Non-Coding RNA Search

Ss1.1-Liv1-LVRM10056G02.5

Sequence:


               
               AGTTGCTGCTGGGACGAGCCGGTGCGCATCGCTGTGCGCGGCCTGGCTCCGGAGCAGCGG
GTCACGTTGCGCTCTTCCCTGCGCGACGAGAAGGGCGCGCTTTTCAGGGCCCACGCGCGC
TACTGCGCCGACGCCAACGGCCAGCTGGACCTGGCGCGCGCGCCCGCGCTGGGCGGCAGC
TTCGTGGGGCTCGAGCCCATGGGGCTCTTCTGGGCTCTGGAGCCCGAAAAGCCTTTATGG
CGGTTTGTGAAGCGGGACGTGCAGACGCCCTTCGCCGTGGAGCTGGAGGTGTTCGACGGC
CACGAGCCCGAGGCAGAGCGACTCCTGGGCCGGGCTGTGCACGAGCGCGACTTCCTGCCG
CCCGGGGTTCGGCGCGAGCCGGTGCGCGCGGGCCGGGTGCGCGCCACGCTTTTCCTGCCT
CCAGGACCCGGACCTTTCCCAGGGATCATTGACATCTTTGGTATGGGAGGAGGCCTGTTG
GAATATCGGGCCAGCCTTCTAGCTGGCCATGGCTTTGCTACCTTGGCACTAGCTTATTAT
GACTTTGAAGATCTCCCCAAGAAATTTGACGCCATACATCTGGACTACTTTGAAGAAGCC
CTGTGCTACATGCTTCAACACACCCAGGTAAAGGGCCCAGGCATTGGGCTTCTGGGAATT
TCTTTAGGGGCTGATATTTGTCTCTCCATGGCCTCATTTTTGAAGAATATCTCAGCCACA
GTTTCCATCAATGGATCTGGATTCAGTGAGAACAAACCCATATACTACAAGGAGACTAGC
ATCCCACCATTGGGCCATGACCTGAGGAGAATGAAGGTAGCTTTCTCAGGCCTCCTGGAC
ATTGTGGATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGCTGCTGGGACGAGCCGGTGCGCATCGCTGTGCGCGGCCTGGCTCCGGAGCAGCGG
GTCACGTTGCGCTCTTCCCTGCGCGACGAGAAGGGCGCGCTTTTCAGGGCCCACGCGCGC
TACTGCGCCGACGCCAACGGCCAGCTGGACCTGGCGCGCGCGCCCGCGCTGGGCGGCAGC
TTCGTGGGGCTCGAGCCCATGGGGCTCTTCTGGGCTCTGGAGCCCGAAAAGCCTTTATGG
CGGTTTGTGAAGCGGGACGTGCAGACGCCCTTCGCCGTGGAGCTGGAGGTGTTCGACGGC
CACGAGCCCGAGGCAGAGCGACTCCTGGGCCGGGCTGTGCACGAGCGCGACTTCCTGCCG
CCCGGGGTTCGGCGCGAGCCGGTGCGCGCGGGCCGGGTGCGCGCCACGCTTTTCCTGCCT
CCAGGACCCGGACCTTTCCCAGGGATCATTGACATCTTTGGTATGGGAGGAGGCCTGTTG
GAATATCGGGCCAGCCTTCTAGCTGGCCATGGCTTTGCTACCTTGGCACTAGCTTATTAT
GACTTTGAAGATCTCCCCAAGAAATTTGACGCCATACATCTGGACTACTTTGAAGAAGCC
CTGTGCTACATGCTTCAACACACCCAGGTAAAGGGCCCAGGCATTGGGCTTCTGGGAATT
TCTTTAGGGGCTGATATTTGTCTCTCCATGGCCTCATTTTTGAAGAATATCTCAGCCACA
GTTTCCATCAATGGATCTGGATTCAGTGAGAACAAACCCATATACTACAAGGAGACTAGC
ATCCCACCATTGGGCCATGACCTGAGGAGAATGAAGGTAGCTTTCTCAGGCCTCCTGGAC
ATTGTGGATATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q91YQ6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q91YQ6_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               624-742, + strand, RNAz p=0.623901

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               624-742, + strand, RNAz p=0.623901

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-443, gnl|bosTau2|chr10 (60210950-60211391)
               

               
               4-443, gnl|Hg17|chr14 (73149065-73149502)
               

               
               4-443, gnl|Mm7|chr12 (82096944-82097393)
               


               
               624-852, gnl|bosTau2|chr10 (60347837-60348065)
               

               
               624-852, gnl|Hg17|chr14 (73131502-73131730)
               

               
               624-852, gnl|Mm7|chr12 (82039224-82039452)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-443, gnl|bosTau2|chr10 (60210950-60211391)
               

               
               4-443, gnl|Hg17|chr14 (73149065-73149502)
               

               
               4-443, gnl|Mm7|chr12 (82096944-82097393)
               


               
               624-852, gnl|bosTau2|chr10 (60347837-60348065)
               

               
               624-852, gnl|Hg17|chr14 (73131502-73131730)
               

               
               624-852, gnl|Mm7|chr12 (82039224-82039452)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fli (0.202881)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

	4-443, gnl\|bosTau2\|chr10 (60210950-60211391)
	4-443, gnl\|Hg17\|chr14 (73149065-73149502)
	4-443, gnl\|Mm7\|chr12 (82096944-82097393)

	624-852, gnl\|bosTau2\|chr10 (60347837-60348065)
	624-852, gnl\|Hg17\|chr14 (73131502-73131730)
	624-852, gnl\|Mm7\|chr12 (82039224-82039452)