Ss1.1-Liv1-LVRM10056G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACCCAGCCCTCTGGGAATCCAGGATGGGGGCCTCGGCTGGGGCCCTGCCCTCCCTACT GCTGGGAATTCTGCTTACGTCCATCCTGGGGAGCCTGGGGGCCAACCCCGGCCTGGTTGC CAGGATCACCAACAAGGGCTTGGAGTACGTGGCCAGAGAGGGGGTGGCGACTCTGCAGAG TAAGCTGCACGAAGTCACACTCCCCGACTTCAATGGGGACTTCAAGATCAAATACATGGG CCGAGGGCACTATGAGTTCCACAGCCTGGACATCCACAGCTGTGAGCTGCTCGGCTCCAC TCTGACGCCTCTCCCCGGCCAGGGCCTGTATTTGGCCATCTCCGACTCCTCCATCAGGGT CAAGGGCAAGTGGAAAGTGCGCAAGGGGATACTGAAACTAGACGGCTCCTTTGACGTGAA GGTTAAAGGCATCACCATTTCAGTCAATCTTCTCCTGGGCAGTGGGTCCTCCGGGAGGCC AACGGTCGCAGTCTCCAGCTGCAGCAGCCACATCGACGATGTGGAGACGCACATGTCGGG AGATCTGAGCTGGCTGCTGAATCTCTTCCACAACCAGATCGAGTCCAGGTTCCGAAGAAC ATTGGAGAGCAAGATTTGTGAAGAGATCCAGGATTTGGTGGCCTCTGACCTACAGCCTTA CCTCCAAACTGTGCCAGTCACGACAGAGATTGACCACCTTGCTGGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACCCAGCCCTCTGGGAATCCAGGATGGGGGCCTCGGCTGGGGCCCTGCCCTCCCTACT GCTGGGAATTCTGCTTACGTCCATCCTGGGGAGCCTGGGGGCCAACCCCGGCCTGGTTGC CAGGATCACCAACAAGGGCTTGGAGTACGTGGCCAGAGAGGGGGTGGCGACTCTGCAGAG TAAGCTGCACGAAGTCACACTCCCCGACTTCAATGGGGACTTCAAGATCAAATACATGGG CCGAGGGCACTATGAGTTCCACAGCCTGGACATCCACAGCTGTGAGCTGCTCGGCTCCAC TCTGACGCCTCTCCCCGGCCAGGGCCTGTATTTGGCCATCTCCGACTCCTCCATCAGGGT CAAGGGCAAGTGGAAAGTGCGCAAGGGGATACTGAAACTAGACGGCTCCTTTGACGTGAA GGTTAAAGGCATCACCATTTCAGTCAATCTTCTCCTGGGCAGTGGGTCCTCCGGGAGGCC AACGGTCGCAGTCTCCAGCTGCAGCAGCCACATCGACGATGTGGAGACGCACATGTCGGG AGATCTGAGCTGGCTGCTGAATCTCTTCCACAACCAGATCGAGTCCAGGTTCCGAAGAAC ATTGGAGAGCAAGATTTGTGAAGAGATCCAGGATTTGGTGGCCTCTGACCTACAGCCTTA CCTCCAAACTGTGCCAGTCACGACAGAGATTGACCACCTTGCTGGCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 394-492, - strand, RNAz p=0.592172 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 394-492, - strand, RNAz p=0.592172 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 4-149, gnl|bosTau2|chr13 (49456519-49456664) | |
| 4-149, gnl|canFam2|chr24 (29780783-29781368) | |
| 4-149, gnl|echTel1|scaffold_276231 (4743-5283) | |
| 4-149, gnl|hg17|chr20 (36407969-36408608) | |
| 4-149, gnl|Hg17|chr20 (36408312-36408457) | |
| 4-149, gnl|loxAfr1|scaffold_8812 (3409-4018) | |
| 4-149, gnl|mm7|chr2 (158047168-158047807) | |
| 4-149, gnl|Mm7|chr2 (158047539-158047683) | |
| 4-149, gnl|oryCun1|scaffold_190323 (84813-84219) | |
| 4-149, gnl|panTro1|chr21 (38787929-38788568) | |
| 4-149, gnl|rheMac2|chr10 (26107157-26106519) | |
| 4-149, gnl|rn3|chr3 (148922190-148922786) | |
| 394-547, gnl|bosTau2|chr13 (49467573-49467726) | |
| 394-547, gnl|canFam2|chr24 (29787519-29787657) | |
| 394-547, gnl|dasNov1|scaffold_129666 (646-784) | |
| 394-547, gnl|echTel1|scaffold_312519 (4057-4195) | |
| 394-547, gnl|hg17|chr20 (36416081-36416219) | |
| 394-547, gnl|Hg17|chr20 (36416098-36416251) | |
| 394-547, gnl|loxAfr1|scaffold_8812 (10295-10433) | |
| 394-547, gnl|mm7|chr2 (158054347-158054484) | |
| 394-547, gnl|Mm7|chr2 (158054363-158054516) | |
| 394-547, gnl|oryCun1|scaffold_160805 (12313-12172) | |
| 394-547, gnl|panTro1|chr21 (38796026-38796164) | |
| 394-547, gnl|rheMac2|chr10 (26098478-26098340) | |
| 394-547, gnl|rn3|chr3 (148929311-148929448) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-149, gnl|bosTau2|chr13 (49456519-49456664) | |
| 4-149, gnl|canFam2|chr24 (29780783-29781368) | |
| 4-149, gnl|echTel1|scaffold_276231 (4743-5283) | |
| 4-149, gnl|hg17|chr20 (36407969-36408608) | |
| 4-149, gnl|Hg17|chr20 (36408312-36408457) | |
| 4-149, gnl|loxAfr1|scaffold_8812 (3409-4018) | |
| 4-149, gnl|mm7|chr2 (158047168-158047807) | |
| 4-149, gnl|Mm7|chr2 (158047539-158047683) | |
| 4-149, gnl|oryCun1|scaffold_190323 (84813-84219) | |
| 4-149, gnl|panTro1|chr21 (38787929-38788568) | |
| 4-149, gnl|rheMac2|chr10 (26107157-26106519) | |
| 4-149, gnl|rn3|chr3 (148922190-148922786) | |
| 394-547, gnl|bosTau2|chr13 (49467573-49467726) | |
| 394-547, gnl|canFam2|chr24 (29787519-29787657) | |
| 394-547, gnl|dasNov1|scaffold_129666 (646-784) | |
| 394-547, gnl|echTel1|scaffold_312519 (4057-4195) | |
| 394-547, gnl|hg17|chr20 (36416081-36416219) | |
| 394-547, gnl|Hg17|chr20 (36416098-36416251) | |
| 394-547, gnl|loxAfr1|scaffold_8812 (10295-10433) | |
| 394-547, gnl|mm7|chr2 (158054347-158054484) | |
| 394-547, gnl|Mm7|chr2 (158054363-158054516) | |
| 394-547, gnl|oryCun1|scaffold_160805 (12313-12172) | |
| 394-547, gnl|panTro1|chr21 (38796026-38796164) | |
| 394-547, gnl|rheMac2|chr10 (26098478-26098340) | |
| 394-547, gnl|rn3|chr3 (148929311-148929448) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) |