Non-Coding RNA Search

Ss1.1-Liv1-LVRM10032C12.5

Sequence:


               
               AGATTGCAAAGCTCCTTCCTTAGAGAGAGCTGCAGATTTTGCAAGAGCCAGGCTCGCCCA
CCTTGTAGGAGCGCCTTGTGTCCCCTTGAGCCCTCGGTTGCAAAGAGCTGGCCGCCTGAT
TTGATCACTCCCTCACCCAGACTGTATGGTCTCCTGGGACCCTCTTGAGTTGCACATTTC
TGCACCGAGGACTGCAAATCCCCATCGCTCCTAGGACTTGCAGTGTTCTGGAGACTGGAG
ACTGGAGGCTTGCAAGCTACTTTCGCCCGCCCCTGGGCAGACACCCGCCTGAACCACAGG
AGTGTGCCGCTGACTGGCAAGCCAGCTCTTCGCCTCTCTATGAGCCCGTGAGCCTGCGGG
CAGGTGCCGGGCGATGGCGCGGCCCGTGAGCGACAGGACCCCGGCCCCCCTGCTGCTGGG
CGGCCCGGCCGGGGCCCCCCCTGGCGGGGGAGCGCTGCTTGGGTTGCGGAGCCTTCTGCA
GGGGACCAGCAAGCCCAAAGAGCCAACCAGCTGTCTCCTGAAGGAAAAGGAGCGCAAAGC
GGCCCCGCCGGCGGCCACGGTCCCGGGGCCGGGCCTGGAGCCTGCAGGTCCGGCGGATGC
CTCAGCTGGGGCGGTGGTGGGCGGCGGGTCCCCGCGGGGACGCCCGGGGGCTGTGCCCGG
CCCGGGTCTGTTGGCGCCGCTACTGTGGGAGCGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATTGCAAAGCTCCTTCCTTAGAGAGAGCTGCAGATTTTGCAAGAGCCAGGCTCGCCCA
CCTTGTAGGAGCGCCTTGTGTCCCCTTGAGCCCTCGGTTGCAAAGAGCTGGCCGCCTGAT
TTGATCACTCCCTCACCCAGACTGTATGGTCTCCTGGGACCCTCTTGAGTTGCACATTTC
TGCACCGAGGACTGCAAATCCCCATCGCTCCTAGGACTTGCAGTGTTCTGGAGACTGGAG
ACTGGAGGCTTGCAAGCTACTTTCGCCCGCCCCTGGGCAGACACCCGCCTGAACCACAGG
AGTGTGCCGCTGACTGGCAAGCCAGCTCTTCGCCTCTCTATGAGCCCGTGAGCCTGCGGG
CAGGTGCCGGGCGATGGCGCGGCCCGTGAGCGACAGGACCCCGGCCCCCCTGCTGCTGGG
CGGCCCGGCCGGGGCCCCCCCTGGCGGGGGAGCGCTGCTTGGGTTGCGGAGCCTTCTGCA
GGGGACCAGCAAGCCCAAAGAGCCAACCAGCTGTCTCCTGAAGGAAAAGGAGCGCAAAGC
GGCCCCGCCGGCGGCCACGGTCCCGGGGCCGGGCCTGGAGCCTGCAGGTCCGGCGGATGC
CTCAGCTGGGGCGGTGGTGGGCGGCGGGTCCCCGCGGGGACGCCCGGGGGCTGTGCCCGG
CCCGGGTCTGTTGGCGCCGCTACTGTGGGAGCGGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6R2I1_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6R2I1_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               143-254, + strand, RNAz p=0.912862

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-254, + strand, RNAz p=0.912862

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-514, gnl|bosTau2|chr18 (50542715-50543223)
               

               
               1-514, gnl|canFam2|chr1 (110561609-110561078)
               

               
               1-514, gnl|dasNov1|scaffold_96267 (2598-3120)
               

               
               1-514, gnl|hg17|chr19 (53831855-53832381)
               

               
               1-514, gnl|Hg17|chr19 (53832432-53831923)
               

               
               1-514, gnl|loxAfr1|scaffold_20690 (67399-67904)
               

               
               1-514, gnl|mm7|chr7 (41882082-41881567)
               

               
               1-514, gnl|Mm7|chr7 (41881512-41882038)
               

               
               1-514, gnl|monDom2|scaffold_509 (34401-34859)
               

               
               1-514, gnl|oryCun1|scaffold_197890 (4220-4668)
               

               
               1-514, gnl|panTro1|chr20 (51213533-51214059)
               

               
               1-514, gnl|rheMac2|chr19 (54941915-54942448)
               

               
               1-514, gnl|rn3|chr1 (96252235-96251726)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-514, gnl|bosTau2|chr18 (50542715-50543223)
               

               
               1-514, gnl|canFam2|chr1 (110561609-110561078)
               

               
               1-514, gnl|dasNov1|scaffold_96267 (2598-3120)
               

               
               1-514, gnl|hg17|chr19 (53831855-53832381)
               

               
               1-514, gnl|Hg17|chr19 (53832432-53831923)
               

               
               1-514, gnl|loxAfr1|scaffold_20690 (67399-67904)
               

               
               1-514, gnl|mm7|chr7 (41882082-41881567)
               

               
               1-514, gnl|Mm7|chr7 (41881512-41882038)
               

               
               1-514, gnl|monDom2|scaffold_509 (34401-34859)
               

               
               1-514, gnl|oryCun1|scaffold_197890 (4220-4668)
               

               
               1-514, gnl|panTro1|chr20 (51213533-51214059)
               

               
               1-514, gnl|rheMac2|chr19 (54941915-54942448)
               

               
               1-514, gnl|rn3|chr1 (96252235-96251726)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-514, gnl\|bosTau2\|chr18 (50542715-50543223)
	1-514, gnl\|canFam2\|chr1 (110561609-110561078)
	1-514, gnl\|dasNov1\|scaffold_96267 (2598-3120)
	1-514, gnl\|hg17\|chr19 (53831855-53832381)
	1-514, gnl\|Hg17\|chr19 (53832432-53831923)
	1-514, gnl\|loxAfr1\|scaffold_20690 (67399-67904)
	1-514, gnl\|mm7\|chr7 (41882082-41881567)
	1-514, gnl\|Mm7\|chr7 (41881512-41882038)
	1-514, gnl\|monDom2\|scaffold_509 (34401-34859)
	1-514, gnl\|oryCun1\|scaffold_197890 (4220-4668)
	1-514, gnl\|panTro1\|chr20 (51213533-51214059)
	1-514, gnl\|rheMac2\|chr19 (54941915-54942448)
	1-514, gnl\|rn3\|chr1 (96252235-96251726)