Ss1.1-Liv1-LVRM10062A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCTCCGGACTGCGGGCGCACGGGGCAGCCCTGCTGGCGGCCCCGGGACCCCCTGGAGC TTCCAGCCCGGAAACCGGGATCGGAGGAGACGCGCTGCGCCCGCCGCGAGGGACTCGTTG CCCGGTCTACTCACTGTGTGTTTGCTTCTGCCGACTTGCGCATCCAAAGCAGGTCCCGCC TTTAAACCAAATATTCTGCTGATCATGGCGGATGATCTGGGCATTGGGGATCTCGGTTGC TATGGGAACGACACACTGAGGACGCCGAATATCGACCGGCTTGCGGAGGAAGGCGTGAGG CTCACCCAGCACCTGGCGGCCGCCCCCGTCTGCACCCCCAGCCGGGCCGCCTTCCTCACG GGCAGACACGCGCTCAGATCAGGCATGGATGCCACCCATGGGTACCGCGTCCTGCGGTGG AATGGGGGCTCAGGCGGACTCCCCCAGAATGAGACCACCTTTGCCAGGATCCTGCAGCGG CAAGGCTACGCCACAGGCCTCATCGGAAAATGGCACCAGGGCGTCAACTGTGAATCCCGC ACTGACCACTGCCACCACCCCCTGAACCACGGGTTCGACTACTTCTATGGCATGCCCTTC ACGCTGGTCAGCGAATGTCACCCAGGCTGGCCCCCGCAAGTGGCCGTGGCCCTGGGGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCTCCGGACTGCGGGCGCACGGGGCAGCCCTGCTGGCGGCCCCGGGACCCCCTGGAGC TTCCAGCCCGGAAACCGGGATCGGAGGAGACGCGCTGCGCCCGCCGCGAGGGACTCGTTG CCCGGTCTACTCACTGTGTGTTTGCTTCTGCCGACTTGCGCATCCAAAGCAGGTCCCGCC TTTAAACCAAATATTCTGCTGATCATGGCGGATGATCTGGGCATTGGGGATCTCGGTTGC TATGGGAACGACACACTGAGGACGCCGAATATCGACCGGCTTGCGGAGGAAGGCGTGAGG CTCACCCAGCACCTGGCGGCCGCCCCCGTCTGCACCCCCAGCCGGGCCGCCTTCCTCACG GGCAGACACGCGCTCAGATCAGGCATGGATGCCACCCATGGGTACCGCGTCCTGCGGTGG AATGGGGGCTCAGGCGGACTCCCCCAGAATGAGACCACCTTTGCCAGGATCCTGCAGCGG CAAGGCTACGCCACAGGCCTCATCGGAAAATGGCACCAGGGCGTCAACTGTGAATCCCGC ACTGACCACTGCCACCACCCCCTGAACCACGGGTTCGACTACTTCTATGGCATGCCCTTC ACGCTGGTCAGCGAATGTCACCCAGGCTGGCCCCCGCAAGTGGCCGTGGCCCTGGGGGGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 259-383, gnl|bosTau2|chrX (48487460-48487584) | |
| 259-383, gnl|canFam2|chrX (1570895-1571021) | |
| 259-383, gnl|canFam2|chrX (1483300-1483428) | |
| 259-383, gnl|danRer3|chrNA (45200697-45200568) | |
| 259-383, gnl|danRer3|chrNA (45200571-45200697) | |
| 259-383, gnl|dasNov1|scaffold_115986 (334-464) | |
| 259-383, gnl|dasNov1|scaffold_115986 (460-334) | |
| 259-383, gnl|echTel1|scaffold_131090 (753-621) | |
| 259-383, gnl|echTel1|scaffold_131090 (627-753) | |
| 259-383, gnl|fr1|chrUn (132607026-132607152) | |
| 259-383, gnl|hg17|chrX (2833304-2833432) | |
| 259-383, gnl|Hg17|chrX (2833428-2833304) | |
| 259-383, gnl|hg17|chrY (12925414-12925570) | |
| 259-383, gnl|loxAfr1|scaffold_88549 (840-970) | |
| 259-383, gnl|loxAfr1|scaffold_88549 (966-840) | |
| 259-383, gnl|monDom2|scaffold_11 (1560213-1560085) | |
| 259-383, gnl|oryCun1|scaffold_54419 (818-688) | |
| 259-383, gnl|oryCun1|scaffold_54419 (692-818) | |
| 259-383, gnl|panTro1|chrX (2593134-2592978) | |
| 259-383, gnl|panTro1|chrX (2595130-2595258) | |
| 259-383, gnl|rheMac2|chrX (555134-554978) | |
| 259-383, gnl|rheMac2|chrX (555008-555136) | |
| 259-383, gnl|rn3|chr2 (122609621-122609493) | |
| 259-383, gnl|rn3|chrX (63970913-63971053) | |
| 259-383, gnl|tetNig1|chr2 (12898023-12897897) | |
| 259-383, gnl|tetNig1|chr2 (12897898-12898023) | |
| 259-383, gnl|xenTro1|scaffold_839 (386156-386029) | |
| 505-658, gnl|bosTau2|chrX (48491033-48491186) | |
| 505-658, gnl|canFam2|chrX (1478440-1478645) | |
| 505-658, gnl|canFam2|chrX (1575463-1575579) | |
| 505-658, gnl|danRer3|chrNA (45195885-45196090) | |
| 505-658, gnl|danRer3|chrNA (45196108-45195992) | |
| 505-658, gnl|dasNov1|scaffold_51150 (4113-3909) | |
| 505-658, gnl|dasNov1|scaffold_51150 (3899-4006) | |
| 505-658, gnl|echTel1|scaffold_49134 (5319-5114) | |
| 505-658, gnl|echTel1|scaffold_49134 (5094-5212) | |
| 505-658, gnl|fr1|chrUn (132606379-132606584) | |
| 505-658, gnl|galGal2|chr1 (121526225-121526020) | |
| 505-658, gnl|galGal2|chr1 (121526017-121526118) | |
| 505-658, gnl|hg17|chrX (2829427-2829632) | |
| 505-658, gnl|hg17|chrX (2995626-2995742) | |
| 505-658, gnl|Hg17|chrX (2829630-2829477) | |
| 505-658, gnl|loxAfr1|scaffold_88549 (5295-5397) | |
| 505-658, gnl|loxAfr1|scaffold_93613 (4083-4288) | |
| 505-658, gnl|monDom2|scaffold_11 (1565057-1564852) | |
| 505-658, gnl|monDom2|scaffold_11 (1329056-1328940) | |
| 505-658, gnl|oryCun1|scaffold_166473 (7459-7675) | |
| 505-658, gnl|oryCun1|scaffold_166473 (7675-7577) | |
| 505-658, gnl|panTro1|chrX (2756142-2756258) | |
| 505-658, gnl|panTro1|chrY (13449470-13449265) | |
| 505-658, gnl|rheMac2|chrX (640595-640393) | |
| 505-658, gnl|rheMac2|chrX (714474-714590) | |
| 505-658, gnl|rn3|chr2 (122610792-122610578) | |
| 505-658, gnl|rn3|chr2 (122610578-122610676) | |
| 505-658, gnl|tetNig1|chr2 (12897358-12897563) | |
| 505-658, gnl|tetNig1|chr3 (7282005-7281904) | |
| 505-658, gnl|xenTro1|scaffold_839 (391454-391249) | |
| 505-658, gnl|xenTro1|scaffold_839 (391232-391347) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 259-383, gnl|bosTau2|chrX (48487460-48487584) | |
| 259-383, gnl|canFam2|chrX (1570895-1571021) | |
| 259-383, gnl|canFam2|chrX (1483300-1483428) | |
| 259-383, gnl|danRer3|chrNA (45200697-45200568) | |
| 259-383, gnl|danRer3|chrNA (45200571-45200697) | |
| 259-383, gnl|dasNov1|scaffold_115986 (334-464) | |
| 259-383, gnl|dasNov1|scaffold_115986 (460-334) | |
| 259-383, gnl|echTel1|scaffold_131090 (753-621) | |
| 259-383, gnl|echTel1|scaffold_131090 (627-753) | |
| 259-383, gnl|fr1|chrUn (132607026-132607152) | |
| 259-383, gnl|hg17|chrX (2833304-2833432) | |
| 259-383, gnl|Hg17|chrX (2833428-2833304) | |
| 259-383, gnl|hg17|chrY (12925414-12925570) | |
| 259-383, gnl|loxAfr1|scaffold_88549 (840-970) | |
| 259-383, gnl|loxAfr1|scaffold_88549 (966-840) | |
| 259-383, gnl|monDom2|scaffold_11 (1560213-1560085) | |
| 259-383, gnl|oryCun1|scaffold_54419 (818-688) | |
| 259-383, gnl|oryCun1|scaffold_54419 (692-818) | |
| 259-383, gnl|panTro1|chrX (2593134-2592978) | |
| 259-383, gnl|panTro1|chrX (2595130-2595258) | |
| 259-383, gnl|rheMac2|chrX (555134-554978) | |
| 259-383, gnl|rheMac2|chrX (555008-555136) | |
| 259-383, gnl|rn3|chr2 (122609621-122609493) | |
| 259-383, gnl|rn3|chrX (63970913-63971053) | |
| 259-383, gnl|tetNig1|chr2 (12898023-12897897) | |
| 259-383, gnl|tetNig1|chr2 (12897898-12898023) | |
| 259-383, gnl|xenTro1|scaffold_839 (386156-386029) | |
| 505-658, gnl|bosTau2|chrX (48491033-48491186) | |
| 505-658, gnl|canFam2|chrX (1478440-1478645) | |
| 505-658, gnl|canFam2|chrX (1575463-1575579) | |
| 505-658, gnl|danRer3|chrNA (45195885-45196090) | |
| 505-658, gnl|danRer3|chrNA (45196108-45195992) | |
| 505-658, gnl|dasNov1|scaffold_51150 (4113-3909) | |
| 505-658, gnl|dasNov1|scaffold_51150 (3899-4006) | |
| 505-658, gnl|echTel1|scaffold_49134 (5319-5114) | |
| 505-658, gnl|echTel1|scaffold_49134 (5094-5212) | |
| 505-658, gnl|fr1|chrUn (132606379-132606584) | |
| 505-658, gnl|galGal2|chr1 (121526225-121526020) | |
| 505-658, gnl|galGal2|chr1 (121526017-121526118) | |
| 505-658, gnl|hg17|chrX (2829427-2829632) | |
| 505-658, gnl|hg17|chrX (2995626-2995742) | |
| 505-658, gnl|Hg17|chrX (2829630-2829477) | |
| 505-658, gnl|loxAfr1|scaffold_88549 (5295-5397) | |
| 505-658, gnl|loxAfr1|scaffold_93613 (4083-4288) | |
| 505-658, gnl|monDom2|scaffold_11 (1565057-1564852) | |
| 505-658, gnl|monDom2|scaffold_11 (1329056-1328940) | |
| 505-658, gnl|oryCun1|scaffold_166473 (7459-7675) | |
| 505-658, gnl|oryCun1|scaffold_166473 (7675-7577) | |
| 505-658, gnl|panTro1|chrX (2756142-2756258) | |
| 505-658, gnl|panTro1|chrY (13449470-13449265) | |
| 505-658, gnl|rheMac2|chrX (640595-640393) | |
| 505-658, gnl|rheMac2|chrX (714474-714590) | |
| 505-658, gnl|rn3|chr2 (122610792-122610578) | |
| 505-658, gnl|rn3|chr2 (122610578-122610676) | |
| 505-658, gnl|tetNig1|chr2 (12897358-12897563) | |
| 505-658, gnl|tetNig1|chr3 (7282005-7281904) | |
| 505-658, gnl|xenTro1|scaffold_839 (391454-391249) | |
| 505-658, gnl|xenTro1|scaffold_839 (391232-391347) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |