Non-Coding RNA Search

Ss1.1-Liv1-LVRM10055D02.5

Sequence:


               
               CACTGTGCTGCATGGTGGTGTGGTTTGGAGTGAACTTCTCCTATTACGGCCTGAGCCTGG
ATGTGTCGGGTCTGGGGCTGAACGTGTACCAGACGCAGCTGCTATTTGGGGCAGTGGAGC
TGCCCTCCAAACTGTTGGTCTATCTGTCCGTGCGCCACGCGGGACGCCGGCTCACGCTGG
CCGGAACGCTGCTGGGCACCTCCCTCTCCTTGGGCTTCAGGCTGCTGGTGTCCTCTGAGA
TGAAATCCTGGAGCACTGCCCTGGCGGTGTTGGGGAAGGGTTTTTCTGAAGCTGCCTTCA
CCACTGCCTACCTGTTCACATCAGAGCTGTACCCTACTGTGCTCAGACAGACAGGGATGG
GGCTGACTGCACTGGTGGGCCGGTTGGGAGGCTCTTTGGCCCCACTGGCAGCCTTGCTGG
ATGGAGTATGGCTGTCACTGCCCAAGCTCGCTTATGGGGGGATCGCCTTGCTGGCTGCCT
GCACTGCCCTCCTGCTACCAGAGACAAAGCAGGCACAGCTGCCAGAGACCATCCAAGACG
TGGAGAGGAAGAGTGCCCCATCCAGCCTTCAGGAGGAAGAGATGCCCATGAAGCAGGTCC
AGGACTGAGTGGTATCAAGGGCAGGCCCTCCGCACAAGTTCTGCAGCAGGGGCTGAGAGA
ACAGAGGGCAGGCCCCGTGACCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGTGCTGCATGGTGGTGTGGTTTGGAGTGAACTTCTCCTATTACGGCCTGAGCCTGG
ATGTGTCGGGTCTGGGGCTGAACGTGTACCAGACGCAGCTGCTATTTGGGGCAGTGGAGC
TGCCCTCCAAACTGTTGGTCTATCTGTCCGTGCGCCACGCGGGACGCCGGCTCACGCTGG
CCGGAACGCTGCTGGGCACCTCCCTCTCCTTGGGCTTCAGGCTGCTGGTGTCCTCTGAGA
TGAAATCCTGGAGCACTGCCCTGGCGGTGTTGGGGAAGGGTTTTTCTGAAGCTGCCTTCA
CCACTGCCTACCTGTTCACATCAGAGCTGTACCCTACTGTGCTCAGACAGACAGGGATGG
GGCTGACTGCACTGGTGGGCCGGTTGGGAGGCTCTTTGGCCCCACTGGCAGCCTTGCTGG
ATGGAGTATGGCTGTCACTGCCCAAGCTCGCTTATGGGGGGATCGCCTTGCTGGCTGCCT
GCACTGCCCTCCTGCTACCAGAGACAAAGCAGGCACAGCTGCCAGAGACCATCCAAGACG
TGGAGAGGAAGAGTGCCCCATCCAGCCTTCAGGAGGAAGAGATGCCCATGAAGCAGGTCC
AGGACTGAGTGGTATCAAGGGCAGGCCCTCCGCACAAGTTCTGCAGCAGGGGCTGAGAGA
ACAGAGGGCAGGCCCCGTGACCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5T046_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T046_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               358-469, + strand, RNAz p=0.641516

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-469, + strand, RNAz p=0.641516

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               22-233, gnl|bosTau2|chr23 (17164603-17164814)
               

               
               22-233, gnl|Hg17|chr6 (43377915-43378126)
               

               
               22-233, gnl|Mm7|chr17 (44562261-44562050)
               


               
               344-553, gnl|bosTau2|chr23 (17165835-17166044)
               

               
               344-553, gnl|canFam2|chr12 (14790610-14790845)
               

               
               344-553, gnl|danRer3|chr17 (20234541-20234755)
               

               
               344-553, gnl|dasNov1|scaffold_29976 (80663-80901)
               

               
               344-553, gnl|echTel1|scaffold_119807 (363-121)
               

               
               344-553, gnl|fr1|chrUn (61591741-61591501)
               

               
               344-553, gnl|hg17|chr6 (43379729-43379971)
               

               
               344-553, gnl|Hg17|chr6 (43379751-43379960)
               

               
               344-553, gnl|loxAfr1|scaffold_91327 (3989-3746)
               

               
               344-553, gnl|mm7|chr17 (44561374-44561135)
               

               
               344-553, gnl|Mm7|chr17 (44561353-44561144)
               

               
               344-553, gnl|monDom2|scaffold_0 (198260092-198259851)
               

               
               344-553, gnl|oryCun1|scaffold_179605 (2813-3053)
               

               
               344-553, gnl|panTro1|chr5 (43978599-43978843)
               

               
               344-553, gnl|rheMac2|chr4 (43200011-43200253)
               

               
               344-553, gnl|rn3|chr9 (9936654-9936893)
               

               
               344-553, gnl|tetNig1|chrUn_random (47794062-47794276)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-233, gnl|bosTau2|chr23 (17164603-17164814)
               

               
               22-233, gnl|Hg17|chr6 (43377915-43378126)
               

               
               22-233, gnl|Mm7|chr17 (44562261-44562050)
               


               
               344-553, gnl|bosTau2|chr23 (17165835-17166044)
               

               
               344-553, gnl|canFam2|chr12 (14790610-14790845)
               

               
               344-553, gnl|danRer3|chr17 (20234541-20234755)
               

               
               344-553, gnl|dasNov1|scaffold_29976 (80663-80901)
               

               
               344-553, gnl|echTel1|scaffold_119807 (363-121)
               

               
               344-553, gnl|fr1|chrUn (61591741-61591501)
               

               
               344-553, gnl|hg17|chr6 (43379729-43379971)
               

               
               344-553, gnl|Hg17|chr6 (43379751-43379960)
               

               
               344-553, gnl|loxAfr1|scaffold_91327 (3989-3746)
               

               
               344-553, gnl|mm7|chr17 (44561374-44561135)
               

               
               344-553, gnl|Mm7|chr17 (44561353-44561144)
               

               
               344-553, gnl|monDom2|scaffold_0 (198260092-198259851)
               

               
               344-553, gnl|oryCun1|scaffold_179605 (2813-3053)
               

               
               344-553, gnl|panTro1|chr5 (43978599-43978843)
               

               
               344-553, gnl|rheMac2|chr4 (43200011-43200253)
               

               
               344-553, gnl|rn3|chr9 (9936654-9936893)
               

               
               344-553, gnl|tetNig1|chrUn_random (47794062-47794276)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fli (0.202881)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)

	22-233, gnl\|bosTau2\|chr23 (17164603-17164814)
	22-233, gnl\|Hg17\|chr6 (43377915-43378126)
	22-233, gnl\|Mm7\|chr17 (44562261-44562050)

	344-553, gnl\|bosTau2\|chr23 (17165835-17166044)
	344-553, gnl\|canFam2\|chr12 (14790610-14790845)
	344-553, gnl\|danRer3\|chr17 (20234541-20234755)
	344-553, gnl\|dasNov1\|scaffold_29976 (80663-80901)
	344-553, gnl\|echTel1\|scaffold_119807 (363-121)
	344-553, gnl\|fr1\|chrUn (61591741-61591501)
	344-553, gnl\|hg17\|chr6 (43379729-43379971)
	344-553, gnl\|Hg17\|chr6 (43379751-43379960)
	344-553, gnl\|loxAfr1\|scaffold_91327 (3989-3746)
	344-553, gnl\|mm7\|chr17 (44561374-44561135)
	344-553, gnl\|Mm7\|chr17 (44561353-44561144)
	344-553, gnl\|monDom2\|scaffold_0 (198260092-198259851)
	344-553, gnl\|oryCun1\|scaffold_179605 (2813-3053)
	344-553, gnl\|panTro1\|chr5 (43978599-43978843)
	344-553, gnl\|rheMac2\|chr4 (43200011-43200253)
	344-553, gnl\|rn3\|chr9 (9936654-9936893)
	344-553, gnl\|tetNig1\|chrUn_random (47794062-47794276)