Non-Coding RNA Search

Ss1.1-Liv1-LVRM10030E11.5

Sequence:


               
               CGCCGCCATCTTGCGGGCTTGTGTCATAGTCCGTGCGGGGAAACCGCTTTGACGCCTCAC
TGCTCACTTACGCCCAGGCGGACTGGCAGCCCTGAGCGTCGCCGTCATGCCCGCCGGACC
CGTGCAGGCGGTGCCTCCACCGCCGCCCGCGGCCACCGAGCCCAAACAGCCCACAGAAGA
AGAAGCATCTTCTAAAGAGGATTCTACCCCTTCCAAGCCAGTGGTGGGGATTATTTACCC
TCCTCCAGAGGTCAGGAATATCGTTGACAAGACTGCCAGCTTTGTGGCCAGAAATGGACC
TGAATTTGAAGCTAGGATACGACAGAACGAGATCAACAACCCCAAGTTCAACTTCCTGAA
CCCCAACGATCCTTACCATGCCTACTACCGCCACAAAGTCAGCGAGTTCAAGGAGGGGAA
GGCTCAGGAACCCTCGGCTGCCATCCCCAAGGTCATGCAGCAGCAACAGCAAGCCACCCA
GCAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAAACCATCGTGCCCAAAGA
ACCCCCTCCCGAATTCGAGTTCATCGCAGACCCTCCCTCCATCTCAGCGTTCGACCTGGA
CGTGGTGAAGCTGACGGCTCAGTTTGTGGCCAGAAATGGGCGCCAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGCCATCTTGCGGGCTTGTGTCATAGTCCGTGCGGGGAAACCGCTTTGACGCCTCAC
TGCTCACTTACGCCCAGGCGGACTGGCAGCCCTGAGCGTCGCCGTCATGCCCGCCGGACC
CGTGCAGGCGGTGCCTCCACCGCCGCCCGCGGCCACCGAGCCCAAACAGCCCACAGAAGA
AGAAGCATCTTCTAAAGAGGATTCTACCCCTTCCAAGCCAGTGGTGGGGATTATTTACCC
TCCTCCAGAGGTCAGGAATATCGTTGACAAGACTGCCAGCTTTGTGGCCAGAAATGGACC
TGAATTTGAAGCTAGGATACGACAGAACGAGATCAACAACCCCAAGTTCAACTTCCTGAA
CCCCAACGATCCTTACCATGCCTACTACCGCCACAAAGTCAGCGAGTTCAAGGAGGGGAA
GGCTCAGGAACCCTCGGCTGCCATCCCCAAGGTCATGCAGCAGCAACAGCAAGCCACCCA
GCAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAAACCATCGTGCCCAAAGA
ACCCCCTCCCGAATTCGAGTTCATCGCAGACCCTCCCTCCATCTCAGCGTTCGACCTGGA
CGTGGTGAAGCTGACGGCTCAGTTTGTGGCCAGAAATGGGCGCCAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26342128|dbj|BAC34726.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26342128|dbj|BAC34726.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-169, gnl|bosTau2|chr17 (42561710-42561543)
               

               
               2-169, gnl|Hg17|chr22 (29077440-29077273)
               

               
               2-169, gnl|Mm7|chr11 (4112384-4112553)
               


               
               290-509, gnl|bosTau2|chr17 (42553066-42552847)
               

               
               290-509, gnl|Hg17|chr22 (29067064-29066844)
               

               
               290-509, gnl|Mm7|chr11 (4118497-4118713)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-169, gnl|bosTau2|chr17 (42561710-42561543)
               

               
               2-169, gnl|Hg17|chr22 (29077440-29077273)
               

               
               2-169, gnl|Mm7|chr11 (4112384-4112553)
               


               
               290-509, gnl|bosTau2|chr17 (42553066-42552847)
               

               
               290-509, gnl|Hg17|chr22 (29067064-29066844)
               

               
               290-509, gnl|Mm7|chr11 (4118497-4118713)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               med (0.116252)

	2-169, gnl\|bosTau2\|chr17 (42561710-42561543)
	2-169, gnl\|Hg17\|chr22 (29077440-29077273)
	2-169, gnl\|Mm7\|chr11 (4112384-4112553)

	290-509, gnl\|bosTau2\|chr17 (42553066-42552847)
	290-509, gnl\|Hg17\|chr22 (29067064-29066844)
	290-509, gnl\|Mm7\|chr11 (4118497-4118713)