Non-Coding RNA Search

Ss1.1-Liv1-LVRM10073G06.5

Sequence:


               
               CTTCCCCGCCCTGGGAGCCTCTGATTGCGCTTCTTTTCCAGAGTCCTCCCTCTTGTGCAG
TCGCTGCAGCTGCCCCCAGCCCGCTCCGGACAATGGCGACGGCTGAGGTACTGAACATTG
GTAAGAAACTCTACGAGGGTAAAACAAAAGAAGTCTATGAATTGTTGGATAGTCCAGGAA
AAGTCCTCCTGCAGTCCAAGGACCAGATTACAGCAGGAAATGCAGCCAGAAAAAATCACC
TTGAAGGAAAAGCTGCCATCTCAAACACAATCACCAGCTGTGTTTTTCAGTTGTTACAGG
AAGCAGGTATCAAGACTGCTTTCACCAGAAAATGTGGGGAGACGGCTTTCATTGCACCTA
AGTGTGAAATGATTCCAATTGAATGGGTTTGTAGAAGAATAGCAACTGGTTCTTTTCTCA
AAAGAAACCCTGGTGTCAAGGAAGGCTATAAGTTCTACCCACCTAAAGTAGAGATGTTTT
TCAAGGATGACGCCAATAATGACCCACAGTGGTCTGAGGAACAGCTCATTGCTGCAAATT
TTTGCTTTGCTGGACTTGTTATAGGCCAGACTGAAGTGGATGTCATGAGTCATGCTACAC
AGGCCATTTTCGAAATACTGGAGAAATCCTGGCTGCCCCAGAACTGTACACTGGTTGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCCCGCCCTGGGAGCCTCTGATTGCGCTTCTTTTCCAGAGTCCTCCCTCTTGTGCAG
TCGCTGCAGCTGCCCCCAGCCCGCTCCGGACAATGGCGACGGCTGAGGTACTGAACATTG
GTAAGAAACTCTACGAGGGTAAAACAAAAGAAGTCTATGAATTGTTGGATAGTCCAGGAA
AAGTCCTCCTGCAGTCCAAGGACCAGATTACAGCAGGAAATGCAGCCAGAAAAAATCACC
TTGAAGGAAAAGCTGCCATCTCAAACACAATCACCAGCTGTGTTTTTCAGTTGTTACAGG
AAGCAGGTATCAAGACTGCTTTCACCAGAAAATGTGGGGAGACGGCTTTCATTGCACCTA
AGTGTGAAATGATTCCAATTGAATGGGTTTGTAGAAGAATAGCAACTGGTTCTTTTCTCA
AAAGAAACCCTGGTGTCAAGGAAGGCTATAAGTTCTACCCACCTAAAGTAGAGATGTTTT
TCAAGGATGACGCCAATAATGACCCACAGTGGTCTGAGGAACAGCTCATTGCTGCAAATT
TTTGCTTTGCTGGACTTGTTATAGGCCAGACTGAAGTGGATGTCATGAGTCATGCTACAC
AGGCCATTTTCGAAATACTGGAGAAATCCTGGCTGCCCCAGAACTGTACACTGGTTGATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56462310|gb|AAV91438.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56462310|gb|AAV91438.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               237-353, + strand, RNAz p=0.805563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-353, + strand, RNAz p=0.805563

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr13 (4898291-4898953)
               

               
               1-660, gnl|Hg17|chr8 (4632168-4632809)
               

               
               1-660, gnl|Mm7|chr18 (6234328-6233779)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr13 (4898291-4898953)
               

               
               1-660, gnl|Hg17|chr8 (4632168-4632809)
               

               
               1-660, gnl|Mm7|chr18 (6234328-6233779)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               amn (0.417711)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)

	1-660, gnl\|bosTau2\|chr13 (4898291-4898953)
	1-660, gnl\|Hg17\|chr8 (4632168-4632809)
	1-660, gnl\|Mm7\|chr18 (6234328-6233779)