Non-Coding RNA Search

Ss1.1-Liv1-LVRM10080C12.5

Sequence:


               
               CAGCGGGCAGGGGCGGGCTGGAGGCGGTGGTGCTGCCACGTCCTGGCGGCTGCTCGCGCT
GTGGCGGCTGAGCAAGCGACTGTAGCGCGCGCGGGAGGTAGAGGAGGTGGGGCTGGCGCT
GAAGCCGGATCCGGATCCAGTGCTGTATACCCGGGTGGGTGAGAGTTCGACAAGGCCTGG
AGAGGAGCGCCAACTGCGGCCCTCTACGGACCTTACTGCAACGATGAAACCTGATGAAAC
TCCTCTCTTTGACCCAAGTCTACTCAAAGAAGTGGACTGGAGTCAGAATACAGCTACATT
TTCTCCAGCCATTTCCCCAACACATCCTGGAGAAGGTTTGGTTTTGAGGCCTCTTTGTAC
TGCTGATTTAAATAGAGGTATGGACTTACTTAGTTTACAAATTCTGGTTAGACTTACAGC
AATAGCATTCTGTTTTCTCCATAAACATGAGTCTGATAACTTTTAAAAATACTATTTGAC
TTGTATATTATTTTTAATGCTTAATTTTTGAAGTGGCTGAGAACTCAGTTCCATTGTGTA
CATTTCATGGTTAAAACCAGATATTACTCTGAAGTATTTCAAATGACTTAAGTACAACAG
TGCTCCTTCCTAATTAAGAAACCAAAAAGGAGTTCCTATCGTGGCTCAGTGGTTAAGGAA
TCCTACCAGGAACCATGAGGTTGCAGTTTCCATCTCTGGCCTCGCTCAGTGGGTTGAGGA
TCTGGCGTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGGGCAGGGGCGGGCTGGAGGCGGTGGTGCTGCCACGTCCTGGCGGCTGCTCGCGCT
GTGGCGGCTGAGCAAGCGACTGTAGCGCGCGCGGGAGGTAGAGGAGGTGGGGCTGGCGCT
GAAGCCGGATCCGGATCCAGTGCTGTATACCCGGGTGGGTGAGAGTTCGACAAGGCCTGG
AGAGGAGCGCCAACTGCGGCCCTCTACGGACCTTACTGCAACGATGAAACCTGATGAAAC
TCCTCTCTTTGACCCAAGTCTACTCAAAGAAGTGGACTGGAGTCAGAATACAGCTACATT
TTCTCCAGCCATTTCCCCAACACATCCTGGAGAAGGTTTGGTTTTGAGGCCTCTTTGTAC
TGCTGATTTAAATAGAGGTATGGACTTACTTAGTTTACAAATTCTGGTTAGACTTACAGC
AATAGCATTCTGTTTTCTCCATAAACATGAGTCTGATAACTTTTAAAAATACTATTTGAC
TTGTATATTATTTTTAATGCTTAATTTTTGAAGTGGCTGAGAACTCAGTTCCATTGTGTA
CATTTCATGGTTAAAACCAGATATTACTCTGAAGTATTTCAAATGACTTAAGTACAACAG
TGCTCCTTCCTAATTAAGAAACCAAAAAGGAGTTCCTATCGTGGCTCAGTGGTTAAGGAA
TCCTACCAGGAACCATGAGGTTGCAGTTTCCATCTCTGGCCTCGCTCAGTGGGTTGAGGA
TCTGGCGTTGCC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               2-209, gnl|bosTau2|chr10 (4724417-4724620)
               

               
               2-209, gnl|canFam2|chr8 (32009972-32010653)
               

               
               2-209, gnl|dasNov1|scaffold_36029 (6542-7184)
               

               
               2-209, gnl|echTel1|scaffold_324559 (82356-81813)
               

               
               2-209, gnl|hg17|chr14 (52327399-52328032)
               

               
               2-209, gnl|Hg17|chr14 (52328082-52327896)
               

               
               2-209, gnl|mm7|chr14 (40706928-40707360)
               

               
               2-209, gnl|Mm7|chr14 (40707407-40707230)
               

               
               2-209, gnl|oryCun1|scaffold_172537 (60494-59932)
               

               
               2-209, gnl|panTro1|chr15 (51779975-51780608)
               

               
               2-209, gnl|rheMac2|chr7 (115805507-115806139)
               

               
               2-209, gnl|rn3|chr15 (21284072-21284511)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-209, gnl|bosTau2|chr10 (4724417-4724620)
               

               
               2-209, gnl|canFam2|chr8 (32009972-32010653)
               

               
               2-209, gnl|dasNov1|scaffold_36029 (6542-7184)
               

               
               2-209, gnl|echTel1|scaffold_324559 (82356-81813)
               

               
               2-209, gnl|hg17|chr14 (52327399-52328032)
               

               
               2-209, gnl|Hg17|chr14 (52328082-52327896)
               

               
               2-209, gnl|mm7|chr14 (40706928-40707360)
               

               
               2-209, gnl|Mm7|chr14 (40707407-40707230)
               

               
               2-209, gnl|oryCun1|scaffold_172537 (60494-59932)
               

               
               2-209, gnl|panTro1|chr15 (51779975-51780608)
               

               
               2-209, gnl|rheMac2|chr7 (115805507-115806139)
               

               
               2-209, gnl|rn3|chr15 (21284072-21284511)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	2-209, gnl\|bosTau2\|chr10 (4724417-4724620)
	2-209, gnl\|canFam2\|chr8 (32009972-32010653)
	2-209, gnl\|dasNov1\|scaffold_36029 (6542-7184)
	2-209, gnl\|echTel1\|scaffold_324559 (82356-81813)
	2-209, gnl\|hg17\|chr14 (52327399-52328032)
	2-209, gnl\|Hg17\|chr14 (52328082-52327896)
	2-209, gnl\|mm7\|chr14 (40706928-40707360)
	2-209, gnl\|Mm7\|chr14 (40707407-40707230)
	2-209, gnl\|oryCun1\|scaffold_172537 (60494-59932)
	2-209, gnl\|panTro1\|chr15 (51779975-51780608)
	2-209, gnl\|rheMac2\|chr7 (115805507-115806139)
	2-209, gnl\|rn3\|chr15 (21284072-21284511)