Ss1.1-Liv1-LVRM10079C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGAGGACCGCTTCATGCTGCTCTTCAGCAAGGTGGAGCGGCTGACCCAGCGGATG GCTGGCATGGCCTTCCTGGGCAACTTCCAGGACAACCTGCAGATGCTCACACCGCAACTC AATGCCATCATCGCAGCCTCCGCCTCCGTCAAGTCCTCGCAAAAGCTGAAGCAGATGTTG GAGATCATACTTGCGCTGGGGAACTACATGAACAGCAGCAAGCGGGGAGCTGTGTATGGC TTCAAGCTCCAGAGCCTAGATCTTCTACTGGACACCAAGTCCACTGACAGGAAGATGACA CTGCTGCATTTCATCGCCCTGACGGTAAAGGAGAAATACCCAGACCTGGCTAACTTCTGG CACGAGCTGCACTTTGTGGAGAAGGCTGCAGCAGTGTCCCTGGAGAATGTGCTGCTAGAC GTGAAGGAGCTGGGCCGGGGCATGGAGCTGATCCGGCGGGAGTGCAGCATACACGACAAC AGCGTCCTGCGCAACTTCCTTAGCGCCAATGAAGGCAAACTGGACAAGCTCCAGCGCGAC GCCAAGACAGCCGAGGAGGCCTACAATGCAGTCGTGCGCTACTTCGGTGAGAGTCCCAAG ACCACGCCGCCTTCTGTATTCTTCCCAGTATTTGTCCGATTCATTCGTTCTTACAAGGAA GCAGAACAAGAGAATGAAGCCCGCAAAAAGCAGGAGGAGGTAATGCGGGAGAAGCAGCTG GCTCAGGAAGCCAAGAAACTGGATGCCAAGACCCCATCCCAGCGGAACAAGTGGCAACAG CAGGAGCTAATTGCGGAACTGCGGCGGCGCCAGGCCAAGGAGCACCGGCCCGTTTACGAG GGGAAGGATGGTACCATTGAAGACATCATCACAGTGCTGAAGAGTGTCCCTTTCACGGCC CGTACTGCCAAGCGGGGCTCACGCTTCTTCTGCGATGCAGCCCACCATGATGAGTCAAAC TGTTAACCCCCGAGGCTGGGGCTCTTGACAGGCCTCCACCACCAGCCCCTTGTCGTCTGC CACCAAGCCAGGAGTGCTGCACCACCCACTGGCCCGCCTCGGGCTCCAGGCCCTCACTGA GACCCTCTTGGAGGCAGAAGCACTTCAGCTCTGAGTCCTGCAGGTCCAACCAGTGGACCT GAAGCCCTGGAATGGCCAAGGGCCCAGCAGAAAGCTCTGCTGCTCTCCTCCCAGTGTCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGAGGACCGCTTCATGCTGCTCTTCAGCAAGGTGGAGCGGCTGACCCAGCGGATG GCTGGCATGGCCTTCCTGGGCAACTTCCAGGACAACCTGCAGATGCTCACACCGCAACTC AATGCCATCATCGCAGCCTCCGCCTCCGTCAAGTCCTCGCAAAAGCTGAAGCAGATGTTG GAGATCATACTTGCGCTGGGGAACTACATGAACAGCAGCAAGCGGGGAGCTGTGTATGGC TTCAAGCTCCAGAGCCTAGATCTTCTACTGGACACCAAGTCCACTGACAGGAAGATGACA CTGCTGCATTTCATCGCCCTGACGGTAAAGGAGAAATACCCAGACCTGGCTAACTTCTGG CACGAGCTGCACTTTGTGGAGAAGGCTGCAGCAGTGTCCCTGGAGAATGTGCTGCTAGAC GTGAAGGAGCTGGGCCGGGGCATGGAGCTGATCCGGCGGGAGTGCAGCATACACGACAAC AGCGTCCTGCGCAACTTCCTTAGCGCCAATGAAGGCAAACTGGACAAGCTCCAGCGCGAC GCCAAGACAGCCGAGGAGGCCTACAATGCAGTCGTGCGCTACTTCGGTGAGAGTCCCAAG ACCACGCCGCCTTCTGTATTCTTCCCAGTATTTGTCCGATTCATTCGTTCTTACAAGGAA GCAGAACAAGAGAATGAAGCCCGCAAAAAGCAGGAGGAGGTAATGCGGGAGAAGCAGCTG GCTCAGGAAGCCAAGAAACTGGATGCCAAGACCCCATCCCAGCGGAACAAGTGGCAACAG CAGGAGCTAATTGCGGAACTGCGGCGGCGCCAGGCCAAGGAGCACCGGCCCGTTTACGAG GGGAAGGATGGTACCATTGAAGACATCATCACAGTGCTGAAGAGTGTCCCTTTCACGGCC CGTACTGCCAAGCGGGGCTCACGCTTCTTCTGCGATGCAGCCCACCATGATGAGTCAAAC TGTTAACCCCCGAGGCTGGGGCTCTTGACAGGCCTCCACCACCAGCCCCTTGTCGTCTGC CACCAAGCCAGGAGTGCTGCACCACCCACTGGCCCGCCTCGGGCTCCAGGCCCTCACTGA GACCCTCTTGGAGGCAGAAGCACTTCAGCTCTGAGTCCTGCAGGTCCAACCAGTGGACCT GAAGCCCTGGAATGGCCAAGGGCCCAGCAGAAAGCTCTGCTGCTCTCCTCCCAGTGTCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 2-114, + strand, RNAz p=0.956415 | |
| 1064-1165, - strand, RNAz p=0.982188 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-114, + strand, RNAz p=0.956415 | |
| 1064-1165, - strand, RNAz p=0.982188 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC033181, - |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 2-114, gnl|bosTau2|chr5 (21744792-21744904) | |
| 2-114, gnl|canFam2|chr27 (8021761-8021486) | |
| 2-114, gnl|danRer3|chr6 (8841108-8841362) | |
| 2-114, gnl|dasNov1|scaffold_41715 (13114-13356) | |
| 2-114, gnl|echTel1|scaffold_305464 (17993-17719) | |
| 2-114, gnl|fr1|chrUn (25951088-25951359) | |
| 2-114, gnl|galGal2|chr7 (36193058-36192801) | |
| 2-114, gnl|hg17|chr12 (48329718-48329993) | |
| 2-114, gnl|Hg17|chr12 (48329853-48329741) | |
| 2-114, gnl|loxAfr1|scaffold_3183 (9130-8856) | |
| 2-114, gnl|mm7|chr15 (99306853-99307128) | |
| 2-114, gnl|Mm7|chr15 (99306988-99306876) | |
| 2-114, gnl|monDom2|scaffold_2 (43895913-43895659) | |
| 2-114, gnl|oryCun1|scaffold_110083 (4702-4953) | |
| 2-114, gnl|panTro1|chr10 (49513117-49513392) | |
| 2-114, gnl|rheMac2|chr11 (46790523-46790798) | |
| 2-114, gnl|rn3|chr7 (138145322-138145597) | |
| 2-114, gnl|tetNig1|chr2 (12428377-12428648) | |
| 2-114, gnl|xenTro1|scaffold_133 (692318-692558) | |
| 392-576, gnl|bosTau2|chr5 (21746088-21746273) | |
| 392-576, gnl|Hg17|chr12 (48328406-48328222) | |
| 392-576, gnl|Mm7|chr15 (99305761-99305561) | |
| 746-874, gnl|bosTau2|chr5 (21747502-21747630) | |
| 746-874, gnl|canFam2|chr27 (8024581-8024437) | |
| 746-874, gnl|danRer3|chr6 (8831237-8831368) | |
| 746-874, gnl|dasNov1|scaffold_41715 (11093-11220) | |
| 746-874, gnl|echTel1|scaffold_305464 (20497-20356) | |
| 746-874, gnl|fr1|chrUn (25949443-25949580) | |
| 746-874, gnl|galGal2|chr7 (36197355-36197210) | |
| 746-874, gnl|hg17|chr12 (48326935-48327080) | |
| 746-874, gnl|Hg17|chr12 (48327064-48326936) | |
| 746-874, gnl|loxAfr1|scaffold_3183 (11834-11689) | |
| 746-874, gnl|mm7|chr15 (99304375-99304519) | |
| 746-874, gnl|Mm7|chr15 (99304504-99304376) | |
| 746-874, gnl|monDom2|scaffold_18 (41184789-41184923) | |
| 746-874, gnl|oryCun1|scaffold_205537 (19107-19237) | |
| 746-874, gnl|panTro1|chr10 (49510386-49510532) | |
| 746-874, gnl|rheMac2|chr11 (46787808-46787954) | |
| 746-874, gnl|rn3|chr10 (92397457-92397322) | |
| 746-874, gnl|tetNig1|chr2 (12426850-12426981) | |
| 746-874, gnl|xenTro1|scaffold_133 (687773-687911) | |
| 988-1187, gnl|bosTau2|chr5 (21748543-21748745) | |
| 988-1187, gnl|canFam2|chr27 (8025820-8025532) | |
| 988-1187, gnl|echTel1|scaffold_274361 (2799-2551) | |
| 988-1187, gnl|hg17|chr12 (48325632-48325934) | |
| 988-1187, gnl|Hg17|chr12 (48325957-48325763) | |
| 988-1187, gnl|loxAfr1|scaffold_3183 (13138-12878) | |
| 988-1187, gnl|mm7|chr15 (99303311-99303598) | |
| 988-1187, gnl|Mm7|chr15 (99303621-99303438) | |
| 988-1187, gnl|panTro1|chr10 (49509083-49509385) | |
| 988-1187, gnl|rheMac2|chr11 (46786529-46786829) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-114, gnl|bosTau2|chr5 (21744792-21744904) | |
| 2-114, gnl|canFam2|chr27 (8021761-8021486) | |
| 2-114, gnl|danRer3|chr6 (8841108-8841362) | |
| 2-114, gnl|dasNov1|scaffold_41715 (13114-13356) | |
| 2-114, gnl|echTel1|scaffold_305464 (17993-17719) | |
| 2-114, gnl|fr1|chrUn (25951088-25951359) | |
| 2-114, gnl|galGal2|chr7 (36193058-36192801) | |
| 2-114, gnl|hg17|chr12 (48329718-48329993) | |
| 2-114, gnl|Hg17|chr12 (48329853-48329741) | |
| 2-114, gnl|loxAfr1|scaffold_3183 (9130-8856) | |
| 2-114, gnl|mm7|chr15 (99306853-99307128) | |
| 2-114, gnl|Mm7|chr15 (99306988-99306876) | |
| 2-114, gnl|monDom2|scaffold_2 (43895913-43895659) | |
| 2-114, gnl|oryCun1|scaffold_110083 (4702-4953) | |
| 2-114, gnl|panTro1|chr10 (49513117-49513392) | |
| 2-114, gnl|rheMac2|chr11 (46790523-46790798) | |
| 2-114, gnl|rn3|chr7 (138145322-138145597) | |
| 2-114, gnl|tetNig1|chr2 (12428377-12428648) | |
| 2-114, gnl|xenTro1|scaffold_133 (692318-692558) | |
| 392-576, gnl|bosTau2|chr5 (21746088-21746273) | |
| 392-576, gnl|Hg17|chr12 (48328406-48328222) | |
| 392-576, gnl|Mm7|chr15 (99305761-99305561) | |
| 746-874, gnl|bosTau2|chr5 (21747502-21747630) | |
| 746-874, gnl|canFam2|chr27 (8024581-8024437) | |
| 746-874, gnl|danRer3|chr6 (8831237-8831368) | |
| 746-874, gnl|dasNov1|scaffold_41715 (11093-11220) | |
| 746-874, gnl|echTel1|scaffold_305464 (20497-20356) | |
| 746-874, gnl|fr1|chrUn (25949443-25949580) | |
| 746-874, gnl|galGal2|chr7 (36197355-36197210) | |
| 746-874, gnl|hg17|chr12 (48326935-48327080) | |
| 746-874, gnl|Hg17|chr12 (48327064-48326936) | |
| 746-874, gnl|loxAfr1|scaffold_3183 (11834-11689) | |
| 746-874, gnl|mm7|chr15 (99304375-99304519) | |
| 746-874, gnl|Mm7|chr15 (99304504-99304376) | |
| 746-874, gnl|monDom2|scaffold_18 (41184789-41184923) | |
| 746-874, gnl|oryCun1|scaffold_205537 (19107-19237) | |
| 746-874, gnl|panTro1|chr10 (49510386-49510532) | |
| 746-874, gnl|rheMac2|chr11 (46787808-46787954) | |
| 746-874, gnl|rn3|chr10 (92397457-92397322) | |
| 746-874, gnl|tetNig1|chr2 (12426850-12426981) | |
| 746-874, gnl|xenTro1|scaffold_133 (687773-687911) | |
| 988-1187, gnl|bosTau2|chr5 (21748543-21748745) | |
| 988-1187, gnl|canFam2|chr27 (8025820-8025532) | |
| 988-1187, gnl|echTel1|scaffold_274361 (2799-2551) | |
| 988-1187, gnl|hg17|chr12 (48325632-48325934) | |
| 988-1187, gnl|Hg17|chr12 (48325957-48325763) | |
| 988-1187, gnl|loxAfr1|scaffold_3183 (13138-12878) | |
| 988-1187, gnl|mm7|chr15 (99303311-99303598) | |
| 988-1187, gnl|Mm7|chr15 (99303621-99303438) | |
| 988-1187, gnl|panTro1|chr10 (49509083-49509385) | |
| 988-1187, gnl|rheMac2|chr11 (46786529-46786829) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| hyp (0.285673) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| pla (0.133672) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.285673) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| pla (0.133672) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) |