Ss1.1-Liv1-LVRM10074G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGATGGCACCGGCTGGAAGTCCCCGCGCCAAGAAGGGCATTTTGGAGCGTTTGGATGC TGGGGAGGTTGTGGTTGGAGATGGCGGATTTCTCCTAACTCTGGAGAAGAGGGGCTACGT GAAGGCAGGGCTCTGGACACCAGAGGCCGTGGTAGAGCATCCAAATGCAGTTCGTCAGCT TCACATGGAATTCTTGAGAGCAGGATCGAATGTCATGCAGACTTTCACCTTTTCTGCCAA TGAGGACAATATGGAAAGTCAGTGGGAAGCTGTCAACGCTGCTGCCTGTGACCTCGCCCA AGAAGTGGCCGGCAAAGGTGATGCTTTGGTAGCAGGGGGGCTCTGCCAGACTTCGTTATA CAAACACCACAAGGATGAAGATAGAATTAAAAAACTTTTTCGACTACAGCTCGAAGTATT TGTCAGGAAAAACGTGGACTTCTTGATTGCAGAGTATTTTGAATATGCTGAGGAAGCTGT GTGGGCTGTGGAAGTCTTAAAAGAATCTGGAAAACCCGTGGCAGCCACCATGTGCATAGG CCCAGAGGGAGACATGCATGGCGTGACCCCTGGCGAATGCGCTGTGAAGCTGGTGAAGGC AGGGGCTTCGATCATTGGGGTGAACTGCCGATTTGGGCCCTGGACCAGTCTGAAGACAAT GAGGCTAATGAAGGAAGGCCTGCAGGCTGCAGGCCTGAAAGCACATTTGATGGTGCAGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGATGGCACCGGCTGGAAGTCCCCGCGCCAAGAAGGGCATTTTGGAGCGTTTGGATGC TGGGGAGGTTGTGGTTGGAGATGGCGGATTTCTCCTAACTCTGGAGAAGAGGGGCTACGT GAAGGCAGGGCTCTGGACACCAGAGGCCGTGGTAGAGCATCCAAATGCAGTTCGTCAGCT TCACATGGAATTCTTGAGAGCAGGATCGAATGTCATGCAGACTTTCACCTTTTCTGCCAA TGAGGACAATATGGAAAGTCAGTGGGAAGCTGTCAACGCTGCTGCCTGTGACCTCGCCCA AGAAGTGGCCGGCAAAGGTGATGCTTTGGTAGCAGGGGGGCTCTGCCAGACTTCGTTATA CAAACACCACAAGGATGAAGATAGAATTAAAAAACTTTTTCGACTACAGCTCGAAGTATT TGTCAGGAAAAACGTGGACTTCTTGATTGCAGAGTATTTTGAATATGCTGAGGAAGCTGT GTGGGCTGTGGAAGTCTTAAAAGAATCTGGAAAACCCGTGGCAGCCACCATGTGCATAGG CCCAGAGGGAGACATGCATGGCGTGACCCCTGGCGAATGCGCTGTGAAGCTGGTGAAGGC AGGGGCTTCGATCATTGGGGTGAACTGCCGATTTGGGCCCTGGACCAGTCTGAAGACAAT GAGGCTAATGAAGGAAGGCCTGCAGGCTGCAGGCCTGAAAGCACATTTGATGGTGCAGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 36-174, + strand, RNAz p=0.951725 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 36-174, + strand, RNAz p=0.951725 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC020665, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 36-174, gnl|bosTau2|chr10 (4177976-4178114) | |
| 36-174, gnl|Hg17|chr5 (78409057-78409195) | |
| 36-174, gnl|Mm7|chr13 (90734468-90734330) | |
| 259-454, gnl|bosTau2|chr10 (4180997-4181192) | |
| 259-454, gnl|canFam2|chr3 (30664929-30664697) | |
| 259-454, gnl|danRer3|chrNA (157659410-157659207) | |
| 259-454, gnl|dasNov1|scaffold_4496 (83981-83750) | |
| 259-454, gnl|echTel1|scaffold_185053 (3444-3674) | |
| 259-454, gnl|fr1|chrUn (60680910-60681125) | |
| 259-454, gnl|galGal2|chr13_random (992398-992627) | |
| 259-454, gnl|hg17|chr5 (78412261-78412493) | |
| 259-454, gnl|Hg17|chr5 (78412262-78412457) | |
| 259-454, gnl|loxAfr1|scaffold_1402 (44338-44108) | |
| 259-454, gnl|mm7|chr13 (90729693-90729464) | |
| 259-454, gnl|Mm7|chr13 (90729688-90729495) | |
| 259-454, gnl|monDom2|scaffold_27 (36983037-36982813) | |
| 259-454, gnl|oryCun1|scaffold_127506 (6301-6503) | |
| 259-454, gnl|panTro1|chr4 (36806087-36805855) | |
| 259-454, gnl|rheMac2|chr6 (75308713-75308945) | |
| 259-454, gnl|rn3|chr2 (23886848-23886619) | |
| 259-454, gnl|tetNig1|chr12 (9566040-9565841) | |
| 259-454, gnl|xenTro1|scaffold_183 (1526689-1526490) | |
| 485-623, gnl|bosTau2|chr10 (4182984-4183123) | |
| 485-623, gnl|Hg17|chr5 (78414418-78414557) | |
| 485-623, gnl|Mm7|chr13 (90726730-90726575) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-174, gnl|bosTau2|chr10 (4177976-4178114) | |
| 36-174, gnl|Hg17|chr5 (78409057-78409195) | |
| 36-174, gnl|Mm7|chr13 (90734468-90734330) | |
| 259-454, gnl|bosTau2|chr10 (4180997-4181192) | |
| 259-454, gnl|canFam2|chr3 (30664929-30664697) | |
| 259-454, gnl|danRer3|chrNA (157659410-157659207) | |
| 259-454, gnl|dasNov1|scaffold_4496 (83981-83750) | |
| 259-454, gnl|echTel1|scaffold_185053 (3444-3674) | |
| 259-454, gnl|fr1|chrUn (60680910-60681125) | |
| 259-454, gnl|galGal2|chr13_random (992398-992627) | |
| 259-454, gnl|hg17|chr5 (78412261-78412493) | |
| 259-454, gnl|Hg17|chr5 (78412262-78412457) | |
| 259-454, gnl|loxAfr1|scaffold_1402 (44338-44108) | |
| 259-454, gnl|mm7|chr13 (90729693-90729464) | |
| 259-454, gnl|Mm7|chr13 (90729688-90729495) | |
| 259-454, gnl|monDom2|scaffold_27 (36983037-36982813) | |
| 259-454, gnl|oryCun1|scaffold_127506 (6301-6503) | |
| 259-454, gnl|panTro1|chr4 (36806087-36805855) | |
| 259-454, gnl|rheMac2|chr6 (75308713-75308945) | |
| 259-454, gnl|rn3|chr2 (23886848-23886619) | |
| 259-454, gnl|tetNig1|chr12 (9566040-9565841) | |
| 259-454, gnl|xenTro1|scaffold_183 (1526689-1526490) | |
| 485-623, gnl|bosTau2|chr10 (4182984-4183123) | |
| 485-623, gnl|Hg17|chr5 (78414418-78414557) | |
| 485-623, gnl|Mm7|chr13 (90726730-90726575) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.495704) | |
| cli (0.152812) |