Ss1.1-Liv1-LVRM10055D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGAGTCTGCATGGCCTGCACAAGCTCTACTCTCTGGTCAACTTGGATCTCAGCAACAA CAGAATCGAGCAGATGGAGGAGGTCAGGAGCATTGGCAGCCTCCCGTGTCTGGAGCACGT GGCTCTGCTGAACAACCCTCTGAGCATCATCCCAGACTACCGGACCAAGGTGCTGGCTCA GTTTGGAGAGCGGGCATCCGAGGTCTGTCTGGACAACACAGTGACCACAGAGAAGGAGTT GGACACAGTGGAAGTGCTAAAAGCGATTCAGAAAGCCAAGGAGGTCAAGTCCAAACTAAG CAACACTGAGAAGAAGGTCAGTGAGGATTCCAGGCTCTCTGCTGCCACCTGCATCAGACC CAGTGGCTCCCCTCCCACGGTGGCTCCCACCTCAGCCTCCCTGCCCCAGCCTATTCTCTC CAACCAAGGCATCCTCGGAGATGAGTGAGTGAAGCAGGTCCCATGAGTGACTGCTGGCCC GGCCCCCACGGAAGAGGGGAGGGTGTGCCGTCCCAAGTGGAGCCGAGGCTCGGGACACAC AGGAAAGAACGCCGCCCGCCCGGGCTCCTGGAGATGGAGAACTTGGTGTGAGGTCTTGGG AAAACAGTTTGACCCTATGTTTCAAGAGCCAGAAAAACATTCCTTCCCCTGGACCTGATA ACCCCACTGGTGGGGATTTTATCTTAGCAGAAGATAAGGGGCAGGGGGAGGTGCAATGCT CACTGCAGTACTACTTATGCTAGCAAAACATGGGATGTGACAAACATTAACGTGTGTGAT TAAGGGGTGGTCTGAAGTACGTTGCAGCTGCTGCATCCAAGAGAGGAAGGCTGGCTGAGA AGGGAGGAGCACGGGGTTGAGGCAGAGAGCCTGCCACAGGACAGCACCCCAGGGTTCCAA CCGTGAGGCAGGAATGAGACTTCCTGAGGACAGACAGTGGCATTAGTGCTGGAGTAGTCA TCCGATTGCATTTGTAACACTCTTGACCGAGAAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGAGTCTGCATGGCCTGCACAAGCTCTACTCTCTGGTCAACTTGGATCTCAGCAACAA CAGAATCGAGCAGATGGAGGAGGTCAGGAGCATTGGCAGCCTCCCGTGTCTGGAGCACGT GGCTCTGCTGAACAACCCTCTGAGCATCATCCCAGACTACCGGACCAAGGTGCTGGCTCA GTTTGGAGAGCGGGCATCCGAGGTCTGTCTGGACAACACAGTGACCACAGAGAAGGAGTT GGACACAGTGGAAGTGCTAAAAGCGATTCAGAAAGCCAAGGAGGTCAAGTCCAAACTAAG CAACACTGAGAAGAAGGTCAGTGAGGATTCCAGGCTCTCTGCTGCCACCTGCATCAGACC CAGTGGCTCCCCTCCCACGGTGGCTCCCACCTCAGCCTCCCTGCCCCAGCCTATTCTCTC CAACCAAGGCATCCTCGGAGATGAGTGAGTGAAGCAGGTCCCATGAGTGACTGCTGGCCC GGCCCCCACGGAAGAGGGGAGGGTGTGCCGTCCCAAGTGGAGCCGAGGCTCGGGACACAC AGGAAAGAACGCCGCCCGCCCGGGCTCCTGGAGATGGAGAACTTGGTGTGAGGTCTTGGG AAAACAGTTTGACCCTATGTTTCAAGAGCCAGAAAAACATTCCTTCCCCTGGACCTGATA ACCCCACTGGTGGGGATTTTATCTTAGCAGAAGATAAGGGGCAGGGGGAGGTGCAATGCT CACTGCAGTACTACTTATGCTAGCAAAACATGGGATGTGACAAACATTAACGTGTGTGAT TAAGGGGTGGTCTGAAGTACGTTGCAGCTGCTGCATCCAAGAGAGGAAGGCTGGCTGAGA AGGGAGGAGCACGGGGTTGAGGCAGAGAGCCTGCCACAGGACAGCACCCCAGGGTTCCAA CCGTGAGGCAGGAATGAGACTTCCTGAGGACAGACAGTGGCATTAGTGCTGGAGTAGTCA TCCGATTGCATTTGTAACACTCTTGACCGAGAAAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 579-733, + strand, RNAz p=0.971183 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 579-733, + strand, RNAz p=0.971183 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 71-204, gnl|bosTau2|chr22 (37058231-37058364) | |
| 71-204, gnl|canFam2|chr20 (40289228-40289091) | |
| 71-204, gnl|danRer3|chr6 (30488317-30488184) | |
| 71-204, gnl|dasNov1|scaffold_55618 (6310-6460) | |
| 71-204, gnl|echTel1|scaffold_183822 (4101-4239) | |
| 71-204, gnl|fr1|chrUn (234995581-234995448) | |
| 71-204, gnl|galGal2|chr12 (504862-505000) | |
| 71-204, gnl|hg17|chr3 (52487503-52487641) | |
| 71-204, gnl|Hg17|chr3 (52487502-52487635) | |
| 71-204, gnl|loxAfr1|scaffold_19767 (14387-14249) | |
| 71-204, gnl|mm7|chr14 (28616538-28616400) | |
| 71-204, gnl|Mm7|chr14 (28616537-28616404) | |
| 71-204, gnl|monDom2|scaffold_5 (70569663-70569525) | |
| 71-204, gnl|oryCun1|scaffold_198307 (13367-13229) | |
| 71-204, gnl|panTro1|chr2 (54104472-54104610) | |
| 71-204, gnl|rheMac2|chr2 (83897221-83897083) | |
| 71-204, gnl|rn3|chr16 (6617520-6617382) | |
| 71-204, gnl|tetNig1|chrUn_random (121393216-121393349) | |
| 71-204, gnl|xenTro1|scaffold_1195 (67766-67904) | |
| 422-993, gnl|bosTau2|chr22 (37060742-37061309) | |
| 422-993, gnl|Hg17|chr3 (52489928-52490504) | |
| 422-993, gnl|Mm7|chr14 (28614051-28613490) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-204, gnl|bosTau2|chr22 (37058231-37058364) | |
| 71-204, gnl|canFam2|chr20 (40289228-40289091) | |
| 71-204, gnl|danRer3|chr6 (30488317-30488184) | |
| 71-204, gnl|dasNov1|scaffold_55618 (6310-6460) | |
| 71-204, gnl|echTel1|scaffold_183822 (4101-4239) | |
| 71-204, gnl|fr1|chrUn (234995581-234995448) | |
| 71-204, gnl|galGal2|chr12 (504862-505000) | |
| 71-204, gnl|hg17|chr3 (52487503-52487641) | |
| 71-204, gnl|Hg17|chr3 (52487502-52487635) | |
| 71-204, gnl|loxAfr1|scaffold_19767 (14387-14249) | |
| 71-204, gnl|mm7|chr14 (28616538-28616400) | |
| 71-204, gnl|Mm7|chr14 (28616537-28616404) | |
| 71-204, gnl|monDom2|scaffold_5 (70569663-70569525) | |
| 71-204, gnl|oryCun1|scaffold_198307 (13367-13229) | |
| 71-204, gnl|panTro1|chr2 (54104472-54104610) | |
| 71-204, gnl|rheMac2|chr2 (83897221-83897083) | |
| 71-204, gnl|rn3|chr16 (6617520-6617382) | |
| 71-204, gnl|tetNig1|chrUn_random (121393216-121393349) | |
| 71-204, gnl|xenTro1|scaffold_1195 (67766-67904) | |
| 422-993, gnl|bosTau2|chr22 (37060742-37061309) | |
| 422-993, gnl|Hg17|chr3 (52489928-52490504) | |
| 422-993, gnl|Mm7|chr14 (28614051-28613490) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |