Ss1.1-Liv1-LVRM10070F07.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTCAGTGGATGGAGAAAGCAAACCAAGGCCATCATTATATTCTCTGCAAAACTTTGAG GAAATGGAGACAGAAGATGGTGAGAAAATGAGCAACATGGGGACTCTGAACTCTTCCATG CTGCACAGGAGCACAGAATCCTTGAAGAGCCTCAGTTCAGAGCTGTGTCCAGAAAAAATC CTGCCCGAGGAGAAACCAGTCCACCTGCCGGTGCTCAGAAGGTCCAAGTCTCAATCCAGA CCCCAGCAGGTCAAGTTTTCAGATGACGTCATCGACAACGGAAGCTACGAGAACATCGAG GTCCGGCAGCCGCCGATGAGCGAGAGGACCCGGCGGCGGGTGTACCACTTTGACGAGAGG GGCTCCAGGCCTCACCATCATCGCCGCCGGAGAAGCCGCAAGTCCCGCTCGGACAATGCC CTGAACCTGGTGGCGGAGAGGAAATACTCTCCCAGGGCCAGGCTGCGGCTTTACACCCCC GACAACTACGAGAAGTTCATCCAGAGCAAGAGCGCGCGCGAGATCCAGGCTTACATCCGG GGCGCGGAGCTCTGCGGCCCCTACGCCCACGCCACTTCCGACTACGCGCTGCAGCCCCCC GGGGGCCCCCGCTTCCTGGGGCTCTACGGGGAGGACGACGACTCGTGGTGCTCCTCGTCC ACCTCCTCCTCCTCCGACTCGGAAGAGGAGGGCTATTTTCTCGGACAACCGATTCCTCAA CCCCGGCCGCAGAGATACGCCTACTACACAGACGACCTTTCCAGTCCGACGTCGGCCCTC CCTGCGCCTCAGTTGGGTCAGAGGACAACCAAATCCAAGAAGAAAAAGGGACACAAGGGC AAAAACTGCATCATTTCTTAACCGGGTCGCCGTGGAGCTCATATTTAAACTTCACCATTT AACCATCTTCAATCATATCTTTTTTTTTTTTTTTTCTTCCATAGGAAAGTTGCTAAAATA GATTAAAGTGCTTTTGCCCATGTACATGAGACCCCGACTGCTGTTTACAGTGTCCGATTA ACATTTGGGAGGTGTGATGTCTCCGTTTGCTCTCCTTGGATGGTGCCAGGTGGACGTGAC CTCTTGTGCCGGTCCGGGGCATCTCGGTTTGGTTTTTTTATGCGGCTGCTTTGGTCTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTCAGTGGATGGAGAAAGCAAACCAAGGCCATCATTATATTCTCTGCAAAACTTTGAG GAAATGGAGACAGAAGATGGTGAGAAAATGAGCAACATGGGGACTCTGAACTCTTCCATG CTGCACAGGAGCACAGAATCCTTGAAGAGCCTCAGTTCAGAGCTGTGTCCAGAAAAAATC CTGCCCGAGGAGAAACCAGTCCACCTGCCGGTGCTCAGAAGGTCCAAGTCTCAATCCAGA CCCCAGCAGGTCAAGTTTTCAGATGACGTCATCGACAACGGAAGCTACGAGAACATCGAG GTCCGGCAGCCGCCGATGAGCGAGAGGACCCGGCGGCGGGTGTACCACTTTGACGAGAGG GGCTCCAGGCCTCACCATCATCGCCGCCGGAGAAGCCGCAAGTCCCGCTCGGACAATGCC CTGAACCTGGTGGCGGAGAGGAAATACTCTCCCAGGGCCAGGCTGCGGCTTTACACCCCC GACAACTACGAGAAGTTCATCCAGAGCAAGAGCGCGCGCGAGATCCAGGCTTACATCCGG GGCGCGGAGCTCTGCGGCCCCTACGCCCACGCCACTTCCGACTACGCGCTGCAGCCCCCC GGGGGCCCCCGCTTCCTGGGGCTCTACGGGGAGGACGACGACTCGTGGTGCTCCTCGTCC ACCTCCTCCTCCTCCGACTCGGAAGAGGAGGGCTATTTTCTCGGACAACCGATTCCTCAA CCCCGGCCGCAGAGATACGCCTACTACACAGACGACCTTTCCAGTCCGACGTCGGCCCTC CCTGCGCCTCAGTTGGGTCAGAGGACAACCAAATCCAAGAAGAAAAAGGGACACAAGGGC AAAAACTGCATCATTTCTTAACCGGGTCGCCGTGGAGCTCATATTTAAACTTCACCATTT AACCATCTTCAATCATATCTTTTTTTTTTTTTTTTCTTCCATAGGAAAGTTGCTAAAATA GATTAAAGTGCTTTTGCCCATGTACATGAGACCCCGACTGCTGTTTACAGTGTCCGATTA ACATTTGGGAGGTGTGATGTCTCCGTTTGCTCTCCTTGGATGGTGCCAGGTGGACGTGAC CTCTTGTGCCGGTCCGGGGCATCTCGGTTTGGTTTTTTTATGCGGCTGCTTTGGTCTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 641-760, - strand, RNAz p=0.796079 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 641-760, - strand, RNAz p=0.796079 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-137, gnl|bosTau2|chr5 (26963836-26963972) | |
| 1-137, gnl|canFam2|chr27 (14447215-14447370) | |
| 1-137, gnl|canFam2|chr27 (14447355-14447218) | |
| 1-137, gnl|danRer3|chr4 (11198744-11199000) | |
| 1-137, gnl|danRer3|chr4 (11198985-11198842) | |
| 1-137, gnl|dasNov1|scaffold_6826 (66008-66163) | |
| 1-137, gnl|dasNov1|scaffold_6826 (66148-66011) | |
| 1-137, gnl|echTel1|scaffold_276928 (13541-13696) | |
| 1-137, gnl|echTel1|scaffold_276928 (13681-13544) | |
| 1-137, gnl|fr1|chrUn (65355906-65355652) | |
| 1-137, gnl|fr1|chrUn (65355678-65355815) | |
| 1-137, gnl|galGal2|chr1 (26571384-26571229) | |
| 1-137, gnl|galGal2|chr1 (26571244-26571381) | |
| 1-137, gnl|hg17|chr12 (41140597-41140734) | |
| 1-137, gnl|Hg17|chr12 (41140732-41140596) | |
| 1-137, gnl|hg17|chr3 (184816425-184816575) | |
| 1-137, gnl|loxAfr1|scaffold_407 (187891-188046) | |
| 1-137, gnl|loxAfr1|scaffold_407 (188031-187894) | |
| 1-137, gnl|mm7|chr15 (93581671-93581519) | |
| 1-137, gnl|mm7|chr15 (93581534-93581671) | |
| 1-137, gnl|Mm7|chr15 (93581669-93581533) | |
| 1-137, gnl|monDom2|scaffold_133 (247704-247859) | |
| 1-137, gnl|monDom2|scaffold_133 (247844-247707) | |
| 1-137, gnl|oryCun1|scaffold_98902 (3270-3422) | |
| 1-137, gnl|oryCun1|scaffold_98902 (3409-3273) | |
| 1-137, gnl|panTro1|chr10 (41734096-41734233) | |
| 1-137, gnl|panTro1|chr2 (188758474-188758624) | |
| 1-137, gnl|rheMac2|chr11 (39392739-39392876) | |
| 1-137, gnl|rheMac2|chr2 (103048071-103047920) | |
| 1-137, gnl|rn3|chr7 (132045874-132045722) | |
| 1-137, gnl|rn3|chr7 (132045737-132045874) | |
| 1-137, gnl|tetNig1|chr13 (9513510-9513763) | |
| 1-137, gnl|tetNig1|chr13 (9513748-9513611) | |
| 1-137, gnl|xenTro1|scaffold_66 (1317504-1317349) | |
| 1-137, gnl|xenTro1|scaffold_66 (1317364-1317501) | |
| 442-1111, gnl|bosTau2|chr5 (26964390-26965047) | |
| 442-1111, gnl|Hg17|chr12 (41140294-41139628) | |
| 442-1111, gnl|Mm7|chr15 (93581231-93580610) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-137, gnl|bosTau2|chr5 (26963836-26963972) | |
| 1-137, gnl|canFam2|chr27 (14447215-14447370) | |
| 1-137, gnl|canFam2|chr27 (14447355-14447218) | |
| 1-137, gnl|danRer3|chr4 (11198744-11199000) | |
| 1-137, gnl|danRer3|chr4 (11198985-11198842) | |
| 1-137, gnl|dasNov1|scaffold_6826 (66008-66163) | |
| 1-137, gnl|dasNov1|scaffold_6826 (66148-66011) | |
| 1-137, gnl|echTel1|scaffold_276928 (13541-13696) | |
| 1-137, gnl|echTel1|scaffold_276928 (13681-13544) | |
| 1-137, gnl|fr1|chrUn (65355906-65355652) | |
| 1-137, gnl|fr1|chrUn (65355678-65355815) | |
| 1-137, gnl|galGal2|chr1 (26571384-26571229) | |
| 1-137, gnl|galGal2|chr1 (26571244-26571381) | |
| 1-137, gnl|hg17|chr12 (41140597-41140734) | |
| 1-137, gnl|Hg17|chr12 (41140732-41140596) | |
| 1-137, gnl|hg17|chr3 (184816425-184816575) | |
| 1-137, gnl|loxAfr1|scaffold_407 (187891-188046) | |
| 1-137, gnl|loxAfr1|scaffold_407 (188031-187894) | |
| 1-137, gnl|mm7|chr15 (93581671-93581519) | |
| 1-137, gnl|mm7|chr15 (93581534-93581671) | |
| 1-137, gnl|Mm7|chr15 (93581669-93581533) | |
| 1-137, gnl|monDom2|scaffold_133 (247704-247859) | |
| 1-137, gnl|monDom2|scaffold_133 (247844-247707) | |
| 1-137, gnl|oryCun1|scaffold_98902 (3270-3422) | |
| 1-137, gnl|oryCun1|scaffold_98902 (3409-3273) | |
| 1-137, gnl|panTro1|chr10 (41734096-41734233) | |
| 1-137, gnl|panTro1|chr2 (188758474-188758624) | |
| 1-137, gnl|rheMac2|chr11 (39392739-39392876) | |
| 1-137, gnl|rheMac2|chr2 (103048071-103047920) | |
| 1-137, gnl|rn3|chr7 (132045874-132045722) | |
| 1-137, gnl|rn3|chr7 (132045737-132045874) | |
| 1-137, gnl|tetNig1|chr13 (9513510-9513763) | |
| 1-137, gnl|tetNig1|chr13 (9513748-9513611) | |
| 1-137, gnl|xenTro1|scaffold_66 (1317504-1317349) | |
| 1-137, gnl|xenTro1|scaffold_66 (1317364-1317501) | |
| 442-1111, gnl|bosTau2|chr5 (26964390-26965047) | |
| 442-1111, gnl|Hg17|chr12 (41140294-41139628) | |
| 442-1111, gnl|Mm7|chr15 (93581231-93580610) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| nca (0.136874) | |
| ese (0.126502) |