Non-Coding RNA Search

Ss1.1-Liv1-LVRM10058C09.5

Sequence:


               
               TTTGAAGGTGGATTTTATTCTTCTCATGATGCAAATGAGAATATTTAAGCTTGTAATGGT
AAGCCTGGGCCTCAAACCCAGAGTTGCCTAGCTCTAAGACTTATAATCTTAAGCAGCGCT
GCTATCATTTTACTATCTCTGTTTTTCTTTAGGGAGTAAATTTTTTTTCTGTGTTTTTGT
TTGTTTTTTGTTTTCATTCCAATGTAGTGCACTCGTTGAGTTGTTGAAACACAAGCCTCA
TGCAACAGAGGAACAACTGAGAACTGTCCTGGGCAACTTTGCAGCCTTTGTACAAAAGTG
CTGCGCCGCTCCTGACCATGAGGCCTGCTTTGCTGTGGAGGTACTGGATTTGTTTGTCTT
CATTCTAATGGGTCCAGTTTCCTTTGTTGTTGCATTTGATCAAGCTAGGACTTAGTGGCT
TATGTATCTGAAAAACACTATGTACATGCGGAATGAGAATCTTACTCTTCATTGTCTTAC
AAAATGACTGAGATAGCTCTTGCTTTTGTTTGTTTTAATATCCTGCTTCACTGTAACTTA
TTACTAAATGTCTGTAATAATTGTTTTGTTTCCAAAGTTGTGATGTTTATAAATATAGAT
AGAAATATTTGTAAGGCCCAAAATCTTGTTATGAAACCAAAACATTAATTTATTTAAACA
TTCTCTTGAAAAATGCTGGTTGGTGATCTGGATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAAGGTGGATTTTATTCTTCTCATGATGCAAATGAGAATATTTAAGCTTGTAATGGT
AAGCCTGGGCCTCAAACCCAGAGTTGCCTAGCTCTAAGACTTATAATCTTAAGCAGCGCT
GCTATCATTTTACTATCTCTGTTTTTCTTTAGGGAGTAAATTTTTTTTCTGTGTTTTTGT
TTGTTTTTTGTTTTCATTCCAATGTAGTGCACTCGTTGAGTTGTTGAAACACAAGCCTCA
TGCAACAGAGGAACAACTGAGAACTGTCCTGGGCAACTTTGCAGCCTTTGTACAAAAGTG
CTGCGCCGCTCCTGACCATGAGGCCTGCTTTGCTGTGGAGGTACTGGATTTGTTTGTCTT
CATTCTAATGGGTCCAGTTTCCTTTGTTGTTGCATTTGATCAAGCTAGGACTTAGTGGCT
TATGTATCTGAAAAACACTATGTACATGCGGAATGAGAATCTTACTCTTCATTGTCTTAC
AAAATGACTGAGATAGCTCTTGCTTTTGTTTGTTTTAATATCCTGCTTCACTGTAACTTA
TTACTAAATGTCTGTAATAATTGTTTTGTTTCCAAAGTTGTGATGTTTATAAATATAGAT
AGAAATATTTGTAAGGCCCAAAATCTTGTTATGAAACCAAAACATTAATTTATTTAAACA
TTCTCTTGAAAAATGCTGGTTGGTGATCTGGATGAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-696, gnl|bosTau2|chr28 (25539016-25538345)
               

               
               3-696, gnl|Hg17|chr4 (74650054-74650732)
               

               
               3-696, gnl|Mm7|chr5 (90445485-90446124)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-696, gnl|bosTau2|chr28 (25539016-25538345)
               

               
               3-696, gnl|Hg17|chr4 (74650054-74650732)
               

               
               3-696, gnl|Mm7|chr5 (90445485-90446124)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.300978)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)

	3-696, gnl\|bosTau2\|chr28 (25539016-25538345)
	3-696, gnl\|Hg17\|chr4 (74650054-74650732)
	3-696, gnl\|Mm7\|chr5 (90445485-90446124)