Non-Coding RNA Search

Ss1.1-Liv1-LVRM10031H12.5.5

Sequence:


               
               GCAGGCAGCGGCTCTGGGTCCACTCAGCGCATCCCGCTCTGCGAGGCAGACATGAGGGCG
GAGGGAATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGGCTGGGCTCTGCTCCAGGGTC
CACTGCCTCCCAGCAGATGACCTTGCCTCAAAGACTGTGACCCTGAAGGGCCAGATCAAG
AAGCTGCCAGCGCACAACACCGCCGTCGTCTCCAGCAACACCGACTTCGCCTTCAGCCTC
TACAAGCAGCTGGTTTCTTTAGACCCCAGTAAGAACGTCATCTTCTCCCCGCTGAGCGTC
TCCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCGAGGCCCCACCCTGATAGAGCTCCTG
GAAGGCCTCAAGTTCAACCTCACAAAGACCCCCGAGGCAGAAATCCACCAGGGCTTCCAG
CACCTCCTGCGGGCCCTCAGCCAACCCAGCAACCTGCTGCAGCTGAACGTGGGCAACGCC
ATGTTCGTGGATGAGCGGCTGAAGCTGCTGGACAAGTTCGTCCAAGATGCCCATGAGCTG
TACTTCTCCGAGGCCTTCTCCATCAGCTTTAAGGACTCCGATGCTGCCATAGAGTTCATC
AACAACTATGTAAAGAATAAGACCAAGGGGAAAATTGTGGATTTGTTCAAACAACTTTCC
CCAGATACCGTCCTGGTTCTGGTGAACTGCATCTACTTTAAAGCCAAGTGGAAGATGCCC
TTCAATCCCAGCTTTACCACGGAGGCAGATTTCCACGTGAGCAAGAACAGGACGGTGAGG
GTGCCCATGATGGGCATTACGGGCCGGACCCTGCCTTACTTCCGGGACGAGGAGCTGGCC
TGCACGGTGGTGGAGCTCCCGTACACCAGCAACGACAGCGCGCTCTTCATCCTCCCTGAC
GACGGCAGGATGGCGGCCGTGGAAGCCCAGCTGCTCCCGGAGACGCTGAGGAGGTGGAGA
GACTCCCTGCACCAGAGACGGATAACTGCCCTCCACCTGCCACGGTTTTCCGTCTCCGGG
GACTATAAGCTGGGGGAGATCCTTCCCCAGCGGGGCATTAAGAAAGTCTTCAGCCACCAG
GCTGACCTGTCAGGAATCACAGATCAAGCGCGCCTGGAAGTTTCCCAGGTGGTCCACAGA
GCTGTGCTTGACGTGGACGAGGAGGGCACGGAAGGAGCTGCTGCCACGGGAATCAGCATA
CAACCCACATCCATAGAGTTTTTGACGGTGCATTTCAACAGGCCCTTTCTCTTTTTCATA
ATTCACAAAGACACCCAGAGCATCCTCTTTTCAGGCAAAGTCACTAACCCCTCCCCTCCA
AGTGCCAGGTCTCCTCATTAAGGAGCTGGGTGCCCTGGTCCCTGGGGCAGCCTGGCACCA
CCTGCTCACCCTTGGGAAGGTGACAGTCGCCCTCTGGAGGCTCCACATGCCCAGGGAGTC
TGTGCCCTGCTCCGCGGAGGCTCTGAGACCTCGCACAGCAATAAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCAGCGGCTCTGGGTCCACTCAGCGCATCCCGCTCTGCGAGGCAGACATGAGGGCG
GAGGGAATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGGCTGGGCTCTGCTCCAGGGTC
CACTGCCTCCCAGCAGATGACCTTGCCTCAAAGACTGTGACCCTGAAGGGCCAGATCAAG
AAGCTGCCAGCGCACAACACCGCCGTCGTCTCCAGCAACACCGACTTCGCCTTCAGCCTC
TACAAGCAGCTGGTTTCTTTAGACCCCAGTAAGAACGTCATCTTCTCCCCGCTGAGCGTC
TCCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCGAGGCCCCACCCTGATAGAGCTCCTG
GAAGGCCTCAAGTTCAACCTCACAAAGACCCCCGAGGCAGAAATCCACCAGGGCTTCCAG
CACCTCCTGCGGGCCCTCAGCCAACCCAGCAACCTGCTGCAGCTGAACGTGGGCAACGCC
ATGTTCGTGGATGAGCGGCTGAAGCTGCTGGACAAGTTCGTCCAAGATGCCCATGAGCTG
TACTTCTCCGAGGCCTTCTCCATCAGCTTTAAGGACTCCGATGCTGCCATAGAGTTCATC
AACAACTATGTAAAGAATAAGACCAAGGGGAAAATTGTGGATTTGTTCAAACAACTTTCC
CCAGATACCGTCCTGGTTCTGGTGAACTGCATCTACTTTAAAGCCAAGTGGAAGATGCCC
TTCAATCCCAGCTTTACCACGGAGGCAGATTTCCACGTGAGCAAGAACAGGACGGTGAGG
GTGCCCATGATGGGCATTACGGGCCGGACCCTGCCTTACTTCCGGGACGAGGAGCTGGCC
TGCACGGTGGTGGAGCTCCCGTACACCAGCAACGACAGCGCGCTCTTCATCCTCCCTGAC
GACGGCAGGATGGCGGCCGTGGAAGCCCAGCTGCTCCCGGAGACGCTGAGGAGGTGGAGA
GACTCCCTGCACCAGAGACGGATAACTGCCCTCCACCTGCCACGGTTTTCCGTCTCCGGG
GACTATAAGCTGGGGGAGATCCTTCCCCAGCGGGGCATTAAGAAAGTCTTCAGCCACCAG
GCTGACCTGTCAGGAATCACAGATCAAGCGCGCCTGGAAGTTTCCCAGGTGGTCCACAGA
GCTGTGCTTGACGTGGACGAGGAGGGCACGGAAGGAGCTGCTGCCACGGGAATCAGCATA
CAACCCACATCCATAGAGTTTTTGACGGTGCATTTCAACAGGCCCTTTCTCTTTTTCATA
ATTCACAAAGACACCCAGAGCATCCTCTTTTCAGGCAAAGTCACTAACCCCTCCCCTCCA
AGTGCCAGGTCTCCTCATTAAGGAGCTGGGTGCCCTGGTCCCTGGGGCAGCCTGGCACCA
CCTGCTCACCCTTGGGAAGGTGACAGTCGCCCTCTGGAGGCTCCACATGCCCAGGGAGTC
TGTGCCCTGCTCCGCGGAGGCTCTGAGACCTCGCACAGCAATAAAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523270|ref|NP_998952.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523270|ref|NP_998952.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               275-394, - strand, RNAz p=0.537935

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-394, - strand, RNAz p=0.537935

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               36-703, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               36-703, gnl|Hg17|chr14 (94150510-94151174)
               

               
               36-703, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1126-1487, gnl|bosTau2|chr21 (40671456-40671090)
               

               
               1126-1487, gnl|Hg17|chr14 (94159698-94160131)
               

               
               1126-1487, gnl|Mm7|chr12 (101907731-101908136)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-703, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               36-703, gnl|Hg17|chr14 (94150510-94151174)
               

               
               36-703, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1126-1487, gnl|bosTau2|chr21 (40671456-40671090)
               

               
               1126-1487, gnl|Hg17|chr14 (94159698-94160131)
               

               
               1126-1487, gnl|Mm7|chr12 (101907731-101908136)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (1.22249)
               

               
               elu (0.385356)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (1.22249)
               

               
               elu (0.385356)

	36-703, gnl\|bosTau2\|chr21 (40705409-40704769)
	36-703, gnl\|Hg17\|chr14 (94150510-94151174)
	36-703, gnl\|Mm7\|chr12 (101902962-101903629)

	1126-1487, gnl\|bosTau2\|chr21 (40671456-40671090)
	1126-1487, gnl\|Hg17\|chr14 (94159698-94160131)
	1126-1487, gnl\|Mm7\|chr12 (101907731-101908136)