Ss1.1-Liv1-LVRM10032E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGGGCAGCCGCGGGGGAAGCTGGGGCAAGATGGCGACAGTAAGAAAGGTGCCGCTACG GAGACTGGTGGGCTTGGCATCCCTTCGGGCTGTCAGCACCTCATCTGTGGGTACTTTCCC AAAGAGGGTGAAAATTGTGGAAGTTGGTCCCCGAGATGGACTACAAAATGAAAAGAATAT CATACCTACTCCGACAAAAATCAAGCTGGTAGACATGCTTTCTGAAACAGGACTCCCCGT TATAGAAGTCACCAGCTTCGTGTCTCCCAAATGGGTTCCCCAGATGGCTGACCACACTGA AGTCTTGAAGGGTATCCAGAAATTTCCTGGCGTCAACTACCCAGTCCTGACACCAAATCT CAGAGCCTTCCAGACAGCGGTTGCTGCTGGAGCCAAGGAAGTGGCGGTCTTTGTAGCTGC CTCTGAGCTCTTCACCAAGAAGAACGTCAACTGCTCCACAGATGAGAGTTTCCAGCGGTG TGACGAAATCTTGAAGGCAGCTCGGGTAGCCGGTATCCCTGTGCGGGGGTATGTCTCCTG TGTGCTTGGATGCCCCTACGAAGGGAAGATCTCCCCAGCCAAAGTAGCCAAGGTCACCAA GAAGATATACTCGATGGGCTGCTACGAGATCTCCCTGGGAGACACCATTGGCGTGGGCAC TCCCGGGCTCATGAAGGCCATGCTGTCTGCTGTCATGCAGGAGGTGCCAGTGTCTGCCCT GGCCGTCCATTGCCATGACACCTACGGCCAGGCACTGGCCAACACCTTGATGGCCCTGCA GATGGGAGTGAGTGTCGTGGACTCTTCTGTAGCTGGACTTGGAGGCTGTCCTTTTGCACA GGGGGCGTCAGGAAACTTGGCCACAGAGGACCTGGTCTACATGCTGGCGGGCATGGGCAT TGACACGGGTGTGAACCTCCAGAAGCTCTTGGAAGCTGGGGCCTTTATCTGTCAAGCCCT GAACAAAAAAACCAGCTCCAGAGTGGCTCAGGCTTCCTGTAAACTGTGAGCCCCTTGCCC CCTGAAGCCTTGGGGATTGCATGGGAATAGGGACACATGTGGATGATTCACGGATGAGCA CATGGAAATGGGAATGAAATGAACAGGTGCAGGCACCTCACCGCCAGCTCTGCCCAGTGG TCTCTCCTGGGGAAAGGAGGCAGATGGGCGCTGCCTGGCCTCAGGCCCTCCCTGTCCAAC CTGAGTGTGAATGAGAGGCTTGGGCAGCTGGAGGTCTCCCTCCCACACGGACCCAAAGGT CCAGGAGCTGAATACCTGTGGGCATTTGGGAACCCAATTCTTGGGCTTGGGTTGATCCTT AAGTCTCATCTCTGGGTGAAACCTGCCAGTTAGCCACTCTCCTCAGCACAATGCTGCCAT ATCCTTGGGGCCATCGCTCTCTGTATAGGGCAAAGGGGCATGGAGGAGTTTTTTCCTCAG CTGGCAGAGGGCATTTGGTGAAGGTGTGAGGGAGCAGTGGTAGCCACCTGCCAACTCCAG CAACTCTGGAAAATCTCCACTTTGAACATGATTTTTGAAAACAGCTTATGTAATTAAAGG TTTAATGCCATAACCAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGGGCAGCCGCGGGGGAAGCTGGGGCAAGATGGCGACAGTAAGAAAGGTGCCGCTACG GAGACTGGTGGGCTTGGCATCCCTTCGGGCTGTCAGCACCTCATCTGTGGGTACTTTCCC AAAGAGGGTGAAAATTGTGGAAGTTGGTCCCCGAGATGGACTACAAAATGAAAAGAATAT CATACCTACTCCGACAAAAATCAAGCTGGTAGACATGCTTTCTGAAACAGGACTCCCCGT TATAGAAGTCACCAGCTTCGTGTCTCCCAAATGGGTTCCCCAGATGGCTGACCACACTGA AGTCTTGAAGGGTATCCAGAAATTTCCTGGCGTCAACTACCCAGTCCTGACACCAAATCT CAGAGCCTTCCAGACAGCGGTTGCTGCTGGAGCCAAGGAAGTGGCGGTCTTTGTAGCTGC CTCTGAGCTCTTCACCAAGAAGAACGTCAACTGCTCCACAGATGAGAGTTTCCAGCGGTG TGACGAAATCTTGAAGGCAGCTCGGGTAGCCGGTATCCCTGTGCGGGGGTATGTCTCCTG TGTGCTTGGATGCCCCTACGAAGGGAAGATCTCCCCAGCCAAAGTAGCCAAGGTCACCAA GAAGATATACTCGATGGGCTGCTACGAGATCTCCCTGGGAGACACCATTGGCGTGGGCAC TCCCGGGCTCATGAAGGCCATGCTGTCTGCTGTCATGCAGGAGGTGCCAGTGTCTGCCCT GGCCGTCCATTGCCATGACACCTACGGCCAGGCACTGGCCAACACCTTGATGGCCCTGCA GATGGGAGTGAGTGTCGTGGACTCTTCTGTAGCTGGACTTGGAGGCTGTCCTTTTGCACA GGGGGCGTCAGGAAACTTGGCCACAGAGGACCTGGTCTACATGCTGGCGGGCATGGGCAT TGACACGGGTGTGAACCTCCAGAAGCTCTTGGAAGCTGGGGCCTTTATCTGTCAAGCCCT GAACAAAAAAACCAGCTCCAGAGTGGCTCAGGCTTCCTGTAAACTGTGAGCCCCTTGCCC CCTGAAGCCTTGGGGATTGCATGGGAATAGGGACACATGTGGATGATTCACGGATGAGCA CATGGAAATGGGAATGAAATGAACAGGTGCAGGCACCTCACCGCCAGCTCTGCCCAGTGG TCTCTCCTGGGGAAAGGAGGCAGATGGGCGCTGCCTGGCCTCAGGCCCTCCCTGTCCAAC CTGAGTGTGAATGAGAGGCTTGGGCAGCTGGAGGTCTCCCTCCCACACGGACCCAAAGGT CCAGGAGCTGAATACCTGTGGGCATTTGGGAACCCAATTCTTGGGCTTGGGTTGATCCTT AAGTCTCATCTCTGGGTGAAACCTGCCAGTTAGCCACTCTCCTCAGCACAATGCTGCCAT ATCCTTGGGGCCATCGCTCTCTGTATAGGGCAAAGGGGCATGGAGGAGTTTTTTCCTCAG CTGGCAGAGGGCATTTGGTGAAGGTGTGAGGGAGCAGTGGTAGCCACCTGCCAACTCCAG CAACTCTGGAAAATCTCCACTTTGAACATGATTTTTGAAAACAGCTTATGTAATTAAAGG TTTAATGCCATAACCAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 411-525, + strand, RNAz p=0.97203 | |
| 627-781, - strand, RNAz p=0.885325 | |
| 1145-1337, + strand, RNAz p=0.956753 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 411-525, + strand, RNAz p=0.97203 | |
| 627-781, - strand, RNAz p=0.885325 | |
| 1145-1337, + strand, RNAz p=0.956753 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC010570, + |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 174-286, gnl|bosTau2|chr2 (82384939-82385051) | |
| 174-286, gnl|canFam2|chr2 (78586782-78586604) | |
| 174-286, gnl|danRer3|chrNA (210516529-210516409) | |
| 174-286, gnl|dasNov1|scaffold_23067 (6880-6773) | |
| 174-286, gnl|echTel1|scaffold_223928 (2579-2757) | |
| 174-286, gnl|fr1|chrUn (279838558-279838685) | |
| 174-286, gnl|galGal2|chr23 (4995714-4995839) | |
| 174-286, gnl|hg17|chr1 (23889262-23889431) | |
| 174-286, gnl|Hg17|chr1 (23889381-23889269) | |
| 174-286, gnl|loxAfr1|scaffold_807 (92532-92352) | |
| 174-286, gnl|mm7|chr4 (135330926-135330751) | |
| 174-286, gnl|Mm7|chr4 (135330806-135330918) | |
| 174-286, gnl|monDom2|scaffold_91 (334920-335058) | |
| 174-286, gnl|oryCun1|scaffold_156173 (649-812) | |
| 174-286, gnl|panTro1|chr1 (24268012-24268182) | |
| 174-286, gnl|rheMac2|chr1 (26426545-26426710) | |
| 174-286, gnl|rn3|chr5 (154745954-154745779) | |
| 174-286, gnl|tetNig1|chr10 (3072818-3072680) | |
| 174-286, gnl|xenTro1|scaffold_62 (2576202-2576331) | |
| 379-536, gnl|bosTau2|chr2 (82387778-82387935) | |
| 379-536, gnl|canFam2|chr2 (78589236-78589061) | |
| 379-536, gnl|danRer3|chrNA (210519151-210518968) | |
| 379-536, gnl|dasNov1|scaffold_23067 (7127-6979) | |
| 379-536, gnl|echTel1|scaffold_223928 (716-897) | |
| 379-536, gnl|fr1|chrUn (279837980-279838143) | |
| 379-536, gnl|galGal2|chr23 (4994763-4994930) | |
| 379-536, gnl|hg17|chr1 (23885973-23886152) | |
| 379-536, gnl|Hg17|chr1 (23886135-23885978) | |
| 379-536, gnl|loxAfr1|scaffold_69499 (5005-4840) | |
| 379-536, gnl|mm7|chr4 (135334182-135334009) | |
| 379-536, gnl|Mm7|chr4 (135334023-135334180) | |
| 379-536, gnl|monDom2|scaffold_91 (332437-332609) | |
| 379-536, gnl|oryCun1|scaffold_182196 (29270-29096) | |
| 379-536, gnl|panTro1|chr1 (24264690-24264869) | |
| 379-536, gnl|rheMac2|chr1 (26423237-26423416) | |
| 379-536, gnl|rn3|chr5 (154748657-154748479) | |
| 379-536, gnl|tetNig1|chr10 (3073271-3073114) | |
| 379-536, gnl|xenTro1|scaffold_62 (2574674-2574837) | |
| 588-781, gnl|bosTau2|chr2 (82393403-82393596) | |
| 588-781, gnl|Hg17|chr1 (23880124-23879931) | |
| 588-781, gnl|Mm7|chr4 (135338409-135338602) | |
| 907-1570, gnl|bosTau2|chr2 (82395989-82396660) | |
| 907-1570, gnl|Hg17|chr1 (23874361-23873689) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 174-286, gnl|bosTau2|chr2 (82384939-82385051) | |
| 174-286, gnl|canFam2|chr2 (78586782-78586604) | |
| 174-286, gnl|danRer3|chrNA (210516529-210516409) | |
| 174-286, gnl|dasNov1|scaffold_23067 (6880-6773) | |
| 174-286, gnl|echTel1|scaffold_223928 (2579-2757) | |
| 174-286, gnl|fr1|chrUn (279838558-279838685) | |
| 174-286, gnl|galGal2|chr23 (4995714-4995839) | |
| 174-286, gnl|hg17|chr1 (23889262-23889431) | |
| 174-286, gnl|Hg17|chr1 (23889381-23889269) | |
| 174-286, gnl|loxAfr1|scaffold_807 (92532-92352) | |
| 174-286, gnl|mm7|chr4 (135330926-135330751) | |
| 174-286, gnl|Mm7|chr4 (135330806-135330918) | |
| 174-286, gnl|monDom2|scaffold_91 (334920-335058) | |
| 174-286, gnl|oryCun1|scaffold_156173 (649-812) | |
| 174-286, gnl|panTro1|chr1 (24268012-24268182) | |
| 174-286, gnl|rheMac2|chr1 (26426545-26426710) | |
| 174-286, gnl|rn3|chr5 (154745954-154745779) | |
| 174-286, gnl|tetNig1|chr10 (3072818-3072680) | |
| 174-286, gnl|xenTro1|scaffold_62 (2576202-2576331) | |
| 379-536, gnl|bosTau2|chr2 (82387778-82387935) | |
| 379-536, gnl|canFam2|chr2 (78589236-78589061) | |
| 379-536, gnl|danRer3|chrNA (210519151-210518968) | |
| 379-536, gnl|dasNov1|scaffold_23067 (7127-6979) | |
| 379-536, gnl|echTel1|scaffold_223928 (716-897) | |
| 379-536, gnl|fr1|chrUn (279837980-279838143) | |
| 379-536, gnl|galGal2|chr23 (4994763-4994930) | |
| 379-536, gnl|hg17|chr1 (23885973-23886152) | |
| 379-536, gnl|Hg17|chr1 (23886135-23885978) | |
| 379-536, gnl|loxAfr1|scaffold_69499 (5005-4840) | |
| 379-536, gnl|mm7|chr4 (135334182-135334009) | |
| 379-536, gnl|Mm7|chr4 (135334023-135334180) | |
| 379-536, gnl|monDom2|scaffold_91 (332437-332609) | |
| 379-536, gnl|oryCun1|scaffold_182196 (29270-29096) | |
| 379-536, gnl|panTro1|chr1 (24264690-24264869) | |
| 379-536, gnl|rheMac2|chr1 (26423237-26423416) | |
| 379-536, gnl|rn3|chr5 (154748657-154748479) | |
| 379-536, gnl|tetNig1|chr10 (3073271-3073114) | |
| 379-536, gnl|xenTro1|scaffold_62 (2574674-2574837) | |
| 588-781, gnl|bosTau2|chr2 (82393403-82393596) | |
| 588-781, gnl|Hg17|chr1 (23880124-23879931) | |
| 588-781, gnl|Mm7|chr4 (135338409-135338602) | |
| 907-1570, gnl|bosTau2|chr2 (82395989-82396660) | |
| 907-1570, gnl|Hg17|chr1 (23874361-23873689) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cli (0.305623) | |
| cga (0.279096) | |
| med (0.232504) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.305623) | |
| cga (0.279096) | |
| med (0.232504) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eje (0.0988338) |