Non-Coding RNA Search

Ss1.1-Liv1-LVRM10102C02.5

Sequence:


               
               GTTATCACAGGATTTTTTTTTACCTAAAATAGGAAAAGAACATAGTGCCAGAAATGCATA
CTGTAAATTGCAAGAACTGAAAAATATTTGCATAGTCAGATCATTTAAACTTACAACACA
AAAATAAATTTTCAAAAGTCATGATGGCTGAAATAGGGTATACAAATTATTTTTTAATTT
CTAATTCCTGCATATTATGCTACTTTTAAATACTGCTTTGTAGTGTTGAAACCTCTGGTC
TTTGATTCCTGTAAACACCAGTTCATTTTCTTGCCATTCTCCTAACTCTGTCCTGTGGTC
TATAAAACTATATTCTGGTTTTTGTTAGACCATTGCTGCTTCTTTCAACCTGTATAGGTC
TTTTTGTGTGTAATATTGTTCTTGGTGCTAAATACACTTTCTTATGGTATTCAGGATAAC
TCTACATTTGTGACTATTTGCTTATTTTCTTCAAGTTATGAGACTTATTTTTTTAATTAA
AAATACCCAACATTATGCTAGTAAAGGTGACCACTGAATATAAAGTAACATTAGTGAAAA
TTAACTATTGAGAACATTGCAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTATCACAGGATTTTTTTTTACCTAAAATAGGAAAAGAACATAGTGCCAGAAATGCATA
CTGTAAATTGCAAGAACTGAAAAATATTTGCATAGTCAGATCATTTAAACTTACAACACA
AAAATAAATTTTCAAAAGTCATGATGGCTGAAATAGGGTATACAAATTATTTTTTAATTT
CTAATTCCTGCATATTATGCTACTTTTAAATACTGCTTTGTAGTGTTGAAACCTCTGGTC
TTTGATTCCTGTAAACACCAGTTCATTTTCTTGCCATTCTCCTAACTCTGTCCTGTGGTC
TATAAAACTATATTCTGGTTTTTGTTAGACCATTGCTGCTTCTTTCAACCTGTATAGGTC
TTTTTGTGTGTAATATTGTTCTTGGTGCTAAATACACTTTCTTATGGTATTCAGGATAAC
TCTACATTTGTGACTATTTGCTTATTTTCTTCAAGTTATGAGACTTATTTTTTTAATTAA
AAATACCCAACATTATGCTAGTAAAGGTGACCACTGAATATAAAGTAACATTAGTGAAAA
TTAACTATTGAGAACATTGCAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               235-354, + strand, RNAz p=0.70307

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-354, + strand, RNAz p=0.70307

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               13-538, gnl|bosTau2|chr10 (9481119-9481643)
               

               
               13-538, gnl|canFam2|chr3 (3136832-3136171)
               

               
               13-538, gnl|dasNov1|scaffold_161258 (1199-1922)
               

               
               13-538, gnl|echTel1|scaffold_205800 (2119-1494)
               

               
               13-538, gnl|hg17|chr5 (112210817-112211516)
               

               
               13-538, gnl|Hg17|chr5 (112211147-112211668)
               

               
               13-538, gnl|loxAfr1|scaffold_25295 (21744-22487)
               

               
               13-538, gnl|mm7|chr18 (34696915-34697534)
               

               
               13-538, gnl|Mm7|chr18 (34697228-34697691)
               

               
               13-538, gnl|oryCun1|scaffold_198745 (40109-40746)
               

               
               13-538, gnl|panTro1|chr4 (118338524-118339223)
               

               
               13-538, gnl|rheMac2|chr6 (109166315-109167013)
               

               
               13-538, gnl|rn3|chr18 (26819987-26820551)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-538, gnl|bosTau2|chr10 (9481119-9481643)
               

               
               13-538, gnl|canFam2|chr3 (3136832-3136171)
               

               
               13-538, gnl|dasNov1|scaffold_161258 (1199-1922)
               

               
               13-538, gnl|echTel1|scaffold_205800 (2119-1494)
               

               
               13-538, gnl|hg17|chr5 (112210817-112211516)
               

               
               13-538, gnl|Hg17|chr5 (112211147-112211668)
               

               
               13-538, gnl|loxAfr1|scaffold_25295 (21744-22487)
               

               
               13-538, gnl|mm7|chr18 (34696915-34697534)
               

               
               13-538, gnl|Mm7|chr18 (34697228-34697691)
               

               
               13-538, gnl|oryCun1|scaffold_198745 (40109-40746)
               

               
               13-538, gnl|panTro1|chr4 (118338524-118339223)
               

               
               13-538, gnl|rheMac2|chr6 (109166315-109167013)
               

               
               13-538, gnl|rn3|chr18 (26819987-26820551)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	13-538, gnl\|bosTau2\|chr10 (9481119-9481643)
	13-538, gnl\|canFam2\|chr3 (3136832-3136171)
	13-538, gnl\|dasNov1\|scaffold_161258 (1199-1922)
	13-538, gnl\|echTel1\|scaffold_205800 (2119-1494)
	13-538, gnl\|hg17\|chr5 (112210817-112211516)
	13-538, gnl\|Hg17\|chr5 (112211147-112211668)
	13-538, gnl\|loxAfr1\|scaffold_25295 (21744-22487)
	13-538, gnl\|mm7\|chr18 (34696915-34697534)
	13-538, gnl\|Mm7\|chr18 (34697228-34697691)
	13-538, gnl\|oryCun1\|scaffold_198745 (40109-40746)
	13-538, gnl\|panTro1\|chr4 (118338524-118339223)
	13-538, gnl\|rheMac2\|chr6 (109166315-109167013)
	13-538, gnl\|rn3\|chr18 (26819987-26820551)