Ss1.1-Liv1-LVRM10076G03.5
|
GGGGCAAGGTCCGAGTCTGTGAGTGCGGCCTCATGTCGTCTTTCAACTGCTCTGCTTTCG
TTGTGTGTGGCTGGGCCGCTTCTCTTCCCGACTCGGGATCGGGGAGGGCCCTGAGCTAGG
GCACCCAGCCGGGTCTGCGGCGTTCCTGTCTGTGGGCCGGTGGTGAGTCCCAACTGTCTC
TGCGGGCCTTGCTCCCTGAGGAACCGGCGCTAGATAAACCGTCGCCCGGACTTCCTTGGG
TACCCAGGCTCTTCTGGAAGACTAGAGAAGTTTTCTTTCTGGTCACCTACCACTGGTTCC
ATGGCTACCATGCAGATGGATCCTGAGCTTGCCAAGCGCCTCTTCTTTGAAGGGGCCACT
GTGGTCATCCTGAATATGCCCAAGGGGACGGAGTTTGGCATTGACTACAACTCCTGGGAG
GTGGGGCCCAAGTTCCGGGGTGTGAAGATGATCCCACCAGGCATCCACTTCCTTCACTAT
AGCTCTGTGGACAAGGCCAATCCCAGGGAGATGGGCCCTCGAATGGGCTTCTTCCTCAGC
CTCCAGCAGCGGGGGCTGATGGTCCTGCGCTGGAATGCAGTCCGGGAAGAGGTAGACCTG
TCCCCAGCCCCAGAAGCTGAGGTGGAGGCCATGAGGGCCAACCTCCAGGAACTGGACCCG
TTCCTGGGACCCTACCCATATGCCACACTCAAGAAGTGGATCTCACTCACCAGCTTCATC
AGTGAGGCCACAGTGGAGAAGCTACAGCCCGAGAGTCGACATATCTGTGCCTTCTCGGAG
GTGCTGCCGGTGCTGTCCATGAAGCACACCAAGGACCGGGTGGGCCAGAATCTACCCCGC
TGCGGCACTGAGTGCAAAAGCTACCAGGAGGGCCTGGCCCGGCTGCCTGAGATGAAGCCC
AGAGCCGGCACAGAGATCCGCTTCTCAGAGCTGCCCACACAGATGTTCCCGGCAGGTGCC
ACGCCAGCAGAAATAACCAGGCACAGCATGGACCTGAGCTATGCCCTGGAGACTGTGCTC
AGCAAGCACTTCCCCAACAGCCCCCAGGATGTGCTAGGTGAGCTCCAGTTTGCCTTCGTA
TGCTTCCTTCTGGGGAATGTGTACGAGGCATTCGAGCACTGGAAGCAGCTCCTGAACCTT
CTGTGCCGGTCAGAAGAGGCCATGGTGAAGCACCACACCCTCTACATCAACCTCATCTCC
ATCCTGTACCACCAGCTCGGTGAGATCCCCGCTGACTTCTTTGTGGACATTGTCTCCCAG
GACAACTTCCTCACCAGCACCTTACAGGTTTTCTTTTCCTCCGCCTGCAGTGTGGCTGTG
GATGCCACCCTGAGGCAGAAAGCTGAAAAGTTCCAAGCTCACCTGACCAAGAAGTTTCGA
TGGGACTTTGCAGCAGAGCCTGAGGACTGCGCCCCGGTGGTGGTGGAGCTCCCGGAGGGT
GTGGGGACCGGCTAACCAGGAATGCTCTCGCCCCGGGGAGGCCCCTTCCCTCATGGCTGC
AGTCCTGGCTTCTCCGTTCCTCCTTCCTACTGGAACCTGTTGGGGCACTAGCCCCACCAA
GTTCTGCAGAAATGGAGCCAGAATTCCCTCTTTCACCAATAAATAAGTTCCTTCAGTGCC
AGAGGGGCTATATCCTGTCGTAAAGGCATATTTGTGATTCCCTGTCAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGGGCAAGGTCCGAGTCTGTGAGTGCGGCCTCATGTCGTCTTTCAACTGCTCTGCTTTCG
TTGTGTGTGGCTGGGCCGCTTCTCTTCCCGACTCGGGATCGGGGAGGGCCCTGAGCTAGG
GCACCCAGCCGGGTCTGCGGCGTTCCTGTCTGTGGGCCGGTGGTGAGTCCCAACTGTCTC
TGCGGGCCTTGCTCCCTGAGGAACCGGCGCTAGATAAACCGTCGCCCGGACTTCCTTGGG
TACCCAGGCTCTTCTGGAAGACTAGAGAAGTTTTCTTTCTGGTCACCTACCACTGGTTCC
ATGGCTACCATGCAGATGGATCCTGAGCTTGCCAAGCGCCTCTTCTTTGAAGGGGCCACT
GTGGTCATCCTGAATATGCCCAAGGGGACGGAGTTTGGCATTGACTACAACTCCTGGGAG
GTGGGGCCCAAGTTCCGGGGTGTGAAGATGATCCCACCAGGCATCCACTTCCTTCACTAT
AGCTCTGTGGACAAGGCCAATCCCAGGGAGATGGGCCCTCGAATGGGCTTCTTCCTCAGC
CTCCAGCAGCGGGGGCTGATGGTCCTGCGCTGGAATGCAGTCCGGGAAGAGGTAGACCTG
TCCCCAGCCCCAGAAGCTGAGGTGGAGGCCATGAGGGCCAACCTCCAGGAACTGGACCCG
TTCCTGGGACCCTACCCATATGCCACACTCAAGAAGTGGATCTCACTCACCAGCTTCATC
AGTGAGGCCACAGTGGAGAAGCTACAGCCCGAGAGTCGACATATCTGTGCCTTCTCGGAG
GTGCTGCCGGTGCTGTCCATGAAGCACACCAAGGACCGGGTGGGCCAGAATCTACCCCGC
TGCGGCACTGAGTGCAAAAGCTACCAGGAGGGCCTGGCCCGGCTGCCTGAGATGAAGCCC
AGAGCCGGCACAGAGATCCGCTTCTCAGAGCTGCCCACACAGATGTTCCCGGCAGGTGCC
ACGCCAGCAGAAATAACCAGGCACAGCATGGACCTGAGCTATGCCCTGGAGACTGTGCTC
AGCAAGCACTTCCCCAACAGCCCCCAGGATGTGCTAGGTGAGCTCCAGTTTGCCTTCGTA
TGCTTCCTTCTGGGGAATGTGTACGAGGCATTCGAGCACTGGAAGCAGCTCCTGAACCTT
CTGTGCCGGTCAGAAGAGGCCATGGTGAAGCACCACACCCTCTACATCAACCTCATCTCC
ATCCTGTACCACCAGCTCGGTGAGATCCCCGCTGACTTCTTTGTGGACATTGTCTCCCAG
GACAACTTCCTCACCAGCACCTTACAGGTTTTCTTTTCCTCCGCCTGCAGTGTGGCTGTG
GATGCCACCCTGAGGCAGAAAGCTGAAAAGTTCCAAGCTCACCTGACCAAGAAGTTTCGA
TGGGACTTTGCAGCAGAGCCTGAGGACTGCGCCCCGGTGGTGGTGGAGCTCCCGGAGGGT
GTGGGGACCGGCTAACCAGGAATGCTCTCGCCCCGGGGAGGCCCCTTCCCTCATGGCTGC
AGTCCTGGCTTCTCCGTTCCTCCTTCCTACTGGAACCTGTTGGGGCACTAGCCCCACCAA
GTTCTGCAGAAATGGAGCCAGAATTCCCTCTTTCACCAATAAATAAGTTCCTTCAGTGCC
AGAGGGGCTATATCCTGTCGTAAAGGCATATTTGTGATTCCCTGTCAG
|
|
gi|57104192|ref|XP_534409.1| |
Protein identifier
|
gi|57104192|ref|XP_534409.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
14-181, gnl|bosTau2|chr13 (44372657-44372824) |
|
14-181, gnl|canFam2|chr24 (28023860-28024328) |
|
14-181, gnl|echTel1|scaffold_310533 (44739-45190) |
|
14-181, gnl|hg17|chr20 (34287590-34288027) |
|
14-181, gnl|Hg17|chr20 (34287835-34287995) |
|
14-181, gnl|loxAfr1|scaffold_2441 (81089-81548) |
|
14-181, gnl|mm7|chr2 (156288234-156288636) |
|
14-181, gnl|oryCun1|scaffold_213077 (10310-10719) |
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14-181, gnl|panTro1|chr21 (36515944-36516381) |
|
14-181, gnl|rheMac2|chr10 (28284370-28283914) |
|
14-181, gnl|rn3|chr3 (146868328-146868733) |
| |
|
259-1062, gnl|bosTau2|chr13 (44375541-44376344) |
|
259-1062, gnl|Hg17|chr20 (34291158-34291966) |
|
259-1062, gnl|Mm7|chr2 (156291505-156292312) |
| |
|
265-715, gnl|bosTau2|chr11 (52321050-52321482) |
|
265-715, gnl|Hg17|chr20 (34291175-34291616) |
| |
|
1286-1668, gnl|bosTau2|chr13 (44391209-44391589) |
|
1286-1668, gnl|Hg17|chr20 (34306912-34307299) |
|
1286-1668, gnl|Mm7|chr2 (156307721-156308080) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
14-181, gnl|bosTau2|chr13 (44372657-44372824) |
|
14-181, gnl|canFam2|chr24 (28023860-28024328) |
|
14-181, gnl|echTel1|scaffold_310533 (44739-45190) |
|
14-181, gnl|hg17|chr20 (34287590-34288027) |
|
14-181, gnl|Hg17|chr20 (34287835-34287995) |
|
14-181, gnl|loxAfr1|scaffold_2441 (81089-81548) |
|
14-181, gnl|mm7|chr2 (156288234-156288636) |
|
14-181, gnl|oryCun1|scaffold_213077 (10310-10719) |
|
14-181, gnl|panTro1|chr21 (36515944-36516381) |
|
14-181, gnl|rheMac2|chr10 (28284370-28283914) |
|
14-181, gnl|rn3|chr3 (146868328-146868733) |
| |
|
259-1062, gnl|bosTau2|chr13 (44375541-44376344) |
|
259-1062, gnl|Hg17|chr20 (34291158-34291966) |
|
259-1062, gnl|Mm7|chr2 (156291505-156292312) |
| |
|
265-715, gnl|bosTau2|chr11 (52321050-52321482) |
|
265-715, gnl|Hg17|chr20 (34291175-34291616) |
| |
|
1286-1668, gnl|bosTau2|chr13 (44391209-44391589) |
|
1286-1668, gnl|Hg17|chr20 (34306912-34307299) |
|
1286-1668, gnl|Mm7|chr2 (156307721-156308080) |
|
ill (0.175593) |
|
eye (0.170503) |
|
eli (0.151814) |
|
hyp (0.142837) |
|
med (0.116252) |
|
cty (0.10408) |
|
ill (0.175593) |
|
eye (0.170503) |
|
eli (0.151814) |
|
hyp (0.142837) |
|
med (0.116252) |
|
cty (0.10408) |
