Ss1.1-Liv1-LVRM10031B12.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGCCTGATGGGGCGGGGTCCTCAGGGGGCGTGACCCGGCCTGACCACCTCGGCGAGT CCCGGCCCGCTGATCGCCCGCAGCCCGCAACCCGCAGCCAGCTTCTCTGCTCGGTGCTCG CCAGCATGTCCTTCGTCCCTGTGGCCGAGGATTCTGACTTCCCTATCCACAACCTGCCCT ACGGCGTCTTCTCCACTACAGGCAACTCAAGACCGAGGATCGGCGTGGCGATTGGTGACC AGATCCTGGACCTCAGTGTCATAAAGCACCTCTTCACTGGGCCTGTCCTCTCCAAACACC AAGATGTCTTTGATCAGCCAACTCTTAACAGCTTCATGGGCCTGGGCCAGGCTGCCTGGA AGGAAGCAAGAGCATTCTTGCAAAACCTACTATCTGCCAGCCAAGCCAGGCTCAGAGATG ACACAGAACTTCGGAAGCGCGCATTCACCTCCCAGGCCTCCGCCACGATGCATCTTCCTG CCGCCATAGGTGACTACACAGACTTCTATTCCTCCCGGCAGCACGCCACAAACGTCGGAG TCATGTTCAGGGGCAAGGAGACTGCACTGATGCCCAATTGGCTGCATCTACCGGTGGCCT ACCATGGCCGTGCCTCCTCTGTCGTGGTGTCTGGCACCCCAATCCGCAGGCCCATGGGAC AGATGCGCCCCGATGACTCTAAGCCTCCTGTGTATGGTGCCTGCAAACTCTTGGACATGG AGTTGGAAATGGCTTTCTTTGTAGGCCCTGGGAACAGACTTGGAGAGCCCATCCCCATCT CCAAGGCCCACGAGCACATTTTTGGAATGGTCCTTATGAACGACTGGAGTGCTCGAGACA TTCAGAAGTGGGAGTATGTCCCTCTTGGGCCATTCCTCGGGAAGAGTTTTGGAACCACCA TATCCCCATGGGTGGTGCCCATGGATGCCCTCATGCCCTTTGCTGTGCCCAACCCAGAGC AGGACCCCAAGCCTCTGCCATATCTCCGCCACGACCAGCCCTACATGTTCGACATCAACC TCTCTGTCGCCCTGAAAGGAGAAGGAATGAGCCAAGCGGCTACCATATGCAGGTCCAACT TTAAGTACATGTACTGGACGATGTTGCAGCAGCTCACTCACCACTCTGTCAATGGCTGCA ACCTGCAGCCTGGGGACCTCTTGGGTTCTGGAACCATCAGCGGGCCGGAGCCAGAAAGCT TTGGCTCCATGCTGGAGCTGTCGTGGAGGGGAACAAAGGCCATAGAGCTGGGGAATGGAC AGACCAGGAAGTTTCTGCTGGACGGGGACGAAGTCATCATAACAGGGCACTGCCAGGGGG ACGGTTACCGTGTCGGCTTTGGCCAGTGTACGGGAAAAGTGCTGCCCGCCCTCTCGCCGG CTTGACGTGCTCTCTGTTCTCCTGGAAACAAAGCCTTGAGCACCACCCTCCAGCTCCCTG GGAGGACCAGGGTCCCCTCTGTGGCGGTAGCCCTGGCTCTTCATTCAGTATTAAAGCCAT CGCTCTGTCTTCATGCTCTGAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGCCTGATGGGGCGGGGTCCTCAGGGGGCGTGACCCGGCCTGACCACCTCGGCGAGT CCCGGCCCGCTGATCGCCCGCAGCCCGCAACCCGCAGCCAGCTTCTCTGCTCGGTGCTCG CCAGCATGTCCTTCGTCCCTGTGGCCGAGGATTCTGACTTCCCTATCCACAACCTGCCCT ACGGCGTCTTCTCCACTACAGGCAACTCAAGACCGAGGATCGGCGTGGCGATTGGTGACC AGATCCTGGACCTCAGTGTCATAAAGCACCTCTTCACTGGGCCTGTCCTCTCCAAACACC AAGATGTCTTTGATCAGCCAACTCTTAACAGCTTCATGGGCCTGGGCCAGGCTGCCTGGA AGGAAGCAAGAGCATTCTTGCAAAACCTACTATCTGCCAGCCAAGCCAGGCTCAGAGATG ACACAGAACTTCGGAAGCGCGCATTCACCTCCCAGGCCTCCGCCACGATGCATCTTCCTG CCGCCATAGGTGACTACACAGACTTCTATTCCTCCCGGCAGCACGCCACAAACGTCGGAG TCATGTTCAGGGGCAAGGAGACTGCACTGATGCCCAATTGGCTGCATCTACCGGTGGCCT ACCATGGCCGTGCCTCCTCTGTCGTGGTGTCTGGCACCCCAATCCGCAGGCCCATGGGAC AGATGCGCCCCGATGACTCTAAGCCTCCTGTGTATGGTGCCTGCAAACTCTTGGACATGG AGTTGGAAATGGCTTTCTTTGTAGGCCCTGGGAACAGACTTGGAGAGCCCATCCCCATCT CCAAGGCCCACGAGCACATTTTTGGAATGGTCCTTATGAACGACTGGAGTGCTCGAGACA TTCAGAAGTGGGAGTATGTCCCTCTTGGGCCATTCCTCGGGAAGAGTTTTGGAACCACCA TATCCCCATGGGTGGTGCCCATGGATGCCCTCATGCCCTTTGCTGTGCCCAACCCAGAGC AGGACCCCAAGCCTCTGCCATATCTCCGCCACGACCAGCCCTACATGTTCGACATCAACC TCTCTGTCGCCCTGAAAGGAGAAGGAATGAGCCAAGCGGCTACCATATGCAGGTCCAACT TTAAGTACATGTACTGGACGATGTTGCAGCAGCTCACTCACCACTCTGTCAATGGCTGCA ACCTGCAGCCTGGGGACCTCTTGGGTTCTGGAACCATCAGCGGGCCGGAGCCAGAAAGCT TTGGCTCCATGCTGGAGCTGTCGTGGAGGGGAACAAAGGCCATAGAGCTGGGGAATGGAC AGACCAGGAAGTTTCTGCTGGACGGGGACGAAGTCATCATAACAGGGCACTGCCAGGGGG ACGGTTACCGTGTCGGCTTTGGCCAGTGTACGGGAAAAGTGCTGCCCGCCCTCTCGCCGG CTTGACGTGCTCTCTGTTCTCCTGGAAACAAAGCCTTGAGCACCACCCTCCAGCTCCCTG GGAGGACCAGGGTCCCCTCTGTGGCGGTAGCCCTGGCTCTTCATTCAGTATTAAAGCCAT CGCTCTGTCTTCATGCTCTGAGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 831-932, + strand, RNAz p=0.759295 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 831-932, + strand, RNAz p=0.759295 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 3-206, gnl|bosTau2|chr21 (22049861-22049672) | |
| 3-206, gnl|Hg17|chr15 (78232351-78232532) | |
| 3-206, gnl|Mm7|chr7 (80527428-80527223) | |
| 316-439, gnl|bosTau2|chr21 (22044252-22044129) | |
| 316-439, gnl|canFam2|chr3 (60185307-60185206) | |
| 316-439, gnl|danRer3|chr15 (12666713-12666814) | |
| 316-439, gnl|fr1|chrUn (285086541-285086440) | |
| 316-439, gnl|hg17|chr15 (78239152-78239253) | |
| 316-439, gnl|Hg17|chr15 (78239151-78239274) | |
| 316-439, gnl|mm7|chr7 (80522737-80522636) | |
| 316-439, gnl|Mm7|chr7 (80522736-80522613) | |
| 316-439, gnl|oryCun1|scaffold_169423 (16522-16421) | |
| 316-439, gnl|panTro1|chr16 (78947228-78947329) | |
| 316-439, gnl|rheMac2|chr7 (59281191-59281292) | |
| 316-439, gnl|rn3|chr1 (140950085-140949984) | |
| 316-439, gnl|tetNig1|chrUn_random (152407460-152407561) | |
| 444-581, gnl|bosTau2|chr21 (22037868-22037731) | |
| 444-581, gnl|Hg17|chr15 (78241595-78241734) | |
| 444-581, gnl|Mm7|chr7 (80520762-80520633) | |
| 831-963, gnl|bosTau2|chr21 (22031724-22031592) | |
| 831-963, gnl|canFam2|chr3 (60177045-60176890) | |
| 831-963, gnl|danRer3|chrNA (48928277-48928430) | |
| 831-963, gnl|echTel1|scaffold_90055 (1150-994) | |
| 831-963, gnl|hg17|chr15 (78252393-78252550) | |
| 831-963, gnl|Hg17|chr15 (78252410-78252542) | |
| 831-963, gnl|loxAfr1|scaffold_27502 (64739-64893) | |
| 831-963, gnl|mm7|chr7 (80516443-80516286) | |
| 831-963, gnl|Mm7|chr7 (80516424-80516292) | |
| 831-963, gnl|monDom2|scaffold_45 (7167629-7167476) | |
| 831-963, gnl|oryCun1|scaffold_169423 (4797-4640) | |
| 831-963, gnl|panTro1|chr16 (78960484-78960641) | |
| 831-963, gnl|rheMac2|chr7 (59294068-59294225) | |
| 831-963, gnl|rn3|chr1 (140942065-140941909) | |
| 831-963, gnl|xenTro1|scaffold_5 (1171590-1171730) | |
| 1084-1188, gnl|bosTau2|chr21 (22027751-22027647) | |
| 1084-1188, gnl|canFam2|chr3 (60172241-60172108) | |
| 1084-1188, gnl|danRer3|chrNA (48936191-48936305) | |
| 1084-1188, gnl|echTel1|scaffold_316881 (42172-42037) | |
| 1084-1188, gnl|fr1|chrUn (277996571-277996702) | |
| 1084-1188, gnl|hg17|chr15 (78259496-78259631) | |
| 1084-1188, gnl|Hg17|chr15 (78259519-78259623) | |
| 1084-1188, gnl|mm7|chr7 (80511266-80511147) | |
| 1084-1188, gnl|Mm7|chr7 (80511257-80511153) | |
| 1084-1188, gnl|monDom2|scaffold_45 (7157601-7157478) | |
| 1084-1188, gnl|panTro1|chr16 (78967642-78967777) | |
| 1084-1188, gnl|rheMac2|chr7 (59301509-59301644) | |
| 1084-1188, gnl|rn3|chr1 (140935599-140935465) | |
| 1084-1188, gnl|tetNig1|chrUn_random (102934983-102935101) | |
| 1084-1188, gnl|xenTro1|scaffold_5 (1176016-1176145) | |
| 1303-1524, gnl|bosTau2|chr21 (22020133-22019906) | |
| 1303-1524, gnl|Hg17|chr15 (78265524-78265733) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-206, gnl|bosTau2|chr21 (22049861-22049672) | |
| 3-206, gnl|Hg17|chr15 (78232351-78232532) | |
| 3-206, gnl|Mm7|chr7 (80527428-80527223) | |
| 316-439, gnl|bosTau2|chr21 (22044252-22044129) | |
| 316-439, gnl|canFam2|chr3 (60185307-60185206) | |
| 316-439, gnl|danRer3|chr15 (12666713-12666814) | |
| 316-439, gnl|fr1|chrUn (285086541-285086440) | |
| 316-439, gnl|hg17|chr15 (78239152-78239253) | |
| 316-439, gnl|Hg17|chr15 (78239151-78239274) | |
| 316-439, gnl|mm7|chr7 (80522737-80522636) | |
| 316-439, gnl|Mm7|chr7 (80522736-80522613) | |
| 316-439, gnl|oryCun1|scaffold_169423 (16522-16421) | |
| 316-439, gnl|panTro1|chr16 (78947228-78947329) | |
| 316-439, gnl|rheMac2|chr7 (59281191-59281292) | |
| 316-439, gnl|rn3|chr1 (140950085-140949984) | |
| 316-439, gnl|tetNig1|chrUn_random (152407460-152407561) | |
| 444-581, gnl|bosTau2|chr21 (22037868-22037731) | |
| 444-581, gnl|Hg17|chr15 (78241595-78241734) | |
| 444-581, gnl|Mm7|chr7 (80520762-80520633) | |
| 831-963, gnl|bosTau2|chr21 (22031724-22031592) | |
| 831-963, gnl|canFam2|chr3 (60177045-60176890) | |
| 831-963, gnl|danRer3|chrNA (48928277-48928430) | |
| 831-963, gnl|echTel1|scaffold_90055 (1150-994) | |
| 831-963, gnl|hg17|chr15 (78252393-78252550) | |
| 831-963, gnl|Hg17|chr15 (78252410-78252542) | |
| 831-963, gnl|loxAfr1|scaffold_27502 (64739-64893) | |
| 831-963, gnl|mm7|chr7 (80516443-80516286) | |
| 831-963, gnl|Mm7|chr7 (80516424-80516292) | |
| 831-963, gnl|monDom2|scaffold_45 (7167629-7167476) | |
| 831-963, gnl|oryCun1|scaffold_169423 (4797-4640) | |
| 831-963, gnl|panTro1|chr16 (78960484-78960641) | |
| 831-963, gnl|rheMac2|chr7 (59294068-59294225) | |
| 831-963, gnl|rn3|chr1 (140942065-140941909) | |
| 831-963, gnl|xenTro1|scaffold_5 (1171590-1171730) | |
| 1084-1188, gnl|bosTau2|chr21 (22027751-22027647) | |
| 1084-1188, gnl|canFam2|chr3 (60172241-60172108) | |
| 1084-1188, gnl|danRer3|chrNA (48936191-48936305) | |
| 1084-1188, gnl|echTel1|scaffold_316881 (42172-42037) | |
| 1084-1188, gnl|fr1|chrUn (277996571-277996702) | |
| 1084-1188, gnl|hg17|chr15 (78259496-78259631) | |
| 1084-1188, gnl|Hg17|chr15 (78259519-78259623) | |
| 1084-1188, gnl|mm7|chr7 (80511266-80511147) | |
| 1084-1188, gnl|Mm7|chr7 (80511257-80511153) | |
| 1084-1188, gnl|monDom2|scaffold_45 (7157601-7157478) | |
| 1084-1188, gnl|panTro1|chr16 (78967642-78967777) | |
| 1084-1188, gnl|rheMac2|chr7 (59301509-59301644) | |
| 1084-1188, gnl|rn3|chr1 (140935599-140935465) | |
| 1084-1188, gnl|tetNig1|chrUn_random (102934983-102935101) | |
| 1084-1188, gnl|xenTro1|scaffold_5 (1176016-1176145) | |
| 1303-1524, gnl|bosTau2|chr21 (22020133-22019906) | |
| 1303-1524, gnl|Hg17|chr15 (78265524-78265733) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cli (0.91687) | |
| cki (0.330469) | |
| fli (0.202881) | |
| nco (0.161734) | |
| eli (0.151814) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.91687) | |
| cki (0.330469) | |
| fli (0.202881) | |
| nco (0.161734) | |
| eli (0.151814) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) |