Non-Coding RNA Search

Ss1.1-Liv1-LVRM10058B08.5

Sequence:


               
               AGCGCCCGGAAAATGGTGGTGATGGCGCGGCTCTCGAGAACCGAGCGGCCGGACCTCGTC
TTTGAGGAAGAGGACCTCCCTTATGAGGAGGAGATCATGCGGAACCAGTTCTCCGTCAAA
TGCTGGCTCCGCTACATTGAGTTCAAACAGGGTGCCCCGAAGCCCAGACTCAATCAGCTG
TACGAGCGGGCGCTGAAGCTGCTGCCCTGCAGCTACAAACTCTGGTACCGCTACCTGAAG
GCACGCCGGGCACAGGTGAAGCACCGTTGCGTGACCGACCCAGCCTATGAAGATGTCAAC
AACTGCCATGAGAGGGCCTTTGTATTCATGCACAAGATGCCACGGCTGTGGCTAGATTAT
TGCCAATTCCTAATGGACCAGGGACGTGTCACACACACACGCCGCACTTTTGACCGCGCG
CTCCGGGCATTGCCCATCACACAGCACTCTCGTATTTGGCCCCTGTACCTGCGCTTCCTG
CGCTCACACCCCCTGCCTGAGACAGCTGTGCGGGGCTACCGACGCTTCCTCAAGCTAAGC
CCCGAGAGCGCCGAGGAGTACATCGAGTACCTCAAGTCAAGTGACCGGCTGGATGAGGCT
GCACAGCGCCTGGCCACCGTGGTGAATGACGAGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCCCGGAAAATGGTGGTGATGGCGCGGCTCTCGAGAACCGAGCGGCCGGACCTCGTC
TTTGAGGAAGAGGACCTCCCTTATGAGGAGGAGATCATGCGGAACCAGTTCTCCGTCAAA
TGCTGGCTCCGCTACATTGAGTTCAAACAGGGTGCCCCGAAGCCCAGACTCAATCAGCTG
TACGAGCGGGCGCTGAAGCTGCTGCCCTGCAGCTACAAACTCTGGTACCGCTACCTGAAG
GCACGCCGGGCACAGGTGAAGCACCGTTGCGTGACCGACCCAGCCTATGAAGATGTCAAC
AACTGCCATGAGAGGGCCTTTGTATTCATGCACAAGATGCCACGGCTGTGGCTAGATTAT
TGCCAATTCCTAATGGACCAGGGACGTGTCACACACACACGCCGCACTTTTGACCGCGCG
CTCCGGGCATTGCCCATCACACAGCACTCTCGTATTTGGCCCCTGTACCTGCGCTTCCTG
CGCTCACACCCCCTGCCTGAGACAGCTGTGCGGGGCTACCGACGCTTCCTCAAGCTAAGC
CCCGAGAGCGCCGAGGAGTACATCGAGTACCTCAAGTCAAGTGACCGGCTGGATGAGGCT
GCACAGCGCCTGGCCACCGTGGTGAATGACGAGCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61833853|ref|XP_594002.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61833853|ref|XP_594002.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               375-494, - strand, RNAz p=0.825795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-494, - strand, RNAz p=0.825795

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               64-212, gnl|bosTau2|chr7 (12377808-12377660)
               

               
               64-212, gnl|Hg17|chr19 (7599184-7599036)
               

               
               64-212, gnl|Mm7|chr8 (3581570-3581422)
               


               
               335-539, gnl|bosTau2|chr7 (12377038-12376834)
               

               
               335-539, gnl|canFam2|chr20 (55401160-55401368)
               

               
               335-539, gnl|danRer3|chrUn (55806093-55805885)
               

               
               335-539, gnl|dasNov1|scaffold_39961 (10981-10773)
               

               
               335-539, gnl|echTel1|scaffold_213682 (932-1140)
               

               
               335-539, gnl|fr1|chrUn (189935812-189935606)
               

               
               335-539, gnl|hg17|chr19 (7598125-7598333)
               

               
               335-539, gnl|Hg17|chr19 (7598328-7598124)
               

               
               335-539, gnl|loxAfr1|scaffold_70238 (5236-5444)
               

               
               335-539, gnl|mm7|chr8 (3580528-3580737)
               

               
               335-539, gnl|Mm7|chr8 (3580731-3580527)
               

               
               335-539, gnl|monDom2|scaffold_54 (529004-528796)
               

               
               335-539, gnl|panTro1|chr20 (7948091-7948299)
               

               
               335-539, gnl|rheMac2|chr19 (7578454-7578662)
               

               
               335-539, gnl|rn3|chr12 (2537770-2537560)
               

               
               335-539, gnl|xenTro1|scaffold_903 (187222-187423)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-212, gnl|bosTau2|chr7 (12377808-12377660)
               

               
               64-212, gnl|Hg17|chr19 (7599184-7599036)
               

               
               64-212, gnl|Mm7|chr8 (3581570-3581422)
               


               
               335-539, gnl|bosTau2|chr7 (12377038-12376834)
               

               
               335-539, gnl|canFam2|chr20 (55401160-55401368)
               

               
               335-539, gnl|danRer3|chrUn (55806093-55805885)
               

               
               335-539, gnl|dasNov1|scaffold_39961 (10981-10773)
               

               
               335-539, gnl|echTel1|scaffold_213682 (932-1140)
               

               
               335-539, gnl|fr1|chrUn (189935812-189935606)
               

               
               335-539, gnl|hg17|chr19 (7598125-7598333)
               

               
               335-539, gnl|Hg17|chr19 (7598328-7598124)
               

               
               335-539, gnl|loxAfr1|scaffold_70238 (5236-5444)
               

               
               335-539, gnl|mm7|chr8 (3580528-3580737)
               

               
               335-539, gnl|Mm7|chr8 (3580731-3580527)
               

               
               335-539, gnl|monDom2|scaffold_54 (529004-528796)
               

               
               335-539, gnl|panTro1|chr20 (7948091-7948299)
               

               
               335-539, gnl|rheMac2|chr19 (7578454-7578662)
               

               
               335-539, gnl|rn3|chr12 (2537770-2537560)
               

               
               335-539, gnl|xenTro1|scaffold_903 (187222-187423)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	64-212, gnl\|bosTau2\|chr7 (12377808-12377660)
	64-212, gnl\|Hg17\|chr19 (7599184-7599036)
	64-212, gnl\|Mm7\|chr8 (3581570-3581422)

	335-539, gnl\|bosTau2\|chr7 (12377038-12376834)
	335-539, gnl\|canFam2\|chr20 (55401160-55401368)
	335-539, gnl\|danRer3\|chrUn (55806093-55805885)
	335-539, gnl\|dasNov1\|scaffold_39961 (10981-10773)
	335-539, gnl\|echTel1\|scaffold_213682 (932-1140)
	335-539, gnl\|fr1\|chrUn (189935812-189935606)
	335-539, gnl\|hg17\|chr19 (7598125-7598333)
	335-539, gnl\|Hg17\|chr19 (7598328-7598124)
	335-539, gnl\|loxAfr1\|scaffold_70238 (5236-5444)
	335-539, gnl\|mm7\|chr8 (3580528-3580737)
	335-539, gnl\|Mm7\|chr8 (3580731-3580527)
	335-539, gnl\|monDom2\|scaffold_54 (529004-528796)
	335-539, gnl\|panTro1\|chr20 (7948091-7948299)
	335-539, gnl\|rheMac2\|chr19 (7578454-7578662)
	335-539, gnl\|rn3\|chr12 (2537770-2537560)
	335-539, gnl\|xenTro1\|scaffold_903 (187222-187423)