Non-Coding RNA Search

Ss1.1-Liv1-LVRM10054C05.5

Sequence:


               
               AGTGCTCCCGGGCGCCTTTTCGCCTGTGTCTTTCTCAGTTTCGCGTCTGGGGTGGGTCTC
CGGTGGGTTCTCGGGTCTCCGGAGTAGCGGGCGGGCCCAGGAGGGGAGATACGTTGGCTT
CATCCTCTGCCGTCCTCCTCGCCCTAGTTGTGAGGACCCGGGAGCCCCCGGGCCGGTGGG
GACTGAGCTCTCGGGCTGGAGTCCGCATCTTCACTTTGTGTCAGACCCTACGGGGACTAG
AGAAGCAGGAATCTCGGTGGAGGCACTCGCTCCCGGCCCCCTGTTTTGCCGGGGGGACCC
CGGAACCCTATCGAGGAGGCAGGTCACTTCCTGCTTCCTGGTCCCCGCGGTGGCTTCGTG
GCCAGGAGTGCGGAGACGCCTCCTATTTCTCCGCCTCCGACCCGAAGAGTGGAAACTGAG
GCAGATCGGAGGTGGGGCTGTCACATGGGGATCGAAGAGGGAGAATTTCTGTTCGTGACA
AAACCAAACTTGTTTGGAGTTGAGGATGAGGACTGGGCAGGTTAGCTGGACTTGTCCATC
GGTCGGAAAGCCAGCCCCTCTGACCAGAGCGGAGCCTTGGTCGGGAGCCCAGCCCCTCCG
AAGCCCAAGCTATAGAAGTCGGCCCTTCTGAACAGTGGTGAGCGGAGCGGAGGCCCCGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCTCCCGGGCGCCTTTTCGCCTGTGTCTTTCTCAGTTTCGCGTCTGGGGTGGGTCTC
CGGTGGGTTCTCGGGTCTCCGGAGTAGCGGGCGGGCCCAGGAGGGGAGATACGTTGGCTT
CATCCTCTGCCGTCCTCCTCGCCCTAGTTGTGAGGACCCGGGAGCCCCCGGGCCGGTGGG
GACTGAGCTCTCGGGCTGGAGTCCGCATCTTCACTTTGTGTCAGACCCTACGGGGACTAG
AGAAGCAGGAATCTCGGTGGAGGCACTCGCTCCCGGCCCCCTGTTTTGCCGGGGGGACCC
CGGAACCCTATCGAGGAGGCAGGTCACTTCCTGCTTCCTGGTCCCCGCGGTGGCTTCGTG
GCCAGGAGTGCGGAGACGCCTCCTATTTCTCCGCCTCCGACCCGAAGAGTGGAAACTGAG
GCAGATCGGAGGTGGGGCTGTCACATGGGGATCGAAGAGGGAGAATTTCTGTTCGTGACA
AAACCAAACTTGTTTGGAGTTGAGGATGAGGACTGGGCAGGTTAGCTGGACTTGTCCATC
GGTCGGAAAGCCAGCCCCTCTGACCAGAGCGGAGCCTTGGTCGGGAGCCCAGCCCCTCCG
AAGCCCAAGCTATAGAAGTCGGCCCTTCTGAACAGTGGTGAGCGGAGCGGAGGCCCCGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               121-399, - strand, RNAz p=0.989804

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-399, - strand, RNAz p=0.989804

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-660, gnl|bosTau2|chr24 (26495113-26494450)
               

               
               1-660, gnl|Hg17|chr9 (86198846-86198196)
               

               
               1-660, gnl|Mm7|chr13 (58931502-58930943)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr24 (26495113-26494450)
               

               
               1-660, gnl|Hg17|chr9 (86198846-86198196)
               

               
               1-660, gnl|Mm7|chr13 (58931502-58930943)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               spl (0.143184)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               cbl (0.114797)

	1-660, gnl\|bosTau2\|chr24 (26495113-26494450)
	1-660, gnl\|Hg17\|chr9 (86198846-86198196)
	1-660, gnl\|Mm7\|chr13 (58931502-58930943)