Non-Coding RNA Search

Ss1.1-Liv1-LVRM10066G07.5

Sequence:


               
               CGCGGATGGCAGTGGCAGCGATGACGGCGGCGGCAGCGGCCTCCGGAGGGGCAGGGGCGG
CCCGCTCCCTCTCCCGCTTCCGAGGCTGCCTGGCTGGCGCGCTGCTCGGGGACTGCGTGG
GCGCCGTCTACGAGGCGCGCGACACGGTCGACCTGACGTCAGTCCTGCGTCAGGTCCAGG
ACCTGGAGCCGGACCCCGGATCGGCGGGGAGCCCGCGGACAGAAGCACTGTGCTACACAG
ACGACACAGCCATGGCCAAGGCGCTGGTGCAGTCCCTGCTGGCCAAAGAGGCTTTCGACG
AGGTGGACATGGCTCACAGGTTTGCTCAGGAGTACAAGAAAGACCCAGACCGGGGTTATG
GTGCTGGAGTGATCACTGTCTTCCGGAAGCTCCTGAATCCCAAGTGCCGTGATGTCTTTG
AGCCTGCCCGGGCCCAGTTTAACGGCAAGGGCTCCTACGGCAACGGAGGTGCCATGCGGG
TGGCCGGCATCTCCCTGGCCTATAACAGCGTCCAGGATGTGCAGAAGTTTGCCCGGCTCT
CAGCCCAGCTGACACACGCCTCCTCCCTGGGATACAATGGTGCCATCCTGCAGGCCCTGG
CTGTGCATCTGGCTTTGCAGGGTGAGTCGTCCAGTGAGCACTTCCTGGAACAACTCTTGG
GCCACATGGAGGAGCTGGAGAGTGATGCCCAGTCCAAGTCGGATGCCAGGGAGTTGGGCA
TGGAGGAGTGTCCATACTCCAGCCGACTGAAGAAGATTGGAGAGCTTCTAGAGCAGGACT
CGGTGACCAGAGAGGAGGTGGTGTCTGAGCTAGGGAATGGCATTGCTGCCTTTGAATCTG
TGCCCACCGCCATCTACTGCTTCCTGCGCTGCATGGAGCCTGACCCCGAGATCCCCTCTG
CCTTCAATAACCTCCAAAGGACTCTCATCTATTCCATCTCACTTGGTGGGGACACAGACA
CCATTGCCACCATGGCTGGGGCCATTGCCGGTGCCTACTATGGAATGGAACAGGTGCCAG
AGAGCTGGCAGCAGAGCTGTGAGGGCTATGAGGAGACAGACGTCCTGGCCCAGAGCCTGC
ACCGGGTCTTCCAGAAGAGTCTGTGAGGGCCGCAGCTGCCGGGGCTCTACCACCGTGTCC
AGCAGGAACAACTACACCTCAGATTGGAAACCCTGGGCTTCCTCAGGCTTGGCTCCCTGC
CTCGGTCTTCCTGCGCTCTGGGCGGAGTGCACCGCCGGGGCTGGGCTCTCCACTGGAACA
GTGAGGGAGGAGCCGCTGCCTTCTGGCTCCGGGTTCCTGGCTTCTGCGGAGCCTCAGGTG
CTCCCCGGCTCCTCATTCAGATGTGAGGGACCAGGAAGGTTTTATTGTGAATTGGTGCCT
GTGCTGTTTTCCTTCATTATCTAGGACTTAGGATGTGGGGAGGTGGAGACGATCCACAGT
AGCCTCATTCCTCCTCGTCGGGATTTAGCCACTCTGCCAGAAAGCCTGTCTTTGTGCTGT
GCGGGGACCCCCAAGCACCGAGTTTGTATGGATCGGGGAGGTGGGCACGTGACTAGCTGA
TCCACATACACACCTGGCCCTTGGCTCTCTTGTTAACAGCTTCCAGAGGAAGTCACAGAG
CAATAAAGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGATGGCAGTGGCAGCGATGACGGCGGCGGCAGCGGCCTCCGGAGGGGCAGGGGCGG
CCCGCTCCCTCTCCCGCTTCCGAGGCTGCCTGGCTGGCGCGCTGCTCGGGGACTGCGTGG
GCGCCGTCTACGAGGCGCGCGACACGGTCGACCTGACGTCAGTCCTGCGTCAGGTCCAGG
ACCTGGAGCCGGACCCCGGATCGGCGGGGAGCCCGCGGACAGAAGCACTGTGCTACACAG
ACGACACAGCCATGGCCAAGGCGCTGGTGCAGTCCCTGCTGGCCAAAGAGGCTTTCGACG
AGGTGGACATGGCTCACAGGTTTGCTCAGGAGTACAAGAAAGACCCAGACCGGGGTTATG
GTGCTGGAGTGATCACTGTCTTCCGGAAGCTCCTGAATCCCAAGTGCCGTGATGTCTTTG
AGCCTGCCCGGGCCCAGTTTAACGGCAAGGGCTCCTACGGCAACGGAGGTGCCATGCGGG
TGGCCGGCATCTCCCTGGCCTATAACAGCGTCCAGGATGTGCAGAAGTTTGCCCGGCTCT
CAGCCCAGCTGACACACGCCTCCTCCCTGGGATACAATGGTGCCATCCTGCAGGCCCTGG
CTGTGCATCTGGCTTTGCAGGGTGAGTCGTCCAGTGAGCACTTCCTGGAACAACTCTTGG
GCCACATGGAGGAGCTGGAGAGTGATGCCCAGTCCAAGTCGGATGCCAGGGAGTTGGGCA
TGGAGGAGTGTCCATACTCCAGCCGACTGAAGAAGATTGGAGAGCTTCTAGAGCAGGACT
CGGTGACCAGAGAGGAGGTGGTGTCTGAGCTAGGGAATGGCATTGCTGCCTTTGAATCTG
TGCCCACCGCCATCTACTGCTTCCTGCGCTGCATGGAGCCTGACCCCGAGATCCCCTCTG
CCTTCAATAACCTCCAAAGGACTCTCATCTATTCCATCTCACTTGGTGGGGACACAGACA
CCATTGCCACCATGGCTGGGGCCATTGCCGGTGCCTACTATGGAATGGAACAGGTGCCAG
AGAGCTGGCAGCAGAGCTGTGAGGGCTATGAGGAGACAGACGTCCTGGCCCAGAGCCTGC
ACCGGGTCTTCCAGAAGAGTCTGTGAGGGCCGCAGCTGCCGGGGCTCTACCACCGTGTCC
AGCAGGAACAACTACACCTCAGATTGGAAACCCTGGGCTTCCTCAGGCTTGGCTCCCTGC
CTCGGTCTTCCTGCGCTCTGGGCGGAGTGCACCGCCGGGGCTGGGCTCTCCACTGGAACA
GTGAGGGAGGAGCCGCTGCCTTCTGGCTCCGGGTTCCTGGCTTCTGCGGAGCCTCAGGTG
CTCCCCGGCTCCTCATTCAGATGTGAGGGACCAGGAAGGTTTTATTGTGAATTGGTGCCT
GTGCTGTTTTCCTTCATTATCTAGGACTTAGGATGTGGGGAGGTGGAGACGATCCACAGT
AGCCTCATTCCTCCTCGTCGGGATTTAGCCACTCTGCCAGAAAGCCTGTCTTTGTGCTGT
GCGGGGACCCCCAAGCACCGAGTTTGTATGGATCGGGGAGGTGGGCACGTGACTAGCTGA
TCCACATACACACCTGGCCCTTGGCTCTCTTGTTAACAGCTTCCAGAGGAAGTCACAGAG
CAATAAAGAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61849597|ref|XP_599917.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61849597|ref|XP_599917.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               891-1050, - strand, RNAz p=0.95307
               

               
               1238-1341, + strand, RNAz p=0.999723

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               891-1050, - strand, RNAz p=0.95307
               

               
               1238-1341, + strand, RNAz p=0.999723

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_017825, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017825, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-222, gnl|bosTau2|chr3 (76794238-76794020)
               

               
               1-222, gnl|Hg17|chr1 (36223594-36223809)
               

               
               1-222, gnl|Mm7|chr4 (125766324-125766089)
               


               
               303-527, gnl|bosTau2|chr3 (76791564-76791341)
               

               
               303-527, gnl|Hg17|chr1 (36226291-36226519)
               

               
               303-527, gnl|Mm7|chr4 (125762854-125762631)
               


               
               812-1341, gnl|bosTau2|chr3 (76789369-76788855)
               

               
               812-1341, gnl|Hg17|chr1 (36227789-36228329)
               

               
               812-1341, gnl|Mm7|chr4 (125761514-125761014)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr3 (76794238-76794020)
               

               
               1-222, gnl|Hg17|chr1 (36223594-36223809)
               

               
               1-222, gnl|Mm7|chr4 (125766324-125766089)
               


               
               303-527, gnl|bosTau2|chr3 (76791564-76791341)
               

               
               303-527, gnl|Hg17|chr1 (36226291-36226519)
               

               
               303-527, gnl|Mm7|chr4 (125762854-125762631)
               


               
               812-1341, gnl|bosTau2|chr3 (76789369-76788855)
               

               
               812-1341, gnl|Hg17|chr1 (36227789-36228329)
               

               
               812-1341, gnl|Mm7|chr4 (125761514-125761014)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               amn (0.417711)
               

               
               col (0.390016)
               

               
               nca (0.273748)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               col (0.390016)
               

               
               nca (0.273748)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	891-1050, - strand, RNAz p=0.95307
	1238-1341, + strand, RNAz p=0.999723

	1-222, gnl\|bosTau2\|chr3 (76794238-76794020)
	1-222, gnl\|Hg17\|chr1 (36223594-36223809)
	1-222, gnl\|Mm7\|chr4 (125766324-125766089)

	303-527, gnl\|bosTau2\|chr3 (76791564-76791341)
	303-527, gnl\|Hg17\|chr1 (36226291-36226519)
	303-527, gnl\|Mm7\|chr4 (125762854-125762631)

	812-1341, gnl\|bosTau2\|chr3 (76789369-76788855)
	812-1341, gnl\|Hg17\|chr1 (36227789-36228329)
	812-1341, gnl\|Mm7\|chr4 (125761514-125761014)

	amn (0.417711)
	col (0.390016)
	nca (0.273748)
	cty (0.20816)
	fcc (0.197785)
	nlu (0.191681)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)