Non-Coding RNA Search

Ss1.1-Liv1-LVRM10030B11.5

Sequence:


               
               TCCGAGGACTTAATGGAGGTTCAACCTTGTGGTGAGGAGAGAGTTCTTGTAGAGGCTCCT
GTGAGTCTTCCCTGAGAAGATACCCCCCGAGCCGCGTGCGCGAATCGGCTTCCGAGGCTG
GGGGCCGCTGAGCCCTGGAGCACTCGAAGCATTTGGTCCCTGCTGCGCTGGATGCCATGA
GTTGCTAAAATTGAGCCTGGCTTTAGAGCTGCCTTGTGGTACGGCGTGTGGGGCACAGAG
CCATGTCGGACCTCCTTCTCCTGGGCCTGATTGGGGCCCTGACTCTGCTGCTGCTGCTGA
CACTGCTGGCCTTTGCTGGGTACTCAGGGCTGCTGGCTGGGGTGGCAGTGAGTGCTGGCT
CACCTCCCATCCGCAACGTCACCATGGCCTACAAGTTCCACATGGGCCCCTACAGTGAGA
CTGGGCGGCTTTTCACGGAGAGCTGCAGTGTCTCCCCCAAGCTCCGCTCCATTGCTGTCT
ACTATGACAACCCCCACATGGTGCCCCCTGAGAAATGCCGCTGTGCGGTGGGCAGCATTC
TGAGTGAAGGTGAGGAGTCACCCTCCCCAGAGCTCATCCGACTGTATCAGAAATTTGGCT
TCAAGATATTCTCCTTCCCGACACCCAGCCATGTGGTGACAGCCACTTTCCCCTACACCA
CCACCCTGTCCATCTGGCTGGCTACCCGCCGTGTCCATCCTGCCCTGGATGCCTACATCA
AGGAGCGGAAGCTGTGTGCCCACCCACGGCTGGAGATCTACCAGCAAGACCAGATCTACT
TCATGTGCCCGCTGGCACGGCAGGGAGACTTCTATGTGCCTGAGGTGAAGGAGACAGAGC
GGAGAAGCCGGGGGCCTGTGGAGGCCAGCGACACTCAGGTGGATAGCACAGGAGCTGATA
CCATGAGTGACTCAAGTTCTGTAAGCCTGGAAGTGGGTCCTGGCAGCCGGGAGACTTCAG
CGGCCACACTGTCCCCTGGGGTGAGCAGCCGTGGCTGGGACGACGGTGACACCCACAGTG
AGCATAGTTACAGCGAGTCAGGCGCCAGTGGCTCATCCTTTGAGGAGCTGGACTTGGAGG
GTGAGGGACCCTTAGGGGAGCCAAAGCTGAGTCCTGATGCCGAGCCCCTGGGGGCTTCCA
AGTGGCCCCGGGAGCCCAGTACTCCTGAGAAGGGCGAGGAGTAACCTGCAGCCTGCGCCT
TCCTATGGTGCATTGCTAAGGAACTGAGCAGACTCTTGAGCCCTCTTCCTCCTCCACCTC
CTGGGCTCAGGCTGGGGCCAGGGGTCTCAGGGAGGCCTGAATTCTGCTACCCTGGGCCTC
TAGCTAAGCCTTCTCCTCACTGCCCTCTCGGCTACCAGAGCCAAAGGAGCCGGGACTGTT
GTCTGCACTCAGCCCTTGAACACAGGGTGCTACCCTTGTTACATCTCTTTTTCAGATTCA
TGTTGAAGCTTCCAGGACCCAGAATAAAGCAAATGATTTTCTTTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGAGGACTTAATGGAGGTTCAACCTTGTGGTGAGGAGAGAGTTCTTGTAGAGGCTCCT
GTGAGTCTTCCCTGAGAAGATACCCCCCGAGCCGCGTGCGCGAATCGGCTTCCGAGGCTG
GGGGCCGCTGAGCCCTGGAGCACTCGAAGCATTTGGTCCCTGCTGCGCTGGATGCCATGA
GTTGCTAAAATTGAGCCTGGCTTTAGAGCTGCCTTGTGGTACGGCGTGTGGGGCACAGAG
CCATGTCGGACCTCCTTCTCCTGGGCCTGATTGGGGCCCTGACTCTGCTGCTGCTGCTGA
CACTGCTGGCCTTTGCTGGGTACTCAGGGCTGCTGGCTGGGGTGGCAGTGAGTGCTGGCT
CACCTCCCATCCGCAACGTCACCATGGCCTACAAGTTCCACATGGGCCCCTACAGTGAGA
CTGGGCGGCTTTTCACGGAGAGCTGCAGTGTCTCCCCCAAGCTCCGCTCCATTGCTGTCT
ACTATGACAACCCCCACATGGTGCCCCCTGAGAAATGCCGCTGTGCGGTGGGCAGCATTC
TGAGTGAAGGTGAGGAGTCACCCTCCCCAGAGCTCATCCGACTGTATCAGAAATTTGGCT
TCAAGATATTCTCCTTCCCGACACCCAGCCATGTGGTGACAGCCACTTTCCCCTACACCA
CCACCCTGTCCATCTGGCTGGCTACCCGCCGTGTCCATCCTGCCCTGGATGCCTACATCA
AGGAGCGGAAGCTGTGTGCCCACCCACGGCTGGAGATCTACCAGCAAGACCAGATCTACT
TCATGTGCCCGCTGGCACGGCAGGGAGACTTCTATGTGCCTGAGGTGAAGGAGACAGAGC
GGAGAAGCCGGGGGCCTGTGGAGGCCAGCGACACTCAGGTGGATAGCACAGGAGCTGATA
CCATGAGTGACTCAAGTTCTGTAAGCCTGGAAGTGGGTCCTGGCAGCCGGGAGACTTCAG
CGGCCACACTGTCCCCTGGGGTGAGCAGCCGTGGCTGGGACGACGGTGACACCCACAGTG
AGCATAGTTACAGCGAGTCAGGCGCCAGTGGCTCATCCTTTGAGGAGCTGGACTTGGAGG
GTGAGGGACCCTTAGGGGAGCCAAAGCTGAGTCCTGATGCCGAGCCCCTGGGGGCTTCCA
AGTGGCCCCGGGAGCCCAGTACTCCTGAGAAGGGCGAGGAGTAACCTGCAGCCTGCGCCT
TCCTATGGTGCATTGCTAAGGAACTGAGCAGACTCTTGAGCCCTCTTCCTCCTCCACCTC
CTGGGCTCAGGCTGGGGCCAGGGGTCTCAGGGAGGCCTGAATTCTGCTACCCTGGGCCTC
TAGCTAAGCCTTCTCCTCACTGCCCTCTCGGCTACCAGAGCCAAAGGAGCCGGGACTGTT
GTCTGCACTCAGCCCTTGAACACAGGGTGCTACCCTTGTTACATCTCTTTTTCAGATTCA
TGTTGAAGCTTCCAGGACCCAGAATAAAGCAAATGATTTTCTTTGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               TX164_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               TX164_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1048-1441, - strand, RNAz p=0.998598

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1048-1441, - strand, RNAz p=0.998598

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               201-502, gnl|bosTau2|chr22 (37599583-37599884)
               

               
               201-502, gnl|Hg17|chr3 (51683319-51683620)
               

               
               201-502, gnl|Mm7|chr9 (106411619-106411314)
               


               
               889-1488, gnl|bosTau2|chr22 (37625955-37626547)
               

               
               889-1488, gnl|Hg17|chr3 (51712777-51713371)
               

               
               889-1488, gnl|Mm7|chr9 (106388758-106388202)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               201-502, gnl|bosTau2|chr22 (37599583-37599884)
               

               
               201-502, gnl|Hg17|chr3 (51683319-51683620)
               

               
               201-502, gnl|Mm7|chr9 (106411619-106411314)
               


               
               889-1488, gnl|bosTau2|chr22 (37625955-37626547)
               

               
               889-1488, gnl|Hg17|chr3 (51712777-51713371)
               

               
               889-1488, gnl|Mm7|chr9 (106388758-106388202)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cag (0.453583)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.453583)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	201-502, gnl\|bosTau2\|chr22 (37599583-37599884)
	201-502, gnl\|Hg17\|chr3 (51683319-51683620)
	201-502, gnl\|Mm7\|chr9 (106411619-106411314)

	889-1488, gnl\|bosTau2\|chr22 (37625955-37626547)
	889-1488, gnl\|Hg17\|chr3 (51712777-51713371)
	889-1488, gnl\|Mm7\|chr9 (106388758-106388202)

	cag (0.453583)
	fbs (0.175346)
	mcp (0.170648)
	cki (0.165235)
	csp (0.161186)
	nca (0.136874)
	pla (0.133672)
	nmm (0.132802)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	cty (0.10408)