Non-Coding RNA Search

Ss1.1-Liv1-LVRM10052C02.5

Sequence:


               
               GAACCCAGGCGAGGGCAGAGCCTGGGCAGCGAAGAATCCCGGCCCTGCTGTCCCCGCAGA
GTGGAGGCACCATGCCCTCACCCATCAGGACACCAGACATCATCGCCAGACGACCTGCAG
CAATGGCTGTGGCCACCCCCTGACCCCCAGAGGAAAAGCCCAGGCTGGGCGAGCCAGACC
TGCCCCCACAGCCATGCACCCCTGTTGCTGCTCCAAACCTCCCCTGATCCCAAGCCCAAG
ATGACACCCAACAGCACCAGGGAGGTGGCCAGCCCTGTTCCTTCAGGGACCCTGGGCCTC
TCCCTGGCCCTGGCGAGCCTCATCGTTGCTGCCAACCTGCTCCTGGCCCTGGGCATCGCT
GGGGACCGCCGCCTGCGCAGCCCGCCTGCCGGCTGCTTCTTCCTGAGTCTGCTCCTGGCT
GGACTGCTCACTGGGCTGGCACTGCCCACGCTGCCGGGCCTGTGGAACCAGAGCCGCCGG
GGCTACTGGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCCAGGCGAGGGCAGAGCCTGGGCAGCGAAGAATCCCGGCCCTGCTGTCCCCGCAGA
GTGGAGGCACCATGCCCTCACCCATCAGGACACCAGACATCATCGCCAGACGACCTGCAG
CAATGGCTGTGGCCACCCCCTGACCCCCAGAGGAAAAGCCCAGGCTGGGCGAGCCAGACC
TGCCCCCACAGCCATGCACCCCTGTTGCTGCTCCAAACCTCCCCTGATCCCAAGCCCAAG
ATGACACCCAACAGCACCAGGGAGGTGGCCAGCCCTGTTCCTTCAGGGACCCTGGGCCTC
TCCCTGGCCCTGGCGAGCCTCATCGTTGCTGCCAACCTGCTCCTGGCCCTGGGCATCGCT
GGGGACCGCCGCCTGCGCAGCCCGCCTGCCGGCTGCTTCTTCCTGAGTCTGCTCCTGGCT
GGACTGCTCACTGGGCTGGCACTGCCCACGCTGCCGGGCCTGTGGAACCAGAGCCGCCGG
GGCTACTGGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-350, - strand, RNAz p=0.985762

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-350, - strand, RNAz p=0.985762

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               232-450, - strand, RNAmicro p=0.999993
               

               
               233-330, + strand, RNAmicro p=0.985551

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               232-450, - strand, RNAmicro p=0.999993
               

               
               233-330, + strand, RNAmicro p=0.985551

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               192-492, gnl|bosTau2|chr2 (64623338-64623638)
               

               
               192-492, gnl|Hg17|chr2 (218952907-218953204)
               

               
               192-492, gnl|Mm7|chr1 (74518227-74518521)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-492, gnl|bosTau2|chr2 (64623338-64623638)
               

               
               192-492, gnl|Hg17|chr2 (218952907-218953204)
               

               
               192-492, gnl|Mm7|chr1 (74518227-74518521)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	232-450, - strand, RNAmicro p=0.999993
	233-330, + strand, RNAmicro p=0.985551

	192-492, gnl\|bosTau2\|chr2 (64623338-64623638)
	192-492, gnl\|Hg17\|chr2 (218952907-218953204)
	192-492, gnl\|Mm7\|chr1 (74518227-74518521)