Ss1.1-Liv1-LVRM10069B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTACATCTGAGCTCTTATAGATCCAATTTTTAGTGGTGGAAACATTACTTGAGGAGGAC TCAGAGAAGCATTGTCATTTGGATTGAAACTGAAGAGGCTCTGGGCAACTCACCAGAAGT CTAAGGGACACTCTGTTCCTAAAAGTGGTTTAGCACAGATTCTCCTAGACTCTTGGTGTG GGAATGTCAGAAAAAAAATTGAGGACCGTCTCAATCATTTTGCAGAAATGCAGACTTCTG AGCCTCCTTAGCCTGAGGAGCCTTTCCAGCTACTACACAGTTGTTCAGAGACTCCTTATT CTAGGAGGTAGCTCCTGATTGTAGCTTCCGGAACAGCGCCGAGGCCTTCAAGTGCATGAT GTGCGATGTGCGGAAGGGCACCTCCACCCGGAAACCTCGACCTGTCTCCCAGTTGGTTGC ACAGCAGGTTACTCAGCAGTTTGTGCCCCCTACACAGTCAAAGAAAGAGAAAAAAGATAA AGTAGACAAAGAAAAAAGTGAAAAGGAAACAACTAGCAAAAAGAACAGTCATAAGAAAAC CAGACCAAGATTGAAAAATGTGGATCGGAGTAGTGCTCAACATTTGGAGGTTACTGTTGG CGACCTGACAGTCATTATTATGGCAGACTTTAAGGAGAAAACAAAGTCACCGCCTGCATC CAGTGCTGCCTCTGCAGATCAGCACAGTCAGAGTGGCTCTAGCTCTGATAACACAGAGAG GGGAATGTCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTACATCTGAGCTCTTATAGATCCAATTTTTAGTGGTGGAAACATTACTTGAGGAGGAC TCAGAGAAGCATTGTCATTTGGATTGAAACTGAAGAGGCTCTGGGCAACTCACCAGAAGT CTAAGGGACACTCTGTTCCTAAAAGTGGTTTAGCACAGATTCTCCTAGACTCTTGGTGTG GGAATGTCAGAAAAAAAATTGAGGACCGTCTCAATCATTTTGCAGAAATGCAGACTTCTG AGCCTCCTTAGCCTGAGGAGCCTTTCCAGCTACTACACAGTTGTTCAGAGACTCCTTATT CTAGGAGGTAGCTCCTGATTGTAGCTTCCGGAACAGCGCCGAGGCCTTCAAGTGCATGAT GTGCGATGTGCGGAAGGGCACCTCCACCCGGAAACCTCGACCTGTCTCCCAGTTGGTTGC ACAGCAGGTTACTCAGCAGTTTGTGCCCCCTACACAGTCAAAGAAAGAGAAAAAAGATAA AGTAGACAAAGAAAAAAGTGAAAAGGAAACAACTAGCAAAAAGAACAGTCATAAGAAAAC CAGACCAAGATTGAAAAATGTGGATCGGAGTAGTGCTCAACATTTGGAGGTTACTGTTGG CGACCTGACAGTCATTATTATGGCAGACTTTAAGGAGAAAACAAAGTCACCGCCTGCATC CAGTGCTGCCTCTGCAGATCAGCACAGTCAGAGTGGCTCTAGCTCTGATAACACAGAGAG GGGAATGTCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 29-146, + strand, RNAz p=0.933088 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 29-146, + strand, RNAz p=0.933088 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-146, gnl|bosTau2|chr5 (27507133-27507278) | |
| 1-146, gnl|canFam2|chr27 (14690912-14690172) | |
| 1-146, gnl|dasNov1|scaffold_24117 (5512-4799) | |
| 1-146, gnl|hg17|chr12 (40915099-40915825) | |
| 1-146, gnl|Hg17|chr12 (40915826-40915681) | |
| 1-146, gnl|loxAfr1|scaffold_19264 (30657-31365) | |
| 1-146, gnl|mm7|chr15 (93414321-93415058) | |
| 1-146, gnl|Mm7|chr15 (93415063-93414911) | |
| 1-146, gnl|monDom2|scaffold_133 (490138-489508) | |
| 1-146, gnl|oryCun1|scaffold_194373 (4839-4161) | |
| 1-146, gnl|panTro1|chr10 (41509824-41510552) | |
| 1-146, gnl|rheMac2|chr11 (39155468-39156199) | |
| 1-146, gnl|rn3|chr7 (131899349-131900047) | |
| 542-732, gnl|bosTau2|chr5 (27582986-27583173) | |
| 542-732, gnl|canFam2|chr27 (14755818-14755579) | |
| 542-732, gnl|danRer3|chr4 (11257154-11256909) | |
| 542-732, gnl|dasNov1|scaffold_49825 (2459-2220) | |
| 542-732, gnl|echTel1|scaffold_282642 (49530-49769) | |
| 542-732, gnl|fr1|chrUn (65341756-65341974) | |
| 542-732, gnl|galGal2|chr1 (26430944-26431183) | |
| 542-732, gnl|hg17|chr12 (40840659-40840898) | |
| 542-732, gnl|Hg17|chr12 (40840897-40840710) | |
| 542-732, gnl|loxAfr1|scaffold_15170 (8755-8969) | |
| 542-732, gnl|mm7|chr15 (93365757-93365993) | |
| 542-732, gnl|Mm7|chr15 (93365992-93365808) | |
| 542-732, gnl|monDom2|scaffold_133 (576370-576131) | |
| 542-732, gnl|oryCun1|scaffold_111573 (6961-6725) | |
| 542-732, gnl|panTro1|chr10 (41435989-41436228) | |
| 542-732, gnl|rheMac2|chr11 (39082247-39082486) | |
| 542-732, gnl|rn3|chr7 (131848564-131848803) | |
| 542-732, gnl|tetNig1|chr19 (4028736-4028491) | |
| 542-732, gnl|xenTro1|scaffold_66 (1226982-1227221) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-146, gnl|bosTau2|chr5 (27507133-27507278) | |
| 1-146, gnl|canFam2|chr27 (14690912-14690172) | |
| 1-146, gnl|dasNov1|scaffold_24117 (5512-4799) | |
| 1-146, gnl|hg17|chr12 (40915099-40915825) | |
| 1-146, gnl|Hg17|chr12 (40915826-40915681) | |
| 1-146, gnl|loxAfr1|scaffold_19264 (30657-31365) | |
| 1-146, gnl|mm7|chr15 (93414321-93415058) | |
| 1-146, gnl|Mm7|chr15 (93415063-93414911) | |
| 1-146, gnl|monDom2|scaffold_133 (490138-489508) | |
| 1-146, gnl|oryCun1|scaffold_194373 (4839-4161) | |
| 1-146, gnl|panTro1|chr10 (41509824-41510552) | |
| 1-146, gnl|rheMac2|chr11 (39155468-39156199) | |
| 1-146, gnl|rn3|chr7 (131899349-131900047) | |
| 542-732, gnl|bosTau2|chr5 (27582986-27583173) | |
| 542-732, gnl|canFam2|chr27 (14755818-14755579) | |
| 542-732, gnl|danRer3|chr4 (11257154-11256909) | |
| 542-732, gnl|dasNov1|scaffold_49825 (2459-2220) | |
| 542-732, gnl|echTel1|scaffold_282642 (49530-49769) | |
| 542-732, gnl|fr1|chrUn (65341756-65341974) | |
| 542-732, gnl|galGal2|chr1 (26430944-26431183) | |
| 542-732, gnl|hg17|chr12 (40840659-40840898) | |
| 542-732, gnl|Hg17|chr12 (40840897-40840710) | |
| 542-732, gnl|loxAfr1|scaffold_15170 (8755-8969) | |
| 542-732, gnl|mm7|chr15 (93365757-93365993) | |
| 542-732, gnl|Mm7|chr15 (93365992-93365808) | |
| 542-732, gnl|monDom2|scaffold_133 (576370-576131) | |
| 542-732, gnl|oryCun1|scaffold_111573 (6961-6725) | |
| 542-732, gnl|panTro1|chr10 (41435989-41436228) | |
| 542-732, gnl|rheMac2|chr11 (39082247-39082486) | |
| 542-732, gnl|rn3|chr7 (131848564-131848803) | |
| 542-732, gnl|tetNig1|chr19 (4028736-4028491) | |
| 542-732, gnl|xenTro1|scaffold_66 (1226982-1227221) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |