCAGTGATCATGCAGATCAGTGCCACACTGGTGAAGGGAAAAGCACGAGT
ACAGTTCGGAGCCAACAAAGTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGATTGGAATGTCAAACTCCTCAAAGTTGACCAGGACAGCGCTTTGCACAATGATCTCC
AGATCCTCAAAGAGAAAGAAGGAGCCGACTTCATCCTACTTAACTTTTCTTTTAAAGTAA
GGCCTTCTTTTCTAGAACCTCCCTCCCCCTCCTCAGCCTATGCCGCCTCCTCCACCTTAG
AGTCCCCCGAGGACGCTGGCCTGCCTTCTCTGATCATCGCCTGTCTCTCCCTCAGGATAA
CTTTCCCTTTGACCCGCCATTTGTCAGGGTTGTGTCTCCAGTCCTCTCCGGAGGGTGAGT
GGCCCAGCCAGGGCAGAGGGTGAGGAAGGGCGGGGACCTCTCGCCAGGCATGCCTGACTA
ACCTTTCTTCTGCAGGTATGTTCTGGGTGGAGGTGCCATCTGCATGGAACTTCTCACCAA
GCAGGTGAGCCTGCTGGCCTGGGCAGGGCCAGGTTGAGCTTTACCCACACAGCCCCCTAC
ATAAGGTGGCCTTTTCATTCTGCCGGGCAGGCCCTGCACCCACTGACCTGGGCAAACAGA
TGGCTGTTCTGGGAGTGAAGAGCAGGGGCCCTTTAGTAGGTGCAGCTGCTGTCTGGAGAA
CAAGCTCTTGAGACCTGTTCGCTTCACCCCCACTGTTTCCTAGGGCTGGAGCAGTGCCTA
CTCAATAGAGTCAGTGATCATGCAGATCAGTGCCACACTGGTGAAGGGAAAAGCACGAGT
ACAGTTCGGAGCCAACAAAGTAAG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               19-433, gnl|bosTau2|chr3 (8611501-8611095)
               

               
               19-433, gnl|Hg17|chr1 (151337738-151337311)
               

               
               19-433, gnl|Mm7|chr3 (89907181-89907604)
               


               
               480-744, gnl|bosTau2|chr3 (8611010-8610725)
               

               
               480-744, gnl|Hg17|chr1 (151337230-151336941)
               

               
               480-744, gnl|Mm7|chr3 (89907686-89907968)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-433, gnl|bosTau2|chr3 (8611501-8611095)
               

               
               19-433, gnl|Hg17|chr1 (151337738-151337311)
               

               
               19-433, gnl|Mm7|chr3 (89907181-89907604)
               


               
               480-744, gnl|bosTau2|chr3 (8611010-8610725)
               

               
               480-744, gnl|Hg17|chr1 (151337230-151336941)
               

               
               480-744, gnl|Mm7|chr3 (89907686-89907968)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	19-433, gnl\|bosTau2\|chr3 (8611501-8611095)
	19-433, gnl\|Hg17\|chr1 (151337738-151337311)
	19-433, gnl\|Mm7\|chr3 (89907181-89907604)

	480-744, gnl\|bosTau2\|chr3 (8611010-8610725)
	480-744, gnl\|Hg17\|chr1 (151337230-151336941)
	480-744, gnl\|Mm7\|chr3 (89907686-89907968)